Wall clock time and date at job start Mon Mar 30 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 119.99864 * 2 1 4 4 C 1.38234 * 119.99513 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99659 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00375 * 359.97438 * 4 3 2 7 7 C 1.50701 * 119.99899 * 180.02562 * 6 4 3 8 8 F 1.39895 * 109.47264 * 344.88083 * 7 6 4 9 9 F 1.39902 * 109.46908 * 224.87874 * 7 6 4 10 10 C 1.53005 * 109.46945 * 104.88357 * 7 6 4 11 11 C 1.50699 * 109.46929 * 175.45568 * 10 7 6 12 12 H 1.08003 * 119.99920 * 359.97438 * 11 10 7 13 13 C 1.37879 * 119.99795 * 179.97438 * 11 10 7 14 14 N 1.31505 * 120.00325 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99736 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47277 * 59.99795 * 15 13 11 17 17 H 1.48500 * 109.46979 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47201 * 300.00071 * 15 13 11 19 19 C 1.38234 * 119.99581 * 0.27689 * 6 4 3 20 20 C 1.50702 * 119.99492 * 179.72774 * 19 6 4 21 21 C 1.38230 * 119.99682 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47501 * 89.99925 * 1 2 3 23 23 H 1.08995 * 109.47149 * 210.00398 * 1 2 3 24 24 H 1.09005 * 109.46681 * 330.00120 * 1 2 3 25 25 H 1.07999 * 120.00052 * 359.97341 * 3 2 1 26 26 H 1.09000 * 109.47007 * 263.75164 * 5 4 3 27 27 H 1.09003 * 109.47299 * 23.75131 * 5 4 3 28 28 H 1.08999 * 109.46929 * 143.75608 * 5 4 3 29 29 H 1.09001 * 109.46840 * 295.44972 * 10 7 6 30 30 H 1.08998 * 109.46992 * 55.45672 * 10 7 6 31 31 H 0.96999 * 120.00674 * 179.97438 * 14 13 11 32 32 H 1.09006 * 109.46879 * 83.54082 * 20 19 6 33 33 H 1.09001 * 109.46854 * 203.53557 * 20 19 6 34 34 H 1.08994 * 109.47642 * 323.53812 * 20 19 6 35 35 H 1.08002 * 120.00174 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 0.0000 0.0028 8 9 6.2453 1.2731 -0.3414 9 9 6.2457 -0.9351 -0.9272 10 6 6.2876 -0.3699 1.3975 11 6 7.7904 -0.4791 1.3712 12 1 8.3286 -0.3027 0.4516 13 6 8.4782 -0.8041 2.5212 14 7 7.8228 -1.0184 3.6410 15 14 10.3409 -0.9401 2.4884 16 1 10.9252 0.3616 2.0767 17 1 10.8350 -1.2978 3.8424 18 1 10.7436 -1.9917 1.5202 19 6 3.5804 -1.1972 -0.0036 20 6 4.3340 -2.5022 -0.0087 21 6 2.1981 -1.1971 0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 1.6582 2.1325 -0.0004 26 1 4.6130 2.7603 -1.0217 27 1 3.7010 3.2875 0.4131 28 1 5.2332 2.4028 0.6079 29 1 5.9917 0.4014 2.1085 30 1 5.8591 -1.3257 1.6989 31 1 8.3066 -1.2474 4.4500 32 1 4.6153 -2.7633 1.0116 33 1 3.6999 -3.2863 -0.4226 34 1 5.2317 -2.4012 -0.6185 35 1 1.6581 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259022015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:01 Heat of formation + Delta-G solvation = -85.106363 kcal Electronic energy + Delta-G solvation = -19372.423590 eV Core-core repulsion = 16198.760863 eV Total energy + Delta-G solvation = -3173.662727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.18314 -46.19039 -39.39023 -34.03891 -33.20967 -32.95738 -29.98009 -27.72028 -27.10231 -26.36792 -23.98481 -21.34579 -20.59252 -20.12242 -17.04240 -16.69185 -15.93414 -15.46186 -15.13731 -14.47091 -14.23873 -14.00525 -13.73441 -13.39481 -13.13780 -13.01915 -12.68891 -12.49669 -12.38791 -12.12636 -11.99977 -11.76677 -11.46943 -11.24585 -10.98881 -10.75822 -10.70781 -10.63568 -10.47347 -10.21119 -9.50203 -9.30637 -8.48522 -8.26452 -8.19368 -6.10913 -4.14453 1.48449 1.64132 3.32283 3.35427 3.39489 3.87512 4.37078 4.51957 4.94090 4.96802 5.12475 5.23771 5.32533 5.41214 5.54597 5.58459 5.64759 5.74279 5.81371 5.92794 5.95108 5.98405 6.08907 6.18996 6.21068 6.25265 6.54212 6.70047 6.74819 6.80742 6.95135 7.25308 7.33526 7.42094 7.83677 8.12971 8.88080 9.49492 11.00216 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.006536 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.161506 B = 4282.799431 C = 4536.705953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.046 4.046 5 C -0.131 4.131 6 C -0.148 4.148 7 C 0.338 3.662 8 F -0.196 7.196 9 F -0.197 7.197 10 C -0.006 4.006 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.037 4.037 20 C -0.149 4.149 21 C -0.136 4.136 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.983 1.766 -6.458 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.076 4.076 3 C -0.155 4.155 4 C -0.046 4.046 5 C -0.187 4.187 6 C -0.149 4.149 7 C 0.302 3.698 8 F -0.177 7.177 9 F -0.178 7.178 10 C -0.043 4.043 11 C -0.561 4.561 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.037 4.037 20 C -0.205 4.205 21 C -0.154 4.154 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.929 1.729 -6.298 13.600 hybrid contribution 0.947 -0.056 0.007 0.949 sum -10.982 1.673 -6.292 12.767 Atomic orbital electron populations 1.20761 0.91380 1.02589 1.02022 1.19879 0.95770 0.93187 0.98792 1.20781 0.93049 0.97415 1.04229 1.19740 0.93703 0.94795 0.96406 1.21418 1.01251 0.92689 1.03348 1.20316 0.94826 0.93850 1.05919 1.20025 0.86885 0.71995 0.90865 1.92850 1.90404 1.40864 1.93601 1.92761 1.90103 1.65565 1.69338 1.20134 0.97929 0.99709 0.86529 1.20958 0.90455 1.48442 0.96264 0.91934 1.24937 0.98912 0.94875 0.95203 1.69938 1.35954 1.47142 1.00126 0.86534 0.84923 0.78811 0.77102 1.20020 1.21181 1.19992 1.19665 0.93577 0.94778 0.95666 1.21429 1.01832 0.92829 1.04396 1.20804 0.93087 0.97448 1.04074 0.91388 0.91635 0.91678 0.86144 0.91019 0.92932 0.88172 0.93798 0.93193 0.92640 0.90106 0.92224 0.88052 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.76 16 2 C -0.08 -1.07 5.88 -104.62 -0.62 -1.69 16 3 C -0.14 -2.05 9.33 -39.58 -0.37 -2.42 16 4 C -0.05 -0.82 5.87 -104.62 -0.61 -1.43 16 5 C -0.13 -2.13 8.31 36.01 0.30 -1.83 16 6 C -0.15 -2.93 4.99 -104.62 -0.52 -3.45 16 7 C 0.34 7.60 1.40 -27.88 -0.04 7.57 16 8 F -0.20 -4.39 12.31 2.25 0.03 -4.36 16 9 F -0.20 -4.49 13.43 2.25 0.03 -4.46 16 10 C -0.01 -0.15 4.46 -27.88 -0.12 -0.27 16 11 C -0.52 -14.77 8.61 -34.44 -0.30 -15.07 16 12 H 0.06 1.77 7.64 -52.48 -0.40 1.37 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.15 13.28 55.43 0.74 -25.41 16 15 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.04 -0.66 5.79 -104.62 -0.61 -1.26 16 20 C -0.15 -2.56 8.72 36.01 0.31 -2.24 16 21 C -0.14 -2.07 9.33 -39.59 -0.37 -2.44 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 27 H 0.05 0.71 8.04 -51.93 -0.42 0.30 16 28 H 0.10 1.85 5.87 -51.93 -0.30 1.55 16 29 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.31 6.22 -51.93 -0.32 0.99 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.08 1.46 7.11 -51.93 -0.37 1.09 16 33 H 0.06 0.83 8.04 -51.93 -0.42 0.42 16 34 H 0.10 1.90 4.99 -51.93 -0.26 1.64 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -29.86 290.78 -7.09 -36.96 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.57 Total: -0.07 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -2.68 Total: -23.63 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.41 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.06 Total: -8.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.86 -7.09 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259022015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.149 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds