Wall clock time and date at job start Mon Mar 30 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 C 1.52999 * 109.47162 * 120.00559 * 2 1 3 5 5 C 1.52996 * 109.47141 * 65.04231 * 4 2 1 6 6 F 1.39903 * 109.47097 * 54.29431 * 5 4 2 7 7 F 1.39891 * 109.47185 * 294.28847 * 5 4 2 8 8 C 1.50700 * 109.46740 * 174.29019 * 5 4 2 9 9 C 1.38665 * 119.87530 * 270.29671 * 8 5 4 10 10 C 1.38613 * 120.49795 * 180.26399 * 9 8 5 11 11 C 1.37640 * 120.25224 * 359.43661 * 10 9 8 12 12 C 1.40702 * 119.74052 * 0.28561 * 11 10 9 13 13 C 1.41391 * 120.24284 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00178 * 209.99943 * 13 12 11 15 15 C 1.39948 * 120.00196 * 29.99876 * 13 12 11 16 16 N 1.30827 * 119.99952 * 11.23345 * 15 13 12 17 17 Si 1.86802 * 120.00440 * 191.23030 * 15 13 12 18 18 H 1.48504 * 109.46903 * 59.99865 * 17 15 13 19 19 H 1.48494 * 109.47252 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46989 * 300.00257 * 17 15 13 21 21 C 1.37598 * 119.87925 * 90.00241 * 8 5 4 22 22 H 1.08995 * 109.47180 * 48.80627 * 1 2 3 23 23 H 1.08998 * 109.46861 * 168.79799 * 1 2 3 24 24 H 1.08993 * 109.46963 * 288.79550 * 1 2 3 25 25 H 1.09008 * 109.47041 * 240.00511 * 2 1 3 26 26 H 1.09004 * 109.46886 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47651 * 299.99999 * 3 2 1 28 28 H 1.09008 * 109.46804 * 60.00366 * 3 2 1 29 29 H 1.09003 * 109.47066 * 305.03940 * 4 2 1 30 30 H 1.09006 * 109.46804 * 185.04230 * 4 2 1 31 31 H 1.07997 * 119.74939 * 359.97438 * 9 8 5 32 32 H 1.08004 * 119.87661 * 179.71953 * 10 9 8 33 33 H 1.08001 * 120.13096 * 180.25516 * 11 10 9 34 34 H 0.97000 * 120.00536 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.12330 * 0.04231 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6362 -2.1958 1.1872 6 9 2.0846 -2.7520 -0.0156 7 9 0.2431 -2.3011 1.2591 8 6 2.2563 -2.9354 2.3446 9 6 3.5123 -3.5064 2.2062 10 6 4.0924 -4.1942 3.2606 11 6 3.4309 -4.3077 4.4622 12 6 2.1584 -3.7273 4.6159 13 6 1.4690 -3.8379 5.8454 14 1 0.3892 -3.8534 5.8597 15 6 2.1859 -3.9273 7.0440 16 7 3.4724 -3.6898 7.0561 17 14 1.3060 -4.3857 8.6268 18 1 0.6868 -5.7273 8.4782 19 1 2.2817 -4.4115 9.7459 20 1 0.2499 -3.3822 8.9145 21 6 1.5766 -3.0364 3.5368 22 1 -0.3633 0.6768 -0.7733 23 1 -0.3633 -1.0081 -0.1996 24 1 -0.3633 0.3311 0.9728 25 1 1.8934 -0.5138 -0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6049 -0.2624 2.1369 30 1 3.1263 -0.6438 1.2954 31 1 4.0405 -3.4185 1.2683 32 1 5.0693 -4.6389 3.1403 33 1 3.8865 -4.8405 5.2837 34 1 3.9693 -3.7514 7.8868 35 1 0.6001 -2.5874 3.6437 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259446412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:17 Heat of formation + Delta-G solvation = -119.075821 kcal Electronic energy + Delta-G solvation = -18896.575587 eV Core-core repulsion = 15721.439833 eV Total energy + Delta-G solvation = -3175.135753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.98555 -47.93524 -39.51289 -37.26781 -35.65540 -32.71531 -31.81986 -29.32777 -28.00206 -27.25028 -24.82279 -22.73594 -21.95268 -21.13850 -19.40384 -18.34762 -17.69091 -17.49432 -16.83819 -16.41093 -15.75726 -15.28737 -15.15269 -14.85110 -14.57096 -14.39296 -14.12213 -14.00838 -13.62839 -13.41122 -13.15916 -12.98501 -12.96072 -12.78130 -12.68735 -12.47998 -12.22983 -11.91765 -11.77845 -11.60435 -11.42859 -11.18327 -11.04588 -9.51027 -9.36978 -8.63799 -6.43023 0.77891 0.90363 1.38777 1.49343 1.50917 2.20755 2.66467 2.84001 3.31301 3.45438 3.58137 3.77806 4.03011 4.05934 4.33727 4.41281 4.55801 4.65253 4.72663 4.82091 4.90435 4.93784 4.99258 5.02913 5.06882 5.20344 5.21997 5.33860 5.42431 5.43532 5.52278 5.81604 6.00052 6.00905 6.22732 6.59336 6.87774 6.91154 8.34130 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.029385 B = 0.005607 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.651522 B = 4992.965507 C = 5325.112304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.343 3.657 6 F -0.203 7.203 7 F -0.203 7.203 8 C -0.135 4.135 9 C -0.204 4.204 10 C -0.109 4.109 11 C -0.165 4.165 12 C 0.079 3.921 13 C -0.501 4.501 14 H 0.074 0.926 15 C 0.036 3.964 16 N -0.832 5.832 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.261 1.261 21 C -0.202 4.202 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.289 0.711 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 6.351 -8.093 10.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.116 4.116 3 C -0.197 4.197 4 C -0.178 4.178 5 C 0.307 3.693 6 F -0.184 7.184 7 F -0.184 7.184 8 C -0.136 4.136 9 C -0.224 4.224 10 C -0.127 4.127 11 C -0.185 4.185 12 C 0.077 3.923 13 C -0.531 4.531 14 H 0.093 0.907 15 C -0.178 4.178 16 N -0.458 5.458 17 Si 0.805 3.195 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.185 1.185 21 C -0.221 4.221 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.190 6.363 -7.968 10.266 hybrid contribution -0.336 -0.501 0.797 0.999 sum -1.526 5.863 -7.172 9.388 Atomic orbital electron populations 1.22048 0.94693 1.02168 1.02278 1.21157 0.96577 0.97620 0.96272 1.21783 1.01336 0.93850 1.02714 1.22656 1.03981 0.89612 1.01599 1.19621 0.74631 0.95136 0.79920 1.92922 1.89073 1.87814 1.48641 1.92913 1.31903 1.97301 1.96316 1.19989 0.96991 1.02291 0.94342 1.20467 0.96032 1.06385 0.99477 1.20990 0.99311 0.99250 0.93134 1.21440 0.97437 1.02868 0.96734 1.17915 0.92748 0.88958 0.92727 1.19760 0.94741 1.47159 0.91440 0.90738 1.26702 0.95470 0.91586 1.04074 1.69816 1.09399 1.35901 1.30703 0.85221 0.78762 0.79803 0.75744 1.18557 1.19055 1.18523 1.20890 1.00945 1.05883 0.94430 0.90897 0.93242 0.92860 0.90670 0.92068 0.90904 0.92368 0.89187 0.88472 0.86123 0.85999 0.87532 0.90066 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 8.25 71.98 0.59 -3.17 16 2 C -0.10 -2.39 2.82 -10.79 -0.03 -2.42 16 3 C -0.14 -2.67 9.17 71.98 0.66 -2.01 16 4 C -0.14 -4.26 4.35 30.59 0.13 -4.12 16 5 C 0.34 12.77 1.81 29.85 0.05 12.82 16 6 F -0.20 -7.46 15.37 44.97 0.69 -6.77 16 7 F -0.20 -7.86 13.29 44.97 0.60 -7.27 16 8 C -0.14 -6.00 4.98 -19.91 -0.10 -6.10 16 9 C -0.20 -8.83 9.41 22.46 0.21 -8.62 16 10 C -0.11 -4.94 10.02 22.22 0.22 -4.71 16 11 C -0.17 -8.60 8.65 22.73 0.20 -8.40 16 12 C 0.08 4.26 5.53 -21.29 -0.12 4.14 16 13 C -0.50 -27.06 9.06 23.46 0.21 -26.84 16 14 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 15 C 0.04 1.79 5.24 85.26 0.45 2.24 16 16 N -0.83 -42.99 10.95 21.83 0.24 -42.75 16 17 Si 0.98 38.03 29.57 68.60 2.03 40.06 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 C -0.20 -10.05 9.14 22.73 0.21 -9.84 16 22 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 23 H 0.05 1.37 6.27 -2.39 -0.01 1.36 16 24 H 0.05 1.32 8.07 -2.39 -0.02 1.30 16 25 H 0.07 1.86 7.51 -2.38 -0.02 1.84 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.09 2.78 8.10 -2.39 -0.02 2.76 16 30 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 31 H 0.12 4.57 7.60 -2.91 -0.02 4.55 16 32 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.11 5.75 6.34 -2.91 -0.02 5.73 16 34 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 35 H 0.10 4.82 7.59 -2.91 -0.02 4.79 16 Total: -1.00 -57.17 295.31 7.32 -49.85 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.07 Total: 23.91 kcal Atomic # 6 Polarization: -59.73 SS G_CDS: 2.69 Total: -57.04 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.24 Total: -42.75 kcal Atomic # 9 Polarization: -15.33 SS G_CDS: 1.29 Total: -14.04 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -57.17 7.32 -49.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259446412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.227 kcal (2) G-P(sol) polarization free energy of solvation -57.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds