Wall clock time and date at job start Mon Mar 30 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 C 1.52999 * 109.47162 * 120.00559 * 2 1 3 5 5 C 1.52996 * 109.47141 * 65.04231 * 4 2 1 6 6 F 1.39903 * 109.47097 * 54.29431 * 5 4 2 7 7 F 1.39891 * 109.47185 * 294.28847 * 5 4 2 8 8 C 1.50700 * 109.46740 * 174.29019 * 5 4 2 9 9 C 1.38665 * 119.87530 * 270.29671 * 8 5 4 10 10 C 1.38613 * 120.49795 * 180.26399 * 9 8 5 11 11 C 1.37640 * 120.25224 * 359.43661 * 10 9 8 12 12 C 1.40702 * 119.74052 * 0.28561 * 11 10 9 13 13 C 1.41391 * 120.24284 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00178 * 209.99943 * 13 12 11 15 15 C 1.39948 * 120.00196 * 29.99876 * 13 12 11 16 16 N 1.30827 * 119.99952 * 11.23345 * 15 13 12 17 17 Si 1.86802 * 120.00440 * 191.23030 * 15 13 12 18 18 H 1.48504 * 109.46903 * 59.99865 * 17 15 13 19 19 H 1.48494 * 109.47252 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46989 * 300.00257 * 17 15 13 21 21 C 1.37598 * 119.87925 * 90.00241 * 8 5 4 22 22 H 1.08995 * 109.47180 * 48.80627 * 1 2 3 23 23 H 1.08998 * 109.46861 * 168.79799 * 1 2 3 24 24 H 1.08993 * 109.46963 * 288.79550 * 1 2 3 25 25 H 1.09008 * 109.47041 * 240.00511 * 2 1 3 26 26 H 1.09004 * 109.46886 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47651 * 299.99999 * 3 2 1 28 28 H 1.09008 * 109.46804 * 60.00366 * 3 2 1 29 29 H 1.09003 * 109.47066 * 305.03940 * 4 2 1 30 30 H 1.09006 * 109.46804 * 185.04230 * 4 2 1 31 31 H 1.07997 * 119.74939 * 359.97438 * 9 8 5 32 32 H 1.08004 * 119.87661 * 179.71953 * 10 9 8 33 33 H 1.08001 * 120.13096 * 180.25516 * 11 10 9 34 34 H 0.97000 * 120.00536 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.12330 * 0.04231 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6362 -2.1958 1.1872 6 9 2.0846 -2.7520 -0.0156 7 9 0.2431 -2.3011 1.2591 8 6 2.2563 -2.9354 2.3446 9 6 3.5123 -3.5064 2.2062 10 6 4.0924 -4.1942 3.2606 11 6 3.4309 -4.3077 4.4622 12 6 2.1584 -3.7273 4.6159 13 6 1.4690 -3.8379 5.8454 14 1 0.3892 -3.8534 5.8597 15 6 2.1859 -3.9273 7.0440 16 7 3.4724 -3.6898 7.0561 17 14 1.3060 -4.3857 8.6268 18 1 0.6868 -5.7273 8.4782 19 1 2.2817 -4.4115 9.7459 20 1 0.2499 -3.3822 8.9145 21 6 1.5766 -3.0364 3.5368 22 1 -0.3633 0.6768 -0.7733 23 1 -0.3633 -1.0081 -0.1996 24 1 -0.3633 0.3311 0.9728 25 1 1.8934 -0.5138 -0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6049 -0.2624 2.1369 30 1 3.1263 -0.6438 1.2954 31 1 4.0405 -3.4185 1.2683 32 1 5.0693 -4.6389 3.1403 33 1 3.8865 -4.8405 5.2837 34 1 3.9693 -3.7514 7.8868 35 1 0.6001 -2.5874 3.6437 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259446412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:18 Heat of formation + Delta-G solvation = -108.158085 kcal Electronic energy + Delta-G solvation = -18896.102158 eV Core-core repulsion = 15721.439833 eV Total energy + Delta-G solvation = -3174.662325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.43437 -46.37998 -37.67141 -36.13951 -33.80590 -31.05103 -29.92683 -27.86920 -27.04456 -25.34172 -23.28903 -20.87388 -20.21974 -20.00548 -17.62279 -16.81009 -16.10364 -15.86187 -15.12000 -14.65760 -14.51965 -13.80132 -13.48508 -13.38306 -13.10493 -12.80019 -12.75515 -12.42276 -12.17997 -11.93308 -11.84147 -11.71398 -11.36594 -11.20192 -11.10365 -10.83047 -10.70355 -10.56712 -10.55466 -10.32265 -9.60441 -9.49397 -9.26046 -7.64120 -7.46801 -6.77903 -4.45872 2.62685 2.75362 3.04730 3.07780 3.14566 3.90768 4.31262 4.51445 4.73222 4.90653 4.98803 5.19677 5.28418 5.43165 5.66050 5.69887 5.75617 5.82043 5.94189 6.07200 6.12325 6.20010 6.27118 6.34882 6.40893 6.47338 6.81205 6.94294 7.08900 7.20834 7.39247 7.67282 7.88738 7.93878 8.12461 8.52375 8.80278 8.84118 10.18049 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.029385 B = 0.005607 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.651522 B = 4992.965507 C = 5325.112304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.143 4.143 4 C -0.145 4.145 5 C 0.342 3.658 6 F -0.205 7.205 7 F -0.199 7.199 8 C -0.134 4.134 9 C -0.205 4.205 10 C -0.110 4.110 11 C -0.142 4.142 12 C 0.107 3.893 13 C -0.465 4.465 14 H 0.078 0.922 15 C 0.074 3.926 16 N -0.804 5.804 17 Si 0.912 3.088 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.186 4.186 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.281 0.719 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 5.503 -7.464 9.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.183 4.183 5 C 0.306 3.694 6 F -0.186 7.186 7 F -0.180 7.180 8 C -0.134 4.134 9 C -0.225 4.225 10 C -0.128 4.128 11 C -0.161 4.161 12 C 0.105 3.895 13 C -0.495 4.495 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.430 5.430 17 Si 0.737 3.263 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.206 4.206 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.334 5.511 -7.319 9.258 hybrid contribution -0.327 -0.228 0.705 0.810 sum -1.661 5.282 -6.613 8.625 Atomic orbital electron populations 1.22061 0.94770 1.02692 1.01691 1.21154 0.96530 0.96396 0.97926 1.21807 1.00960 0.95593 1.01711 1.22647 1.03607 0.91922 1.00161 1.19538 0.75014 0.93683 0.81130 1.92922 1.89119 1.87585 1.48979 1.92915 1.31611 1.97178 1.96337 1.19628 0.96949 1.03006 0.93858 1.20129 0.96069 1.07483 0.98790 1.20680 0.98389 0.99801 0.93941 1.21463 0.97053 1.01652 0.95932 1.17563 0.91911 0.88164 0.91854 1.19511 0.94630 1.45033 0.90292 0.90381 1.25876 0.94805 0.92400 1.01135 1.69764 1.08115 1.35689 1.29400 0.86303 0.79843 0.80214 0.79976 1.18847 1.20335 1.19011 1.20823 1.00680 1.05333 0.93729 0.93159 0.91462 0.92458 0.90655 0.92628 0.92699 0.92539 0.88862 0.89019 0.88662 0.88752 0.86128 0.90807 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.25 37.16 0.31 -1.72 16 2 C -0.10 -1.35 2.82 -90.62 -0.26 -1.61 16 3 C -0.14 -1.58 9.17 37.16 0.34 -1.24 16 4 C -0.15 -2.31 4.35 -26.73 -0.12 -2.43 16 5 C 0.34 6.54 1.81 -27.89 -0.05 6.49 16 6 F -0.21 -3.94 15.37 2.25 0.03 -3.90 16 7 F -0.20 -3.89 13.29 2.25 0.03 -3.86 16 8 C -0.13 -2.99 4.98 -104.70 -0.52 -3.51 16 9 C -0.21 -4.57 9.41 -39.29 -0.37 -4.94 16 10 C -0.11 -2.52 10.02 -39.66 -0.40 -2.92 16 11 C -0.14 -3.61 8.65 -38.87 -0.34 -3.94 16 12 C 0.11 2.82 5.53 -106.83 -0.59 2.23 16 13 C -0.46 -12.16 9.06 -37.74 -0.34 -12.51 16 14 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 15 C 0.07 1.84 5.24 -17.34 -0.09 1.75 16 16 N -0.80 -20.45 10.95 55.55 0.61 -19.84 16 17 Si 0.91 18.50 29.57 -169.99 -5.03 13.48 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 C -0.19 -4.53 9.14 -38.88 -0.36 -4.89 16 22 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 23 H 0.07 0.97 6.27 -51.93 -0.33 0.65 16 24 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 25 H 0.08 1.02 7.51 -51.92 -0.39 0.63 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.10 1.93 7.60 -52.49 -0.40 1.53 16 32 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 33 H 0.12 3.15 6.34 -52.49 -0.33 2.82 16 34 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 35 H 0.10 2.38 7.59 -52.48 -0.40 1.98 16 LS Contribution 295.31 15.07 4.45 4.45 Total: -1.00 -26.55 295.31 -7.45 -34.00 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.77 Total: 4.90 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -2.78 Total: -29.22 kcal Atomic # 7 Polarization: -20.45 SS G_CDS: 0.61 Total: -19.84 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.06 Total: -7.76 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.55 -7.45 -34.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259446412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.160 kcal (2) G-P(sol) polarization free energy of solvation -26.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds