Wall clock time and date at job start Mon Mar 30 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38263 * 120.00108 * 2 1 4 4 C 1.38209 * 119.99950 * 180.29878 * 3 2 1 5 5 C 1.50706 * 119.99935 * 179.74668 * 4 3 2 6 6 C 1.38258 * 120.00265 * 359.46867 * 4 3 2 7 7 C 1.50694 * 120.00124 * 180.27681 * 6 4 3 8 8 F 1.39900 * 109.47440 * 299.99849 * 7 6 4 9 9 F 1.39903 * 109.47300 * 60.00437 * 7 6 4 10 10 C 1.53003 * 109.47008 * 180.02562 * 7 6 4 11 11 C 1.50702 * 109.47196 * 180.02562 * 10 7 6 12 12 H 1.08002 * 119.99691 * 0.02562 * 11 10 7 13 13 C 1.37877 * 120.00210 * 179.97438 * 11 10 7 14 14 N 1.31514 * 119.99596 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00180 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47141 * 89.99951 * 15 13 11 17 17 H 1.48493 * 109.47264 * 210.00366 * 15 13 11 18 18 H 1.48499 * 109.46793 * 330.00253 * 15 13 11 19 19 C 1.38214 * 119.99771 * 0.25404 * 6 4 3 20 20 C 1.38213 * 120.00159 * 179.76778 * 2 1 3 21 21 C 1.50697 * 119.99878 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.47062 * 270.23218 * 1 2 3 23 23 H 1.08997 * 109.47062 * 30.22896 * 1 2 3 24 24 H 1.08997 * 109.46692 * 150.23438 * 1 2 3 25 25 H 1.07997 * 119.99949 * 0.04025 * 3 2 1 26 26 H 1.09001 * 109.46953 * 269.72172 * 5 4 3 27 27 H 1.09000 * 109.47318 * 29.71769 * 5 4 3 28 28 H 1.09000 * 109.47161 * 149.72400 * 5 4 3 29 29 H 1.08999 * 109.47344 * 299.99684 * 10 7 6 30 30 H 1.08996 * 109.47080 * 60.00082 * 10 7 6 31 31 H 0.97003 * 119.99189 * 179.97438 * 14 13 11 32 32 H 1.07998 * 119.99641 * 179.97438 * 19 6 4 33 33 H 1.09006 * 109.47193 * 269.97832 * 21 20 2 34 34 H 1.09002 * 109.46955 * 29.97880 * 21 20 2 35 35 H 1.09004 * 109.47118 * 149.97722 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1974 -0.0062 5 6 4.3340 2.5025 -0.0120 6 6 4.2718 0.0000 -0.0014 7 6 5.7787 0.0001 -0.0019 8 9 6.2447 0.6547 -1.1471 9 9 6.2455 0.6644 1.1375 10 6 6.2887 -1.4424 0.0034 11 6 7.7958 -1.4424 0.0036 12 1 8.3357 -0.5071 0.0006 13 6 8.4852 -2.6364 0.0085 14 7 7.8276 -3.7754 0.0126 15 14 10.3532 -2.6364 0.0094 16 1 10.8475 -2.6310 1.4096 17 1 10.8485 -3.8515 -0.6857 18 1 10.8485 -1.4266 -0.6950 19 6 3.5807 -1.1969 0.0044 20 6 2.1981 -1.1969 0.0049 21 6 1.4446 -2.5020 0.0096 22 1 -0.3633 0.0042 1.0276 23 1 -0.3633 0.8879 -0.5174 24 1 -0.3632 -0.8921 -0.5102 25 1 1.6584 2.1327 0.0007 26 1 4.5153 2.8128 -1.0411 27 1 3.7450 3.2644 0.4987 28 1 5.2866 2.3743 0.5020 29 1 5.9258 -1.9529 0.8955 30 1 5.9251 -1.9596 -0.8844 31 1 8.3127 -4.6154 0.0157 32 1 4.1208 -2.1322 0.0078 33 1 1.2629 -2.8129 1.0384 34 1 0.4923 -2.3735 -0.5048 35 1 2.0338 -3.2635 -0.5015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259066676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:04 Heat of formation + Delta-G solvation = -114.459302 kcal Electronic energy + Delta-G solvation = -19067.340446 eV Core-core repulsion = 15892.404880 eV Total energy + Delta-G solvation = -3174.935566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.84893 -47.76463 -40.74255 -35.86470 -35.29956 -33.89036 -31.65783 -30.06534 -28.62021 -26.48388 -25.52120 -23.99126 -22.13860 -20.84912 -18.81073 -18.32785 -17.76251 -17.42840 -16.52963 -16.16376 -15.88235 -15.37843 -15.11325 -14.86841 -14.39174 -14.18355 -14.10995 -13.78967 -13.73585 -13.58697 -13.54349 -13.51153 -13.27736 -12.81662 -12.69876 -12.69284 -12.41563 -12.31165 -12.17500 -11.81815 -11.47907 -11.07064 -10.70495 -9.76115 -9.38511 -8.32372 -6.44112 0.16373 0.36634 1.36765 1.38414 1.50227 2.34622 2.59410 2.85739 3.01501 3.61927 3.66233 3.89774 3.91960 4.02670 4.12278 4.22795 4.32269 4.58543 4.62802 4.70350 4.74831 4.81196 4.84201 4.96506 5.02143 5.06944 5.11465 5.21108 5.26190 5.38886 5.41623 5.56366 5.59642 5.66978 5.95224 6.04887 6.63065 7.24199 8.79703 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.006479 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.885948 B = 4320.393534 C = 5116.567755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.126 4.126 6 C -0.177 4.177 7 C 0.339 3.661 8 F -0.209 7.209 9 F -0.208 7.208 10 C -0.001 4.001 11 C -0.551 4.551 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.922 5.922 15 Si 0.968 3.032 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.269 1.269 19 C -0.098 4.098 20 C -0.106 4.106 21 C -0.113 4.113 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.158 0.842 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.270 0.730 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.682 7.293 0.017 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.069 4.069 5 C -0.183 4.183 6 C -0.178 4.178 7 C 0.304 3.696 8 F -0.190 7.190 9 F -0.189 7.189 10 C -0.038 4.038 11 C -0.589 4.589 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.792 3.208 16 H -0.194 1.194 17 H -0.197 1.197 18 H -0.193 1.193 19 C -0.116 4.116 20 C -0.106 4.106 21 C -0.169 4.169 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.176 0.824 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.637 7.139 0.014 17.190 hybrid contribution 1.672 -0.226 0.012 1.687 sum -13.966 6.913 0.026 15.583 Atomic orbital electron populations 1.20949 0.87851 1.04376 1.03697 1.20300 0.98189 0.91638 0.96714 1.21192 0.91818 0.99336 1.01752 1.20024 0.95272 0.94199 0.97394 1.21022 1.00226 0.93901 1.03129 1.20262 0.92554 0.95963 1.08983 1.19763 0.89290 0.90048 0.70545 1.92894 1.90605 1.83575 1.51921 1.92857 1.90592 1.82938 1.52480 1.19929 0.97120 0.88351 0.98449 1.21285 0.91686 0.93229 1.52687 0.92945 1.25841 1.04251 0.94710 0.93855 1.70038 1.37839 0.97978 1.50213 0.85395 0.78575 0.78053 0.78784 1.19401 1.19738 1.19313 1.21194 0.95119 0.97017 0.98259 1.20065 0.92121 0.97297 1.01128 1.20899 1.00429 0.92253 1.03309 0.89591 0.89836 0.89778 0.82403 0.90469 0.88351 0.92821 0.95173 0.95155 0.92144 0.86415 0.90129 0.88517 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.60 71.24 0.68 -0.99 16 2 C -0.07 -1.68 5.88 -19.86 -0.12 -1.80 16 3 C -0.12 -3.22 9.36 22.27 0.21 -3.01 16 4 C -0.07 -2.32 5.84 -19.86 -0.12 -2.44 16 5 C -0.13 -3.82 8.99 71.24 0.64 -3.18 16 6 C -0.18 -7.28 5.35 -19.87 -0.11 -7.38 16 7 C 0.34 16.50 1.26 29.85 0.04 16.54 16 8 F -0.21 -10.36 15.89 44.97 0.71 -9.65 16 9 F -0.21 -10.28 14.79 44.97 0.67 -9.62 16 10 C 0.00 -0.06 3.23 29.85 0.10 0.04 16 11 C -0.55 -33.07 8.58 25.60 0.22 -32.85 16 12 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 13 C 0.01 0.75 5.46 84.65 0.46 1.21 16 14 N -0.92 -55.34 13.29 21.45 0.28 -55.05 16 15 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 C -0.10 -3.76 8.63 22.27 0.19 -3.57 16 20 C -0.11 -3.13 5.88 -19.87 -0.12 -3.25 16 21 C -0.11 -2.51 9.60 71.23 0.68 -1.83 16 22 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 24 H 0.08 1.06 5.95 -2.39 -0.01 1.04 16 25 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 2.22 8.08 -2.39 -0.02 2.20 16 28 H 0.05 1.90 5.52 -2.39 -0.01 1.89 16 29 H 0.03 1.73 7.51 -2.39 -0.02 1.71 16 30 H 0.03 1.74 7.51 -2.39 -0.02 1.72 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.12 4.98 5.89 -2.91 -0.02 4.96 16 33 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.10 1.57 5.95 -2.39 -0.01 1.55 16 35 H 0.06 1.44 8.09 -2.38 -0.02 1.42 16 Total: -1.00 -68.83 293.61 7.55 -61.28 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.09 Total: 8.17 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 2.77 Total: -42.50 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.28 Total: -55.05 kcal Atomic # 9 Polarization: -20.65 SS G_CDS: 1.38 Total: -19.27 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -68.83 7.55 -61.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259066676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.178 kcal (2) G-P(sol) polarization free energy of solvation -68.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds