Wall clock time and date at job start Mon Mar 30 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38236 * 120.00218 * 2 1 4 4 C 1.38237 * 120.00488 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00255 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99519 * 359.97438 * 4 3 2 7 7 C 1.50700 * 119.99857 * 179.97438 * 6 4 3 8 8 C 1.38233 * 120.00395 * 0.02562 * 6 4 3 9 9 C 1.50696 * 120.00314 * 179.97438 * 8 6 4 10 10 F 1.39899 * 109.46910 * 345.23038 * 9 8 6 11 11 F 1.39902 * 109.47446 * 225.22881 * 9 8 6 12 12 C 1.50698 * 109.47300 * 105.22939 * 9 8 6 13 13 H 1.08002 * 120.00275 * 355.22129 * 12 9 8 14 14 C 1.37878 * 120.00369 * 175.21975 * 12 9 8 15 15 N 1.31517 * 119.99625 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00232 * 180.27760 * 14 12 9 17 17 H 1.48503 * 109.47256 * 269.72290 * 16 14 12 18 18 H 1.48503 * 109.47222 * 29.72694 * 16 14 12 19 19 H 1.48502 * 109.47350 * 149.72500 * 16 14 12 20 20 C 1.38235 * 120.00116 * 180.27124 * 2 1 3 21 21 C 1.50703 * 120.00169 * 0.02562 * 20 2 1 22 22 H 1.09008 * 109.47018 * 90.00312 * 1 2 3 23 23 H 1.08994 * 109.47645 * 209.99953 * 1 2 3 24 24 H 1.08996 * 109.47406 * 330.00530 * 1 2 3 25 25 H 1.08007 * 119.99950 * 359.97438 * 3 2 1 26 26 H 1.09005 * 109.46877 * 270.02258 * 5 4 3 27 27 H 1.09001 * 109.47183 * 30.01840 * 5 4 3 28 28 H 1.09002 * 109.47181 * 150.02399 * 5 4 3 29 29 H 1.08998 * 109.47263 * 263.91722 * 7 6 4 30 30 H 1.09003 * 109.47157 * 23.91961 * 7 6 4 31 31 H 1.09004 * 109.47222 * 143.91304 * 7 6 4 32 32 H 0.97000 * 119.99642 * 180.02562 * 15 14 12 33 33 H 1.08996 * 109.47050 * 263.93752 * 21 20 2 34 34 H 1.09001 * 109.46782 * 23.93490 * 21 20 2 35 35 H 1.08996 * 109.47042 * 143.92644 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0005 7 6 5.7787 0.0000 -0.0017 8 6 3.5805 -1.1971 -0.0005 9 6 4.3340 -2.5022 -0.0011 10 9 5.6715 -2.2683 -0.3378 11 9 3.7623 -3.3704 -0.9375 12 6 4.2625 -3.1242 1.3697 13 1 3.7921 -2.5894 2.1815 14 6 4.7976 -4.3761 1.5875 15 7 5.3709 -5.0272 0.5990 16 14 4.7020 -5.1503 3.2848 17 1 5.9079 -4.7778 4.0674 18 1 3.4870 -4.6608 3.9845 19 1 4.6352 -6.6278 3.1519 20 6 2.1982 -1.1971 -0.0057 21 6 1.4447 -2.5023 -0.0124 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6582 2.1325 -0.0004 26 1 4.5149 2.8168 -1.0290 27 1 3.7453 3.2619 0.5131 28 1 5.2868 2.3719 0.5120 29 1 6.1412 -0.1093 -1.0238 30 1 6.1424 0.9396 0.4143 31 1 6.1425 -0.8302 0.6037 32 1 5.7470 -5.9081 0.7522 33 1 1.3567 -2.8762 1.0076 34 1 0.4497 -2.3452 -0.4290 35 1 1.9826 -3.2292 -0.6209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258976308.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:20 Heat of formation + Delta-G solvation = -98.163811 kcal Electronic energy + Delta-G solvation = -19776.303514 eV Core-core repulsion = 16602.074574 eV Total energy + Delta-G solvation = -3174.228941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.21109 -47.27933 -40.69788 -35.74343 -35.06122 -33.89791 -30.35923 -30.10106 -29.11343 -26.71810 -25.03670 -24.74639 -21.72203 -20.37263 -19.35898 -17.85111 -17.40767 -16.68063 -16.54022 -16.03654 -15.85983 -15.32283 -14.60253 -14.38225 -14.25224 -14.15721 -13.95734 -13.80181 -13.64019 -13.49437 -13.36797 -13.13152 -12.88121 -12.78416 -12.73644 -12.30665 -12.27249 -12.04284 -11.80930 -11.56059 -11.38331 -10.92719 -10.78087 -9.43253 -9.07400 -8.36618 -6.71580 0.43336 0.48579 1.35790 1.37642 1.49691 2.27415 2.76113 2.92619 3.41986 3.92743 3.98103 4.12927 4.28706 4.39409 4.45085 4.62343 4.71393 4.72627 4.78930 4.83730 4.85224 4.90054 4.91723 4.97762 5.14045 5.18028 5.24952 5.28919 5.38403 5.46823 5.52149 5.63874 5.68783 5.77712 5.95880 6.23793 6.41575 7.12144 8.67870 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.022316 B = 0.008896 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.403215 B = 3146.697480 C = 3660.338789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.113 4.113 4 C -0.103 4.103 5 C -0.107 4.107 6 C -0.090 4.090 7 C -0.121 4.121 8 C -0.142 4.142 9 C 0.429 3.571 10 F -0.227 7.227 11 F -0.227 7.227 12 C -0.589 4.589 13 H 0.073 0.927 14 C 0.033 3.967 15 N -0.895 5.895 16 Si 0.977 3.023 17 H -0.267 1.267 18 H -0.259 1.259 19 H -0.274 1.274 20 C -0.076 4.076 21 C -0.129 4.129 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.156 0.844 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.273 0.727 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.849 12.175 0.379 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.131 4.131 4 C -0.103 4.103 5 C -0.163 4.163 6 C -0.090 4.090 7 C -0.177 4.177 8 C -0.143 4.143 9 C 0.393 3.607 10 F -0.208 7.208 11 F -0.208 7.208 12 C -0.626 4.626 13 H 0.091 0.909 14 C -0.172 4.172 15 N -0.529 5.529 16 Si 0.800 3.200 17 H -0.192 1.192 18 H -0.183 1.183 19 H -0.199 1.199 20 C -0.076 4.076 21 C -0.185 4.185 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.173 0.827 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.733 11.983 0.263 13.747 hybrid contribution 0.530 -1.140 0.390 1.316 sum -6.203 10.842 0.653 12.508 Atomic orbital electron populations 1.20805 0.88672 1.03642 1.03089 1.20081 0.97759 0.91623 1.00944 1.21219 0.93132 0.98158 1.00584 1.20050 0.94449 0.94874 1.00914 1.20844 1.00078 0.92290 1.03096 1.19819 0.96870 0.92172 1.00169 1.21292 0.91037 1.03127 1.02230 1.20489 0.95164 0.94312 1.04365 1.17264 0.72990 0.84025 0.86413 1.92771 1.39655 1.94371 1.94014 1.92681 1.84114 1.73890 1.70096 1.21635 1.43166 1.03680 0.94136 0.90862 1.26069 0.92237 0.96870 1.02063 1.70160 1.35155 1.13880 1.33729 0.85274 0.79418 0.77522 0.77832 1.19216 1.18326 1.19852 1.19692 0.92000 0.96658 0.99292 1.21142 1.00030 0.94690 1.02642 0.90212 0.91413 0.89495 0.82651 0.90298 0.89544 0.91092 0.92157 0.90025 0.91384 0.91772 0.92094 0.89733 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.18 71.23 0.65 -1.82 16 2 C -0.10 -3.41 5.88 -19.87 -0.12 -3.52 16 3 C -0.11 -3.33 9.36 22.27 0.21 -3.12 16 4 C -0.10 -3.34 5.88 -19.87 -0.12 -3.46 16 5 C -0.11 -2.46 9.59 71.23 0.68 -1.77 16 6 C -0.09 -3.73 5.87 -19.87 -0.12 -3.85 16 7 C -0.12 -4.76 8.00 71.24 0.57 -4.19 16 8 C -0.14 -6.78 4.94 -19.87 -0.10 -6.88 16 9 C 0.43 23.91 1.28 29.10 0.04 23.95 16 10 F -0.23 -13.10 12.28 44.97 0.55 -12.55 16 11 F -0.23 -13.40 13.22 44.97 0.59 -12.80 16 12 C -0.59 -33.69 8.02 25.60 0.21 -33.48 16 13 H 0.07 4.12 7.74 -2.91 -0.02 4.10 16 14 C 0.03 1.84 5.39 84.65 0.46 2.30 16 15 N -0.90 -53.81 12.61 21.45 0.27 -53.54 16 16 Si 0.98 43.49 29.54 68.60 2.03 45.52 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C -0.08 -3.18 5.81 -19.86 -0.12 -3.30 16 21 C -0.13 -5.22 8.37 71.24 0.60 -4.62 16 22 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.07 1.60 6.60 -2.39 -0.02 1.58 16 24 H 0.09 1.57 8.09 -2.39 -0.02 1.56 16 25 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 26 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 28 H 0.07 1.62 5.89 -2.39 -0.01 1.60 16 29 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 30 H 0.08 2.56 5.73 -2.39 -0.01 2.54 16 31 H 0.07 3.15 5.84 -2.38 -0.01 3.14 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.08 2.71 6.37 -2.39 -0.02 2.70 16 35 H 0.07 3.26 5.00 -2.39 -0.01 3.25 16 Total: -1.00 -68.88 284.59 7.39 -61.49 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.10 Total: 15.64 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 2.85 Total: -43.76 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.27 Total: -53.54 kcal Atomic # 9 Polarization: -26.50 SS G_CDS: 1.15 Total: -25.35 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.88 7.39 -61.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258976308.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.674 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds