Wall clock time and date at job start Mon Mar 30 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 119.99864 * 2 1 4 4 C 1.38234 * 119.99513 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.99659 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00375 * 359.97438 * 4 3 2 7 7 C 1.50701 * 119.99899 * 180.02562 * 6 4 3 8 8 F 1.39895 * 109.47264 * 344.88083 * 7 6 4 9 9 F 1.39902 * 109.46908 * 224.87874 * 7 6 4 10 10 C 1.53005 * 109.46945 * 104.88357 * 7 6 4 11 11 C 1.50699 * 109.46929 * 175.45568 * 10 7 6 12 12 H 1.08003 * 119.99920 * 359.97438 * 11 10 7 13 13 C 1.37879 * 119.99795 * 179.97438 * 11 10 7 14 14 N 1.31505 * 120.00325 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99736 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47277 * 59.99795 * 15 13 11 17 17 H 1.48500 * 109.46979 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47201 * 300.00071 * 15 13 11 19 19 C 1.38234 * 119.99581 * 0.27689 * 6 4 3 20 20 C 1.50702 * 119.99492 * 179.72774 * 19 6 4 21 21 C 1.38230 * 119.99682 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47501 * 89.99925 * 1 2 3 23 23 H 1.08995 * 109.47149 * 210.00398 * 1 2 3 24 24 H 1.09005 * 109.46681 * 330.00120 * 1 2 3 25 25 H 1.07999 * 120.00052 * 359.97341 * 3 2 1 26 26 H 1.09000 * 109.47007 * 263.75164 * 5 4 3 27 27 H 1.09003 * 109.47299 * 23.75131 * 5 4 3 28 28 H 1.08999 * 109.46929 * 143.75608 * 5 4 3 29 29 H 1.09001 * 109.46840 * 295.44972 * 10 7 6 30 30 H 1.08998 * 109.46992 * 55.45672 * 10 7 6 31 31 H 0.96999 * 120.00674 * 179.97438 * 14 13 11 32 32 H 1.09006 * 109.46879 * 83.54082 * 20 19 6 33 33 H 1.09001 * 109.46854 * 203.53557 * 20 19 6 34 34 H 1.08994 * 109.47642 * 323.53812 * 20 19 6 35 35 H 1.08002 * 120.00174 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 0.0000 0.0028 8 9 6.2453 1.2731 -0.3414 9 9 6.2457 -0.9351 -0.9272 10 6 6.2876 -0.3699 1.3975 11 6 7.7904 -0.4791 1.3712 12 1 8.3286 -0.3027 0.4516 13 6 8.4782 -0.8041 2.5212 14 7 7.8228 -1.0184 3.6410 15 14 10.3409 -0.9401 2.4884 16 1 10.9252 0.3616 2.0767 17 1 10.8350 -1.2978 3.8424 18 1 10.7436 -1.9917 1.5202 19 6 3.5804 -1.1972 -0.0036 20 6 4.3340 -2.5022 -0.0087 21 6 2.1981 -1.1971 0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 1.6582 2.1325 -0.0004 26 1 4.6130 2.7603 -1.0217 27 1 3.7010 3.2875 0.4131 28 1 5.2332 2.4028 0.6079 29 1 5.9917 0.4014 2.1085 30 1 5.8591 -1.3257 1.6989 31 1 8.3066 -1.2474 4.4500 32 1 4.6153 -2.7633 1.0116 33 1 3.6999 -3.2863 -0.4226 34 1 5.2317 -2.4012 -0.6185 35 1 1.6581 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259022015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:01 Heat of formation + Delta-G solvation = -100.031581 kcal Electronic energy + Delta-G solvation = -19373.070796 eV Core-core repulsion = 16198.760863 eV Total energy + Delta-G solvation = -3174.309933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.97599 -47.98949 -40.63999 -35.71645 -34.69735 -34.46222 -31.83672 -28.97154 -28.57804 -27.61130 -25.81636 -23.09431 -21.87936 -21.50603 -18.88927 -18.37112 -17.72397 -17.38579 -16.56910 -16.20020 -15.71131 -15.31401 -15.06254 -14.85320 -14.76426 -14.47592 -14.01395 -13.89479 -13.79460 -13.71268 -13.43109 -13.24599 -13.07680 -12.97498 -12.65718 -12.50635 -12.22048 -11.98598 -11.92595 -11.80695 -11.59901 -11.08017 -10.67416 -9.51663 -9.50467 -8.29310 -6.41693 0.20597 0.39370 1.38097 1.41181 1.49485 2.35824 2.62422 2.90268 3.03776 3.61883 3.66726 3.90280 3.94725 3.97271 4.09199 4.37267 4.49477 4.56905 4.61770 4.70305 4.75284 4.78324 4.87835 4.93147 5.00857 5.12063 5.18669 5.21768 5.33397 5.44561 5.51553 5.60382 5.61674 5.67198 5.96048 6.06178 6.66234 7.26546 8.81966 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.006536 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.161506 B = 4282.799431 C = 4536.705953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.063 4.063 5 C -0.127 4.127 6 C -0.182 4.182 7 C 0.342 3.658 8 F -0.200 7.200 9 F -0.203 7.203 10 C 0.003 3.997 11 C -0.547 4.547 12 H 0.054 0.946 13 C 0.013 3.987 14 N -0.923 5.923 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.267 1.267 19 C -0.056 4.056 20 C -0.144 4.144 21 C -0.137 4.137 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.152 0.848 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.036 0.964 31 H 0.269 0.731 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.846 1.935 -6.971 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.067 4.067 3 C -0.153 4.153 4 C -0.063 4.063 5 C -0.183 4.183 6 C -0.183 4.183 7 C 0.306 3.694 8 F -0.181 7.181 9 F -0.184 7.184 10 C -0.034 4.034 11 C -0.585 4.585 12 H 0.072 0.928 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.790 3.210 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.192 1.192 19 C -0.057 4.057 20 C -0.200 4.200 21 C -0.155 4.155 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.170 0.830 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.800 1.900 -6.820 15.510 hybrid contribution 1.439 -0.098 0.171 1.452 sum -12.361 1.802 -6.649 14.151 Atomic orbital electron populations 1.20856 0.87950 1.04096 1.03596 1.20413 0.98146 0.92256 0.95929 1.21159 0.91867 0.99368 1.02933 1.19993 0.95193 0.94249 0.96904 1.21330 1.00501 0.93354 1.03158 1.20208 0.92656 0.95834 1.09625 1.19822 0.89178 0.71585 0.88803 1.92845 1.90781 1.40966 1.93491 1.92747 1.90521 1.65894 1.69272 1.19899 0.96912 0.98114 0.88501 1.21245 0.91906 1.49063 0.96288 0.92758 1.25824 1.03997 0.94125 0.94649 1.70043 1.37955 1.47482 1.00748 0.85486 0.78765 0.79109 0.77673 1.19338 1.20016 1.19201 1.19861 0.95074 0.94091 0.96628 1.21335 1.01698 0.94075 1.02940 1.21160 0.91862 0.99443 1.02987 0.89556 0.90284 0.90144 0.82988 0.90625 0.89997 0.91308 0.96237 0.94538 0.92238 0.92011 0.88896 0.90269 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.96 16 2 C -0.07 -1.67 5.88 -19.87 -0.12 -1.79 16 3 C -0.14 -3.70 9.33 22.27 0.21 -3.49 16 4 C -0.06 -2.20 5.87 -19.86 -0.12 -2.32 16 5 C -0.13 -4.13 8.31 71.24 0.59 -3.53 16 6 C -0.18 -7.36 4.99 -19.87 -0.10 -7.46 16 7 C 0.34 16.13 1.40 29.85 0.04 16.17 16 8 F -0.20 -9.38 12.31 44.97 0.55 -8.83 16 9 F -0.20 -9.75 13.43 44.97 0.60 -9.14 16 10 C 0.00 0.17 4.46 29.85 0.13 0.31 16 11 C -0.55 -32.13 8.61 25.60 0.22 -31.91 16 12 H 0.05 3.19 7.64 -2.91 -0.02 3.17 16 13 C 0.01 0.78 5.46 84.66 0.46 1.24 16 14 N -0.92 -55.36 13.28 21.45 0.28 -55.08 16 15 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 C -0.06 -2.02 5.79 -19.87 -0.11 -2.13 16 20 C -0.14 -5.06 8.72 71.24 0.62 -4.44 16 21 C -0.14 -3.84 9.33 22.27 0.21 -3.63 16 22 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 24 H 0.08 1.05 8.09 -2.38 -0.02 1.03 16 25 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 26 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 27 H 0.08 2.10 8.04 -2.39 -0.02 2.08 16 28 H 0.07 2.66 5.87 -2.39 -0.01 2.64 16 29 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 2.05 6.22 -2.39 -0.01 2.03 16 31 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.06 2.35 7.11 -2.38 -0.02 2.33 16 33 H 0.09 2.51 8.04 -2.39 -0.02 2.49 16 34 H 0.08 3.11 4.99 -2.39 -0.01 3.10 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -66.62 290.78 7.31 -59.31 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.09 Total: 10.84 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 2.75 Total: -43.95 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.08 kcal Atomic # 9 Polarization: -19.13 SS G_CDS: 1.16 Total: -17.97 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -66.62 7.31 -59.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259022015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.718 kcal (2) G-P(sol) polarization free energy of solvation -66.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds