Wall clock time and date at job start Mon Mar 30 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 C 1.53000 * 109.46966 * 119.99887 * 2 1 3 5 5 F 1.39896 * 109.47503 * 55.00182 * 4 2 1 6 6 F 1.39897 * 109.47319 * 294.99723 * 4 2 1 7 7 C 1.50706 * 109.47116 * 175.00273 * 4 2 1 8 8 C 1.38253 * 120.00297 * 89.94935 * 7 4 2 9 9 C 1.38204 * 119.99863 * 179.97438 * 8 7 4 10 10 C 1.38261 * 120.00515 * 0.07163 * 9 8 7 11 11 C 1.38208 * 119.99533 * 359.95684 * 10 9 8 12 12 C 1.50701 * 119.99804 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46951 * 270.01763 * 12 11 10 14 14 H 1.08004 * 119.99929 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00012 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99923 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00310 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47017 * 59.99661 * 17 15 13 19 19 H 1.48498 * 109.47554 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47030 * 300.00231 * 17 15 13 21 21 C 1.38220 * 119.99654 * 270.00127 * 7 4 2 22 22 H 1.09002 * 109.46965 * 300.00342 * 1 2 3 23 23 H 1.08999 * 109.46844 * 59.99862 * 1 2 3 24 24 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47161 * 239.99945 * 2 1 3 26 26 H 1.09002 * 109.47181 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47406 * 299.99794 * 3 2 1 28 28 H 1.09002 * 109.47512 * 59.99993 * 3 2 1 29 29 H 1.08005 * 119.99943 * 0.04949 * 8 7 4 30 30 H 1.08004 * 120.00227 * 180.02562 * 9 8 7 31 31 H 1.07992 * 120.00025 * 179.97438 * 10 9 8 32 32 H 1.08990 * 109.47415 * 30.02092 * 12 11 10 33 33 H 1.09006 * 109.46768 * 150.01991 * 12 11 10 34 34 H 0.97000 * 120.00009 * 180.02562 * 16 15 13 35 35 H 1.08000 * 119.99660 * 0.27001 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 9 1.4822 -2.0028 1.3083 6 9 1.6700 0.0013 2.3886 7 6 3.5420 -0.8293 1.1890 8 6 4.3293 0.1719 1.7266 9 6 5.7067 0.0724 1.6718 10 6 6.2973 -1.0276 1.0779 11 6 5.5102 -2.0282 0.5399 12 6 6.1540 -3.2276 -0.1069 13 6 6.3674 -2.9533 -1.5733 14 1 6.0665 -2.0056 -1.9948 15 6 6.9457 -3.9128 -2.3770 16 7 7.3107 -5.0675 -1.8640 17 14 7.2109 -3.5727 -4.1945 18 1 8.0961 -2.3909 -4.3529 19 1 7.8451 -4.7545 -4.8319 20 1 5.9029 -3.3020 -4.8435 21 6 4.1324 -1.9290 0.5952 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.8679 1.0312 2.1906 30 1 6.3218 0.8543 2.0921 31 1 7.3736 -1.1051 1.0347 32 1 7.1142 -3.4255 0.3693 33 1 5.5048 -4.0954 0.0098 34 1 7.7179 -5.7424 -2.4293 35 1 3.5173 -2.7086 0.1706 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259443593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:04 Heat of formation + Delta-G solvation = -115.104228 kcal Electronic energy + Delta-G solvation = -18864.077361 eV Core-core repulsion = 15689.113828 eV Total energy + Delta-G solvation = -3174.963532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.08164 -48.05498 -40.30726 -36.64142 -35.42115 -33.18544 -32.29401 -29.10592 -28.00983 -27.06107 -25.31394 -23.23173 -22.03378 -21.22576 -18.60071 -18.40500 -18.27294 -17.61053 -16.79682 -16.55756 -16.01436 -15.46595 -15.12971 -14.78457 -14.57137 -14.45268 -14.28057 -14.08666 -13.82543 -13.46104 -13.34618 -13.27823 -13.01295 -12.91752 -12.64738 -12.44785 -12.27161 -12.12477 -11.96510 -11.61598 -11.52666 -11.32544 -10.62200 -9.85347 -9.52307 -8.22443 -6.36074 0.26539 0.51856 1.39222 1.41713 1.50055 2.37837 2.63420 2.78373 3.07447 3.10132 3.42773 3.60071 3.98350 4.08925 4.12089 4.26579 4.31427 4.44388 4.55766 4.67917 4.74433 4.83451 4.88209 4.91567 5.04430 5.12636 5.25581 5.27981 5.30796 5.32150 5.46793 5.52586 5.71398 5.95388 6.02249 6.16709 6.76171 7.32793 8.87255 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.005900 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.913750 B = 4744.590419 C = 5111.635807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.147 4.147 4 C 0.341 3.659 5 F -0.208 7.208 6 F -0.195 7.195 7 C -0.157 4.157 8 C -0.104 4.104 9 C -0.109 4.109 10 C -0.117 4.117 11 C -0.063 4.063 12 C 0.056 3.944 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.106 4.106 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.124 0.876 32 H 0.008 0.992 33 H -0.001 1.001 34 H 0.266 0.734 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 14.184 4.906 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.204 4.204 4 C 0.305 3.695 5 F -0.189 7.189 6 F -0.175 7.175 7 C -0.157 4.157 8 C -0.121 4.121 9 C -0.127 4.127 10 C -0.135 4.135 11 C -0.063 4.063 12 C 0.019 3.981 13 C -0.568 4.568 14 H 0.075 0.925 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.125 4.125 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.178 0.822 31 H 0.142 0.858 32 H 0.026 0.974 33 H 0.018 0.982 34 H 0.075 0.925 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.298 14.001 4.903 18.059 hybrid contribution 0.318 -0.885 -0.743 1.198 sum -9.980 13.117 4.160 16.999 Atomic orbital electron populations 1.21855 0.91885 1.02808 1.04019 1.22130 0.98961 0.99020 0.94632 1.21870 1.01769 0.92635 1.04080 1.19696 0.88977 0.75526 0.85294 1.92964 1.87016 1.42021 1.96913 1.92949 1.92723 1.77746 1.54124 1.20234 0.93560 0.97629 1.04323 1.21034 0.93727 0.98307 0.99075 1.21398 0.94698 0.97823 0.98779 1.21337 1.00316 0.94030 0.97815 1.20360 0.93541 0.97320 0.95113 1.18111 0.94445 0.90715 0.94851 1.21329 1.40398 1.01208 0.93824 0.92473 1.25941 0.94973 0.94647 1.03783 1.70078 1.42268 1.06754 1.37925 0.85496 0.78829 0.77938 0.78811 1.18985 1.20617 1.19279 1.20710 0.94594 0.97540 0.99634 0.91422 0.89346 0.92635 0.89070 0.92182 0.89668 0.90844 0.83086 0.82210 0.85807 0.97359 0.98243 0.92517 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.94 71.98 0.64 -2.26 16 2 C -0.13 -3.05 2.59 -10.79 -0.03 -3.08 16 3 C -0.15 -2.83 8.59 71.98 0.62 -2.21 16 4 C 0.34 10.04 1.54 29.85 0.05 10.08 16 5 F -0.21 -7.01 15.50 44.97 0.70 -6.31 16 6 F -0.19 -5.41 15.18 44.97 0.68 -4.73 16 7 C -0.16 -5.18 4.57 -19.86 -0.09 -5.27 16 8 C -0.10 -2.91 7.66 22.27 0.17 -2.74 16 9 C -0.11 -3.13 10.05 22.27 0.22 -2.91 16 10 C -0.12 -4.32 9.70 22.27 0.22 -4.11 16 11 C -0.06 -2.79 5.07 -19.87 -0.10 -2.89 16 12 C 0.06 3.00 5.10 29.10 0.15 3.15 16 13 C -0.53 -30.09 9.09 25.60 0.23 -29.85 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.00 0.28 5.46 84.65 0.46 0.74 16 16 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 17 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C -0.11 -4.32 9.05 22.27 0.20 -4.11 16 22 H 0.07 1.24 7.94 -2.39 -0.02 1.22 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 1.28 6.27 -2.39 -0.01 1.27 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.26 7.69 -2.39 -0.02 1.24 16 29 H 0.15 3.32 7.59 -2.91 -0.02 3.30 16 30 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.01 0.46 8.08 -2.39 -0.02 0.44 16 33 H 0.00 -0.04 8.09 -2.38 -0.02 -0.06 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.11 4.60 7.61 -2.91 -0.02 4.57 16 Total: -1.00 -64.35 299.76 7.50 -56.84 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.07 Total: 9.65 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 2.74 Total: -45.46 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 1.38 Total: -11.05 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.35 7.50 -56.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259443593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.261 kcal (2) G-P(sol) polarization free energy of solvation -64.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds