Wall clock time and date at job start Mon Mar 30 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38236 * 120.00218 * 2 1 4 4 C 1.38237 * 120.00488 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00255 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99519 * 359.97438 * 4 3 2 7 7 C 1.50700 * 119.99857 * 179.97438 * 6 4 3 8 8 C 1.38233 * 120.00395 * 0.02562 * 6 4 3 9 9 C 1.50696 * 120.00314 * 179.97438 * 8 6 4 10 10 F 1.39899 * 109.46910 * 345.23038 * 9 8 6 11 11 F 1.39902 * 109.47446 * 225.22881 * 9 8 6 12 12 C 1.50698 * 109.47300 * 105.22939 * 9 8 6 13 13 H 1.08002 * 120.00275 * 355.22129 * 12 9 8 14 14 C 1.37878 * 120.00369 * 175.21975 * 12 9 8 15 15 N 1.31517 * 119.99625 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00232 * 180.27760 * 14 12 9 17 17 H 1.48503 * 109.47256 * 269.72290 * 16 14 12 18 18 H 1.48503 * 109.47222 * 29.72694 * 16 14 12 19 19 H 1.48502 * 109.47350 * 149.72500 * 16 14 12 20 20 C 1.38235 * 120.00116 * 180.27124 * 2 1 3 21 21 C 1.50703 * 120.00169 * 0.02562 * 20 2 1 22 22 H 1.09008 * 109.47018 * 90.00312 * 1 2 3 23 23 H 1.08994 * 109.47645 * 209.99953 * 1 2 3 24 24 H 1.08996 * 109.47406 * 330.00530 * 1 2 3 25 25 H 1.08007 * 119.99950 * 359.97438 * 3 2 1 26 26 H 1.09005 * 109.46877 * 270.02258 * 5 4 3 27 27 H 1.09001 * 109.47183 * 30.01840 * 5 4 3 28 28 H 1.09002 * 109.47181 * 150.02399 * 5 4 3 29 29 H 1.08998 * 109.47263 * 263.91722 * 7 6 4 30 30 H 1.09003 * 109.47157 * 23.91961 * 7 6 4 31 31 H 1.09004 * 109.47222 * 143.91304 * 7 6 4 32 32 H 0.97000 * 119.99642 * 180.02562 * 15 14 12 33 33 H 1.08996 * 109.47050 * 263.93752 * 21 20 2 34 34 H 1.09001 * 109.46782 * 23.93490 * 21 20 2 35 35 H 1.08996 * 109.47042 * 143.92644 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0005 7 6 5.7787 0.0000 -0.0017 8 6 3.5805 -1.1971 -0.0005 9 6 4.3340 -2.5022 -0.0011 10 9 5.6715 -2.2683 -0.3378 11 9 3.7623 -3.3704 -0.9375 12 6 4.2625 -3.1242 1.3697 13 1 3.7921 -2.5894 2.1815 14 6 4.7976 -4.3761 1.5875 15 7 5.3709 -5.0272 0.5990 16 14 4.7020 -5.1503 3.2848 17 1 5.9079 -4.7778 4.0674 18 1 3.4870 -4.6608 3.9845 19 1 4.6352 -6.6278 3.1519 20 6 2.1982 -1.1971 -0.0057 21 6 1.4447 -2.5023 -0.0124 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6582 2.1325 -0.0004 26 1 4.5149 2.8168 -1.0290 27 1 3.7453 3.2619 0.5131 28 1 5.2868 2.3719 0.5120 29 1 6.1412 -0.1093 -1.0238 30 1 6.1424 0.9396 0.4143 31 1 6.1425 -0.8302 0.6037 32 1 5.7470 -5.9081 0.7522 33 1 1.3567 -2.8762 1.0076 34 1 0.4497 -2.3452 -0.4290 35 1 1.9826 -3.2292 -0.6209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258976308.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:21 Heat of formation + Delta-G solvation = -82.498144 kcal Electronic energy + Delta-G solvation = -19775.624200 eV Core-core repulsion = 16602.074574 eV Total energy + Delta-G solvation = -3173.549626 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.13628 -45.17879 -39.26611 -34.36855 -33.11869 -32.25515 -29.00253 -28.66514 -27.31573 -25.16699 -23.67888 -22.97204 -20.02998 -18.94521 -17.27266 -16.14465 -15.57708 -14.78693 -14.66672 -14.60484 -14.11367 -13.78757 -13.22498 -12.87756 -12.79857 -12.63283 -12.27227 -12.14838 -12.14506 -11.87575 -11.77044 -11.54004 -11.48295 -11.16072 -11.03571 -10.70850 -10.59026 -10.37664 -10.27052 -9.84560 -9.67815 -8.91088 -8.84339 -7.89557 -7.65723 -6.27937 -4.54176 1.91411 1.92675 3.19713 3.25730 3.29669 4.15774 4.26745 5.02639 5.10578 5.22272 5.27372 5.53949 5.57836 5.63466 5.81690 5.85932 5.90260 5.95007 6.06896 6.11662 6.23219 6.30483 6.39023 6.51386 6.54234 6.58073 6.72528 6.84479 6.93380 7.05805 7.22234 7.28535 7.48439 7.60992 7.63745 7.69021 8.56051 9.25445 10.75993 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.022316 B = 0.008896 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.403215 B = 3146.697480 C = 3660.338789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C -0.118 4.118 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.062 4.062 7 C -0.129 4.129 8 C -0.108 4.108 9 C 0.443 3.557 10 F -0.214 7.214 11 F -0.210 7.210 12 C -0.579 4.579 13 H 0.078 0.922 14 C 0.086 3.914 15 N -0.854 5.854 16 Si 0.908 3.092 17 H -0.275 1.275 18 H -0.268 1.268 19 H -0.281 1.281 20 C -0.048 4.048 21 C -0.137 4.137 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.270 0.730 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 9.558 -0.578 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.108 4.108 3 C -0.136 4.136 4 C -0.107 4.107 5 C -0.165 4.165 6 C -0.062 4.062 7 C -0.185 4.185 8 C -0.109 4.109 9 C 0.407 3.593 10 F -0.195 7.195 11 F -0.191 7.191 12 C -0.616 4.616 13 H 0.096 0.904 14 C -0.123 4.123 15 N -0.487 5.487 16 Si 0.734 3.266 17 H -0.200 1.200 18 H -0.193 1.193 19 H -0.207 1.207 20 C -0.048 4.048 21 C -0.193 4.193 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.131 0.869 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.021 9.354 -0.691 10.639 hybrid contribution 0.023 -0.414 0.740 0.848 sum -4.998 8.941 0.049 10.243 Atomic orbital electron populations 1.20719 0.91789 1.02212 1.01629 1.19611 0.95509 0.92571 1.03098 1.20696 0.93327 0.96874 1.02732 1.19572 0.93533 0.94481 1.03134 1.20762 1.00102 0.93989 1.01671 1.19583 0.96426 0.91556 0.98644 1.21461 0.91107 1.02902 1.03056 1.20589 0.94046 0.95315 1.00921 1.16947 0.73087 0.82149 0.87110 1.92799 1.38583 1.94184 1.93938 1.92718 1.83834 1.72939 1.69604 1.21412 1.43378 1.03265 0.93565 0.90429 1.25109 0.92915 0.96454 0.97866 1.70043 1.33949 1.13341 1.31359 0.86345 0.79002 0.78318 0.82983 1.20042 1.19284 1.20691 1.19486 0.92607 0.95103 0.97603 1.21287 0.98727 0.95431 1.03886 0.91869 0.91378 0.92303 0.86912 0.91871 0.92335 0.91223 0.91620 0.93372 0.87771 0.92032 0.90876 0.93104 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.18 36.00 0.33 -1.14 16 2 C -0.11 -1.91 5.88 -104.63 -0.62 -2.52 16 3 C -0.12 -1.97 9.36 -39.58 -0.37 -2.34 16 4 C -0.11 -1.89 5.88 -104.63 -0.62 -2.50 16 5 C -0.11 -1.48 9.59 36.00 0.35 -1.13 16 6 C -0.06 -1.28 5.87 -104.63 -0.61 -1.90 16 7 C -0.13 -2.50 8.00 36.01 0.29 -2.21 16 8 C -0.11 -2.49 4.94 -104.62 -0.52 -3.01 16 9 C 0.44 11.73 1.28 -29.04 -0.04 11.69 16 10 F -0.21 -5.81 12.28 2.25 0.03 -5.78 16 11 F -0.21 -5.83 13.22 2.25 0.03 -5.80 16 12 C -0.58 -15.88 8.02 -34.44 -0.28 -16.15 16 13 H 0.08 2.10 7.74 -52.49 -0.41 1.69 16 14 C 0.09 2.35 5.39 -17.82 -0.10 2.26 16 15 N -0.85 -24.67 12.61 55.43 0.70 -23.97 16 16 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.05 -1.00 5.81 -104.62 -0.61 -1.60 16 21 C -0.14 -2.73 8.37 36.01 0.30 -2.42 16 22 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 23 H 0.07 0.91 6.60 -51.93 -0.34 0.57 16 24 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.07 0.92 5.89 -51.93 -0.31 0.61 16 29 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 30 H 0.05 0.77 5.73 -51.93 -0.30 0.48 16 31 H 0.10 2.29 5.84 -51.93 -0.30 1.99 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 35 H 0.10 2.29 5.00 -51.93 -0.26 2.03 16 LS Contribution 284.59 15.07 4.29 4.29 Total: -1.00 -30.01 284.59 -6.78 -36.79 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.32 Total: 1.69 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -2.48 Total: -22.99 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.70 Total: -23.97 kcal Atomic # 9 Polarization: -11.64 SS G_CDS: 0.06 Total: -11.58 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.01 -6.78 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258976308.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.710 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds