Wall clock time and date at job start Mon Mar 30 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47375 * 2 1 4 4 C 1.53001 * 109.47375 * 180.02562 * 3 2 1 5 5 F 1.39901 * 109.46864 * 60.00456 * 4 3 2 6 6 F 1.39896 * 109.47093 * 299.99729 * 4 3 2 7 7 C 1.50704 * 109.47144 * 179.97438 * 4 3 2 8 8 C 1.38232 * 120.00190 * 270.00475 * 7 4 3 9 9 C 1.38237 * 120.00019 * 180.02562 * 8 7 4 10 10 C 1.38231 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99766 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47151 * 90.00279 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27762 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 C 1.38233 * 120.00119 * 0.25187 * 10 9 8 21 21 C 1.38232 * 119.99735 * 359.49690 * 20 10 9 22 22 H 1.08995 * 109.47006 * 60.00263 * 1 2 3 23 23 H 1.08997 * 109.47044 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46930 * 299.99896 * 1 2 3 25 25 H 1.08996 * 109.47083 * 239.99830 * 2 1 3 26 26 H 1.09002 * 109.47590 * 120.00022 * 2 1 3 27 27 H 1.08996 * 109.47154 * 59.99873 * 3 2 1 28 28 H 1.09000 * 109.47162 * 300.00145 * 3 2 1 29 29 H 1.08005 * 119.99795 * 359.97438 * 8 7 4 30 30 H 1.08003 * 119.99517 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47088 * 329.99418 * 11 10 9 32 32 H 1.09007 * 109.46560 * 209.99923 * 11 10 9 33 33 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.00409 * 179.72430 * 20 10 9 35 35 H 1.08010 * 120.00077 * 180.22689 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 9 4.0359 0.7832 -1.1433 6 9 4.0369 0.7829 1.1413 7 6 4.0724 2.8633 -0.0013 8 6 4.3022 3.5147 -1.1987 9 6 4.7635 4.8178 -1.1992 10 6 4.9945 5.4697 -0.0024 11 6 5.4980 6.8901 -0.0030 12 6 4.3266 7.8383 -0.0032 13 1 3.3184 7.4510 -0.0034 14 6 4.5420 9.2000 -0.0096 15 7 5.7697 9.6717 -0.0098 16 14 3.0900 10.3753 -0.0178 17 1 2.7029 10.6936 1.3801 18 1 3.4693 11.6258 -0.7232 19 1 1.9436 9.7408 -0.7166 20 6 4.7692 4.8168 1.1950 21 6 4.3029 3.5155 1.1956 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6768 1.9563 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 4.1221 3.0051 -2.1338 30 1 4.9434 5.3265 -2.1348 31 1 6.1037 7.0605 -0.8931 32 1 6.1037 7.0612 0.8870 33 1 5.9212 10.6297 -0.0146 34 1 4.9538 5.3246 2.1302 35 1 4.1234 3.0065 2.1312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259500242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:09 Heat of formation + Delta-G solvation = -119.371007 kcal Electronic energy + Delta-G solvation = -18278.353494 eV Core-core repulsion = 15103.204940 eV Total energy + Delta-G solvation = -3175.148554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.03425 -48.01784 -40.25994 -36.25839 -35.44385 -33.55012 -31.86638 -30.58314 -28.44899 -25.82542 -23.90634 -23.62321 -22.20675 -21.57559 -18.63967 -18.46486 -18.46269 -17.49563 -16.78324 -16.14309 -15.89905 -15.76199 -15.31438 -14.70299 -14.61738 -14.51981 -14.44018 -14.12481 -13.77414 -13.51857 -13.40346 -13.31618 -13.09298 -12.84612 -12.62180 -12.48708 -12.15179 -11.91130 -11.81814 -11.65251 -11.58048 -11.28318 -10.62060 -9.86921 -9.57162 -8.22383 -6.35650 0.28081 0.46736 1.40689 1.41184 1.52683 2.38282 2.66910 2.77698 3.09539 3.14635 3.46003 3.60429 3.98832 4.08308 4.12743 4.17862 4.27998 4.51246 4.56445 4.59087 4.76441 4.78044 4.90622 4.96509 5.01283 5.17725 5.23216 5.30785 5.31582 5.40095 5.44216 5.47496 5.71899 5.97238 5.98994 6.16216 6.76881 7.33401 8.87556 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.004573 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.965962 B = 6121.946324 C = 6553.863952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.150 4.150 4 C 0.345 3.655 5 F -0.202 7.202 6 F -0.202 7.202 7 C -0.184 4.184 8 C -0.082 4.082 9 C -0.134 4.134 10 C -0.043 4.043 11 C 0.052 3.948 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.966 3.034 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.134 4.134 21 C -0.082 4.082 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.266 0.734 34 H 0.124 0.876 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.930 -17.720 0.023 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.188 4.188 4 C 0.309 3.691 5 F -0.183 7.183 6 F -0.183 7.183 7 C -0.185 4.185 8 C -0.100 4.100 9 C -0.152 4.152 10 C -0.043 4.043 11 C 0.015 3.985 12 C -0.567 4.567 13 H 0.075 0.925 14 C -0.192 4.192 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.189 1.189 20 C -0.152 4.152 21 C -0.100 4.100 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.808 -17.609 0.019 19.689 hybrid contribution 0.072 0.997 -0.002 0.999 sum -8.735 -16.612 0.017 18.769 Atomic orbital electron populations 1.21723 0.93667 1.02659 1.02448 1.21536 0.97766 0.94226 1.02941 1.22672 0.88628 1.00807 1.06649 1.19575 0.94456 0.84061 0.70963 1.92970 1.90856 1.82862 1.51607 1.92968 1.90827 1.82839 1.51651 1.20236 1.07631 0.95401 0.95254 1.20990 0.97200 0.94001 0.97841 1.21119 1.01316 0.94849 0.97948 1.20581 0.93989 0.95897 0.93866 1.18172 0.95740 0.88294 0.96250 1.21343 0.92871 0.91292 1.51233 0.92495 1.25916 0.98670 1.00186 0.94476 1.70074 1.21731 1.14026 1.51124 0.85433 0.79084 0.77891 0.78586 1.19668 1.20579 1.18893 1.21120 1.01295 0.94872 0.97935 1.20991 0.97168 0.94018 0.97844 0.92182 0.91467 0.92181 0.91397 0.91390 0.88025 0.88045 0.83732 0.85823 0.97491 0.97494 0.92509 0.85798 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.13 -2.12 5.69 30.59 0.17 -1.95 16 3 C -0.15 -2.94 4.79 30.59 0.15 -2.80 16 4 C 0.35 8.77 1.86 29.85 0.06 8.83 16 5 F -0.20 -5.40 15.69 44.97 0.71 -4.69 16 6 F -0.20 -5.39 15.69 44.97 0.71 -4.69 16 7 C -0.18 -5.54 4.99 -19.87 -0.10 -5.64 16 8 C -0.08 -2.60 9.40 22.27 0.21 -2.39 16 9 C -0.13 -5.09 9.70 22.27 0.22 -4.88 16 10 C -0.04 -1.87 5.07 -19.87 -0.10 -1.97 16 11 C 0.05 2.75 5.10 29.10 0.15 2.90 16 12 C -0.53 -29.62 9.09 25.60 0.23 -29.39 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.01 0.33 5.46 84.65 0.46 0.79 16 15 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 16 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 20 C -0.13 -5.08 9.70 22.27 0.22 -4.86 16 21 C -0.08 -2.59 9.40 22.27 0.21 -2.38 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 25 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 26 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.14 3.80 7.60 -2.91 -0.02 3.77 16 30 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 31 H 0.01 0.38 8.09 -2.39 -0.02 0.36 16 32 H 0.01 0.38 8.08 -2.38 -0.02 0.36 16 33 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.15 3.79 7.61 -2.91 -0.02 3.77 16 Total: -1.00 -61.93 305.54 7.37 -54.56 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.06 Total: 9.38 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 2.58 Total: -44.98 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.28 Total: -55.01 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 1.41 Total: -9.38 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -61.93 7.37 -54.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259500242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.812 kcal (2) G-P(sol) polarization free energy of solvation -61.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds