Wall clock time and date at job start Mon Mar 30 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38263 * 120.00108 * 2 1 4 4 C 1.38209 * 119.99950 * 180.29878 * 3 2 1 5 5 C 1.50706 * 119.99935 * 179.74668 * 4 3 2 6 6 C 1.38258 * 120.00265 * 359.46867 * 4 3 2 7 7 C 1.50694 * 120.00124 * 180.27681 * 6 4 3 8 8 F 1.39900 * 109.47440 * 299.99849 * 7 6 4 9 9 F 1.39903 * 109.47300 * 60.00437 * 7 6 4 10 10 C 1.53003 * 109.47008 * 180.02562 * 7 6 4 11 11 C 1.50702 * 109.47196 * 180.02562 * 10 7 6 12 12 H 1.08002 * 119.99691 * 0.02562 * 11 10 7 13 13 C 1.37877 * 120.00210 * 179.97438 * 11 10 7 14 14 N 1.31514 * 119.99596 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00180 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47141 * 89.99951 * 15 13 11 17 17 H 1.48493 * 109.47264 * 210.00366 * 15 13 11 18 18 H 1.48499 * 109.46793 * 330.00253 * 15 13 11 19 19 C 1.38214 * 119.99771 * 0.25404 * 6 4 3 20 20 C 1.38213 * 120.00159 * 179.76778 * 2 1 3 21 21 C 1.50697 * 119.99878 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.47062 * 270.23218 * 1 2 3 23 23 H 1.08997 * 109.47062 * 30.22896 * 1 2 3 24 24 H 1.08997 * 109.46692 * 150.23438 * 1 2 3 25 25 H 1.07997 * 119.99949 * 0.04025 * 3 2 1 26 26 H 1.09001 * 109.46953 * 269.72172 * 5 4 3 27 27 H 1.09000 * 109.47318 * 29.71769 * 5 4 3 28 28 H 1.09000 * 109.47161 * 149.72400 * 5 4 3 29 29 H 1.08999 * 109.47344 * 299.99684 * 10 7 6 30 30 H 1.08996 * 109.47080 * 60.00082 * 10 7 6 31 31 H 0.97003 * 119.99189 * 179.97438 * 14 13 11 32 32 H 1.07998 * 119.99641 * 179.97438 * 19 6 4 33 33 H 1.09006 * 109.47193 * 269.97832 * 21 20 2 34 34 H 1.09002 * 109.46955 * 29.97880 * 21 20 2 35 35 H 1.09004 * 109.47118 * 149.97722 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1974 -0.0062 5 6 4.3340 2.5025 -0.0120 6 6 4.2718 0.0000 -0.0014 7 6 5.7787 0.0001 -0.0019 8 9 6.2447 0.6547 -1.1471 9 9 6.2455 0.6644 1.1375 10 6 6.2887 -1.4424 0.0034 11 6 7.7958 -1.4424 0.0036 12 1 8.3357 -0.5071 0.0006 13 6 8.4852 -2.6364 0.0085 14 7 7.8276 -3.7754 0.0126 15 14 10.3532 -2.6364 0.0094 16 1 10.8475 -2.6310 1.4096 17 1 10.8485 -3.8515 -0.6857 18 1 10.8485 -1.4266 -0.6950 19 6 3.5807 -1.1969 0.0044 20 6 2.1981 -1.1969 0.0049 21 6 1.4446 -2.5020 0.0096 22 1 -0.3633 0.0042 1.0276 23 1 -0.3633 0.8879 -0.5174 24 1 -0.3632 -0.8921 -0.5102 25 1 1.6584 2.1327 0.0007 26 1 4.5153 2.8128 -1.0411 27 1 3.7450 3.2644 0.4987 28 1 5.2866 2.3743 0.5020 29 1 5.9258 -1.9529 0.8955 30 1 5.9251 -1.9596 -0.8844 31 1 8.3127 -4.6154 0.0157 32 1 4.1208 -2.1322 0.0078 33 1 1.2629 -2.8129 1.0384 34 1 0.4923 -2.3735 -0.5048 35 1 2.0338 -3.2635 -0.5015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259066676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:04 Heat of formation + Delta-G solvation = -98.770695 kcal Electronic energy + Delta-G solvation = -19066.660137 eV Core-core repulsion = 15892.404880 eV Total energy + Delta-G solvation = -3174.255257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.97952 -45.88215 -39.51298 -34.39706 -33.56621 -32.34665 -30.06695 -28.78970 -27.23715 -25.09396 -23.83755 -22.57651 -20.55775 -19.43480 -16.89015 -16.44528 -16.15600 -15.59782 -14.92361 -14.73193 -14.26867 -14.20997 -13.80124 -13.38478 -12.76864 -12.71272 -12.69925 -12.55860 -12.32281 -12.27985 -11.95450 -11.76652 -11.61670 -11.45386 -11.22843 -11.14504 -10.85155 -10.73453 -10.68459 -10.30326 -9.35539 -9.23195 -8.56232 -8.45047 -8.16958 -6.11662 -4.13901 1.43930 1.61702 3.31077 3.36480 3.42116 3.84304 4.37782 4.50668 4.90531 4.93270 5.12666 5.22681 5.25348 5.36910 5.42182 5.52462 5.62623 5.65640 5.75238 5.79720 5.87931 5.89518 6.01278 6.03269 6.05329 6.17870 6.31859 6.48866 6.63536 6.80817 6.90235 7.22111 7.26533 7.37492 7.84205 8.14081 8.88245 9.50033 11.00104 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.006479 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.885948 B = 4320.393534 C = 5116.567755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.077 4.077 3 C -0.129 4.129 4 C -0.056 4.056 5 C -0.128 4.128 6 C -0.145 4.145 7 C 0.337 3.663 8 F -0.201 7.201 9 F -0.201 7.201 10 C -0.011 4.011 11 C -0.521 4.521 12 H 0.063 0.937 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.074 4.074 20 C -0.102 4.102 21 C -0.114 4.114 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.672 6.381 -0.004 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.147 4.147 4 C -0.056 4.056 5 C -0.185 4.185 6 C -0.146 4.146 7 C 0.301 3.699 8 F -0.182 7.182 9 F -0.182 7.182 10 C -0.048 4.048 11 C -0.559 4.559 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.091 4.091 20 C -0.102 4.102 21 C -0.170 4.170 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.139 0.861 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.618 6.226 -0.009 14.973 hybrid contribution 1.125 0.080 0.015 1.128 sum -12.492 6.306 0.007 13.994 Atomic orbital electron populations 1.20839 0.91457 1.02637 1.02167 1.19763 0.95729 0.92698 0.99533 1.20766 0.93033 0.97370 1.03555 1.19779 0.93781 0.94852 0.97177 1.21018 1.01069 0.93605 1.02787 1.20468 0.94982 0.94007 1.05151 1.19906 0.86801 0.92202 0.71018 1.92929 1.90149 1.83634 1.51514 1.92885 1.90144 1.82986 1.52137 1.20161 0.98282 0.86162 1.00186 1.20995 0.90179 0.93197 1.51542 0.91915 1.24938 0.99046 0.95284 0.94747 1.69939 1.35794 0.97351 1.50257 0.86451 0.84907 0.77646 0.78266 1.20458 1.21084 1.19634 1.21260 0.93347 0.98420 0.96111 1.19714 0.93436 0.94926 1.02172 1.20823 0.99747 0.94181 1.02274 0.91270 0.91838 0.91143 0.86133 0.90867 0.91743 0.90140 0.93483 0.93457 0.92705 0.83859 0.91274 0.91478 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.60 36.01 0.35 -0.79 16 2 C -0.08 -1.07 5.88 -104.62 -0.62 -1.69 16 3 C -0.13 -1.88 9.36 -39.58 -0.37 -2.25 16 4 C -0.06 -0.96 5.84 -104.62 -0.61 -1.57 16 5 C -0.13 -1.99 8.99 36.01 0.32 -1.67 16 6 C -0.15 -2.88 5.35 -104.63 -0.56 -3.44 16 7 C 0.34 7.75 1.26 -27.88 -0.04 7.71 16 8 F -0.20 -4.76 15.89 2.25 0.04 -4.72 16 9 F -0.20 -4.72 14.79 2.25 0.03 -4.68 16 10 C -0.01 -0.28 3.23 -27.88 -0.09 -0.37 16 11 C -0.52 -14.98 8.58 -34.44 -0.30 -15.27 16 12 H 0.06 1.82 7.74 -52.49 -0.41 1.41 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 15 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.07 -1.35 8.63 -39.58 -0.34 -1.69 16 20 C -0.10 -1.56 5.88 -104.62 -0.62 -2.18 16 21 C -0.11 -1.37 9.60 36.00 0.35 -1.02 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 24 H 0.07 0.62 5.95 -51.93 -0.31 0.32 16 25 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.08 1.40 5.52 -51.93 -0.29 1.12 16 29 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 30 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.14 2.76 5.89 -52.49 -0.31 2.45 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.66 5.95 -51.93 -0.31 0.35 16 35 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 LS Contribution 293.61 15.07 4.42 4.42 Total: -1.00 -30.60 293.61 -6.89 -37.49 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.49 Total: -1.33 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -2.62 Total: -22.57 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.60 -6.89 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259066676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.281 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds