Wall clock time and date at job start Mon Mar 30 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.46965 * 2 1 4 4 C 1.46897 * 111.00182 * 155.61878 * 3 2 1 5 5 C 1.53004 * 109.47530 * 200.97999 * 4 3 2 6 6 C 1.46905 * 111.00313 * 279.57009 * 3 2 1 7 7 H 1.08998 * 109.46566 * 52.62054 * 6 3 2 8 8 C 1.50690 * 109.47717 * 172.62395 * 6 3 2 9 9 H 1.08001 * 120.00211 * 118.71326 * 8 6 3 10 10 C 1.37879 * 119.99805 * 298.71987 * 8 6 3 11 11 N 1.31506 * 120.00173 * 1.53846 * 10 8 6 12 12 Si 1.86808 * 119.99923 * 181.53713 * 10 8 6 13 13 H 1.48496 * 109.47115 * 59.99703 * 12 10 8 14 14 H 1.48496 * 109.47268 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46895 * 300.00074 * 12 10 8 16 16 C 1.50700 * 109.47098 * 292.62656 * 6 3 2 17 17 S 1.76196 * 126.03616 * 284.18878 * 16 6 3 18 18 C 1.70986 * 90.28156 * 179.97438 * 17 16 6 19 19 N 1.29022 * 110.16576 * 0.34205 * 18 17 16 20 20 C 1.31781 * 117.12759 * 359.72611 * 19 18 17 21 21 C 1.50700 * 122.75246 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.46930 * 65.31822 * 1 2 3 23 23 H 1.08996 * 109.47125 * 185.31798 * 1 2 3 24 24 H 1.09001 * 109.47066 * 305.32032 * 1 2 3 25 25 H 1.08991 * 109.47040 * 239.99952 * 2 1 3 26 26 H 1.09006 * 109.46976 * 119.99548 * 2 1 3 27 27 H 1.09003 * 109.47299 * 320.97989 * 4 3 2 28 28 H 1.09001 * 109.47420 * 80.97795 * 4 3 2 29 29 H 1.09000 * 109.47319 * 165.29210 * 5 4 3 30 30 H 1.09007 * 109.46473 * 285.28275 * 5 4 3 31 31 H 1.08996 * 109.47218 * 45.28676 * 5 4 3 32 32 H 0.97009 * 120.00259 * 180.02562 * 11 10 8 33 33 H 1.07999 * 124.91591 * 180.02562 * 18 17 16 34 34 H 1.09009 * 109.47267 * 269.99937 * 21 20 19 35 35 H 1.09000 * 109.46949 * 30.00129 * 21 20 19 36 36 H 1.09002 * 109.47004 * 150.00597 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3728 1.4650 0.5661 5 6 3.6462 2.8959 1.0339 6 6 1.9802 1.9574 -1.3524 7 1 0.9820 1.8306 -1.7715 8 6 2.3147 3.4252 -1.2866 9 1 3.1815 3.8054 -1.8068 10 6 1.5142 4.2829 -0.5623 11 7 0.4762 3.8153 0.0959 12 14 1.9042 6.1092 -0.5159 13 1 1.8638 6.6592 -1.8946 14 1 0.9006 6.8085 0.3261 15 1 3.2587 6.3117 0.0583 16 6 2.9852 1.2518 -2.2260 17 16 4.7311 1.4866 -2.1952 18 6 4.9169 0.3315 -3.4421 19 7 3.7652 -0.1292 -3.7969 20 6 2.7089 0.3425 -3.1656 21 6 1.3046 -0.1062 -3.4781 22 1 -0.3633 0.4291 -0.9338 23 1 -0.3633 -1.0232 0.0952 24 1 -0.3633 0.5941 0.8385 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.4530 0.7842 1.4136 28 1 4.1020 1.1858 -0.1944 29 1 4.5244 2.9056 1.6795 30 1 3.8251 3.5332 0.1678 31 1 2.7842 3.2682 1.5873 32 1 -0.0873 4.4188 0.6053 33 1 5.8612 0.0345 -3.8740 34 1 0.8824 0.5343 -4.2527 35 1 1.3225 -1.1378 -3.8295 36 1 0.6931 -0.0393 -2.5783 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259673589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:22 Heat of formation + Delta-G solvation = 54.137206 kcal Electronic energy + Delta-G solvation = -18092.082693 eV Core-core repulsion = 15510.591158 eV Total energy + Delta-G solvation = -2581.491535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36230 -37.17533 -32.68441 -31.60277 -30.96921 -29.06650 -26.77035 -25.88996 -24.13268 -22.34384 -21.39551 -20.03251 -17.88909 -17.40665 -16.34126 -15.41039 -14.79116 -14.57264 -14.18351 -13.68435 -13.16632 -12.96764 -12.68413 -12.20236 -12.04801 -12.00503 -11.78649 -11.29470 -11.15794 -11.01964 -10.89768 -10.59302 -10.51528 -10.41142 -10.13865 -9.97376 -9.78020 -9.18995 -8.88686 -8.36597 -8.30622 -7.97089 -6.92573 -5.98701 -4.05764 1.46817 2.14663 2.57401 3.28940 3.34289 3.37507 3.45713 4.39438 4.83867 5.03256 5.45748 5.66132 5.81855 5.85549 6.06126 6.09367 6.12703 6.17367 6.29522 6.33463 6.44753 6.46201 6.49494 6.66242 6.75412 6.86572 6.92922 7.13964 7.25825 7.28173 7.68306 7.78587 8.02988 8.36417 8.42058 8.59354 8.93956 9.53840 11.04930 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.010592 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.103875 B = 2642.763834 C = 3082.433449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.040 3.960 3 N -0.482 5.482 4 C 0.059 3.941 5 C -0.137 4.137 6 C 0.282 3.718 7 H 0.067 0.933 8 C -0.528 4.528 9 H 0.058 0.942 10 C 0.093 3.907 11 N -0.838 5.838 12 Si 0.874 3.126 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.179 4.179 17 S 0.133 5.867 18 C -0.043 4.043 19 N -0.470 5.470 20 C 0.018 3.982 21 C -0.072 4.072 22 H 0.052 0.948 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.015 0.985 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.258 0.742 33 H 0.183 0.817 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 -5.287 -1.303 6.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 N -0.204 5.204 4 C -0.070 4.070 5 C -0.194 4.194 6 C 0.174 3.826 7 H 0.085 0.915 8 C -0.567 4.567 9 H 0.076 0.924 10 C -0.115 4.115 11 N -0.472 5.472 12 Si 0.702 3.298 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.302 4.302 17 S 0.386 5.614 18 C -0.340 4.340 19 N -0.184 5.184 20 C -0.113 4.113 21 C -0.132 4.132 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.034 0.966 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.200 0.800 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.327 -4.777 -0.744 6.488 hybrid contribution 0.112 0.207 -0.680 0.720 sum 4.439 -4.570 -1.425 6.529 Atomic orbital electron populations 1.21640 0.95508 0.98902 1.02938 1.22159 0.96284 0.91708 0.98740 1.62911 1.20937 1.14219 1.22324 1.22163 0.90320 0.97787 0.96745 1.22003 0.98700 0.97048 1.01637 1.18229 0.90823 0.92289 0.81271 0.91538 1.20733 1.12389 0.90179 1.33365 0.92419 1.24812 0.94833 0.97389 0.94510 1.70053 1.14625 1.34116 1.28363 0.86966 0.78439 0.86313 0.78118 1.20302 1.21234 1.19946 1.27560 0.97430 1.01921 1.03315 1.84067 1.04911 1.39706 1.32670 1.28155 0.99788 1.03417 1.02615 1.66091 0.98032 1.26899 1.27423 1.20135 0.95532 0.98838 0.96794 1.20337 0.89796 1.00625 1.02411 0.92878 0.94590 0.91674 0.95889 0.93313 0.94115 0.95706 0.96629 0.89874 0.91937 0.93156 0.80039 0.91504 0.91945 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.68 37.16 0.36 -2.04 16 2 C 0.04 0.77 5.27 -3.82 -0.02 0.75 16 3 N -0.48 -10.52 3.74 -229.44 -0.86 -11.38 16 4 C 0.06 1.22 5.44 -3.82 -0.02 1.20 16 5 C -0.14 -2.90 8.53 37.16 0.32 -2.58 16 6 C 0.28 6.44 1.69 -70.02 -0.12 6.32 16 7 H 0.07 1.66 5.72 -51.93 -0.30 1.36 16 8 C -0.53 -13.05 5.13 -34.44 -0.18 -13.23 16 9 H 0.06 1.45 7.14 -52.49 -0.37 1.08 16 10 C 0.09 2.33 3.93 -17.82 -0.07 2.26 16 11 N -0.84 -21.88 12.79 55.43 0.71 -21.17 16 12 Si 0.87 19.93 29.50 -169.99 -5.02 14.92 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 C -0.18 -3.73 3.96 -35.92 -0.14 -3.87 16 17 S 0.13 2.44 19.49 -107.50 -2.10 0.34 16 18 C -0.04 -0.73 12.23 51.58 0.63 -0.10 16 19 N -0.47 -9.12 10.53 -11.89 -0.13 -9.25 16 20 C 0.02 0.36 6.03 -84.22 -0.51 -0.15 16 21 C -0.07 -1.26 9.47 36.01 0.34 -0.92 16 22 H 0.05 1.01 5.98 -51.93 -0.31 0.70 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.02 0.45 5.32 -51.93 -0.28 0.17 16 26 H 0.05 0.89 7.49 -51.93 -0.39 0.50 16 27 H 0.04 0.79 7.52 -51.93 -0.39 0.39 16 28 H 0.03 0.51 3.85 -30.70 -0.12 0.39 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 1.89 5.36 -51.93 -0.28 1.61 16 31 H 0.06 1.46 7.69 -51.93 -0.40 1.06 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.37 4.29 -51.93 -0.22 1.15 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -26.58 286.16 -7.21 -33.79 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.73 Total: 0.80 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 0.59 Total: -12.36 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.27 Total: -41.80 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.10 Total: 0.34 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.58 -7.21 -33.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259673589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.925 kcal (2) G-P(sol) polarization free energy of solvation -26.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds