Wall clock time and date at job start Mon Mar 30 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47096 * 2 1 4 4 C 1.46898 * 111.00008 * 72.22881 * 3 2 1 5 5 C 1.53001 * 109.47445 * 202.66969 * 4 3 2 6 6 C 1.46901 * 111.00059 * 196.17959 * 3 2 1 7 7 H 1.08998 * 109.47352 * 286.78700 * 6 3 2 8 8 C 1.50703 * 109.47180 * 166.78478 * 6 3 2 9 9 H 1.07995 * 120.00252 * 125.28726 * 8 6 3 10 10 C 1.37878 * 119.99820 * 305.28690 * 8 6 3 11 11 N 1.31520 * 120.00182 * 12.13384 * 10 8 6 12 12 Si 1.86805 * 119.99957 * 192.13493 * 10 8 6 13 13 H 1.48497 * 109.47050 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47078 * 119.99898 * 12 10 8 15 15 H 1.48496 * 109.47217 * 240.00058 * 12 10 8 16 16 C 1.50696 * 109.46897 * 46.78867 * 6 3 2 17 17 S 1.76198 * 126.04230 * 45.68304 * 16 6 3 18 18 C 1.70975 * 90.28481 * 180.02562 * 17 16 6 19 19 N 1.29024 * 110.16631 * 359.73175 * 18 17 16 20 20 C 1.31780 * 117.12418 * 0.49633 * 19 18 17 21 21 C 1.50703 * 122.74955 * 179.75059 * 20 19 18 22 22 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47113 * 300.00127 * 1 2 3 24 24 H 1.09003 * 109.46984 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.47348 * 240.00342 * 2 1 3 26 26 H 1.08998 * 109.47383 * 120.00039 * 2 1 3 27 27 H 1.09000 * 109.47418 * 322.66988 * 4 3 2 28 28 H 1.09001 * 109.47194 * 82.66860 * 4 3 2 29 29 H 1.09004 * 109.47196 * 170.85073 * 5 4 3 30 30 H 1.09001 * 109.46736 * 290.84545 * 5 4 3 31 31 H 1.08998 * 109.47097 * 50.84450 * 5 4 3 32 32 H 0.96997 * 119.99464 * 180.02562 * 11 10 8 33 33 H 1.08007 * 124.91412 * 180.02562 * 18 17 16 34 34 H 1.09006 * 109.46674 * 269.71153 * 21 20 19 35 35 H 1.08999 * 109.46950 * 29.70971 * 21 20 19 36 36 H 1.08996 * 109.47280 * 149.71204 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8005 2.0208 1.3060 5 6 1.7767 3.5411 1.1355 6 6 3.4369 1.4423 -0.3821 7 1 4.0499 1.0698 0.4386 8 6 3.8179 2.8682 -0.6867 9 1 4.6519 3.3254 -0.1751 10 6 3.1016 3.5892 -1.6184 11 7 1.9534 3.1288 -2.0651 12 14 3.7619 5.2198 -2.2465 13 1 5.0628 5.5119 -1.5926 14 1 3.9539 5.1427 -3.7171 15 1 2.7943 6.3008 -1.9296 16 6 3.6624 0.5902 -1.6045 17 16 2.6584 0.5679 -3.0522 18 6 3.6784 -0.6126 -3.7517 19 7 4.6407 -0.9044 -2.9433 20 6 4.6590 -0.2824 -1.7816 21 6 5.7203 -0.5302 -0.7408 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.8482 1.6865 1.7177 28 1 2.6071 1.7439 1.9849 29 1 1.4546 4.0062 2.0673 30 1 2.7760 3.8937 0.8800 31 1 1.0828 3.8065 0.3380 32 1 1.4497 3.6359 -2.7209 33 1 3.5402 -1.0473 -4.7307 34 1 5.3985 -1.3333 -0.0778 35 1 6.6509 -0.8150 -1.2316 36 1 5.8790 0.3786 -0.1603 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259673591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:25 Heat of formation + Delta-G solvation = 54.581849 kcal Electronic energy + Delta-G solvation = -18080.179241 eV Core-core repulsion = 15498.706987 eV Total energy + Delta-G solvation = -2581.472254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.83926 -37.04515 -33.01175 -31.41280 -30.63155 -29.17354 -26.66503 -25.71632 -23.67629 -22.01432 -21.87503 -19.58365 -17.89203 -16.90864 -16.24095 -15.13564 -14.73816 -14.43977 -13.87116 -13.49565 -13.38282 -12.58503 -12.48315 -12.40929 -11.82553 -11.74358 -11.54953 -11.46310 -11.24773 -11.06632 -10.85735 -10.73705 -10.47890 -10.16326 -10.03156 -9.73229 -9.67848 -9.54914 -8.76674 -8.24646 -7.67825 -7.49419 -6.87442 -6.03523 -4.17218 1.98069 2.74363 3.18020 3.26292 3.31902 3.34549 3.86460 4.31522 4.99326 5.22215 5.33016 5.81650 5.98341 6.04820 6.09762 6.13033 6.23301 6.26002 6.31200 6.46165 6.49523 6.57917 6.66248 6.73169 6.80728 6.84952 6.92728 7.03167 7.29334 7.31780 7.67571 7.70620 7.91982 8.34956 8.57106 8.84108 8.87021 9.39199 10.86350 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.012791 C = 0.009781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.987837 B = 2188.487209 C = 2862.135357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.041 3.959 3 N -0.487 5.487 4 C 0.078 3.922 5 C -0.138 4.138 6 C 0.275 3.725 7 H 0.014 0.986 8 C -0.507 4.507 9 H 0.063 0.937 10 C 0.084 3.916 11 N -0.806 5.806 12 Si 0.874 3.126 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.136 4.136 17 S 0.234 5.766 18 C -0.104 4.104 19 N -0.477 5.477 20 C -0.015 4.015 21 C -0.061 4.061 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.006 0.994 27 H 0.045 0.955 28 H 0.008 0.992 29 H 0.014 0.986 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.261 0.739 33 H 0.170 0.830 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -3.344 1.739 4.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 N -0.212 5.212 4 C -0.050 4.050 5 C -0.195 4.195 6 C 0.167 3.833 7 H 0.032 0.968 8 C -0.546 4.546 9 H 0.081 0.919 10 C -0.124 4.124 11 N -0.439 5.439 12 Si 0.701 3.299 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.260 4.260 17 S 0.488 5.512 18 C -0.400 4.400 19 N -0.192 5.192 20 C -0.147 4.147 21 C -0.120 4.120 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.033 0.967 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.187 0.813 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.600 -2.950 0.679 3.991 hybrid contribution 1.496 0.285 0.556 1.622 sum -1.104 -2.665 1.235 3.138 Atomic orbital electron populations 1.21706 0.96241 0.99379 1.02127 1.22160 0.95322 0.92245 0.99119 1.62420 1.19715 1.12438 1.26650 1.21699 0.97284 0.96455 0.89559 1.21901 1.04963 0.94481 0.98166 1.17828 0.85328 0.93285 0.86860 0.96829 1.20901 1.15089 0.95177 1.23436 0.91902 1.24867 0.94036 0.97338 0.96174 1.69889 1.10294 1.36760 1.26974 0.86823 0.79500 0.84402 0.79203 1.19722 1.20761 1.20759 1.26356 0.98084 0.98876 1.02680 1.84746 1.26940 1.31413 1.08116 1.28455 1.01538 1.05147 1.04843 1.66070 1.24020 1.26338 1.02803 1.19875 1.00201 1.00002 0.94598 1.20093 0.95436 1.01278 0.95239 0.94247 0.93638 0.91700 0.91540 0.97635 0.93699 0.97346 0.96718 0.89994 0.91753 0.92851 0.81298 0.92760 0.92242 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.98 37.16 0.37 -2.00 16 2 C 0.04 0.80 5.30 -3.82 -0.02 0.78 16 3 N -0.49 -10.49 2.94 -229.44 -0.67 -11.17 16 4 C 0.08 1.57 5.53 -3.82 -0.02 1.55 16 5 C -0.14 -2.81 8.71 37.16 0.32 -2.49 16 6 C 0.28 6.29 1.87 -70.02 -0.13 6.16 16 7 H 0.01 0.32 6.46 -51.93 -0.34 -0.01 16 8 C -0.51 -12.33 5.76 -34.44 -0.20 -12.53 16 9 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 10 C 0.08 2.02 3.89 -17.82 -0.07 1.95 16 11 N -0.81 -19.41 9.24 55.43 0.51 -18.90 16 12 Si 0.87 19.48 29.55 -169.99 -5.02 14.46 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C -0.14 -3.08 3.43 -35.92 -0.12 -3.20 16 17 S 0.23 4.97 19.26 -107.50 -2.07 2.90 16 18 C -0.10 -2.10 12.23 51.58 0.63 -1.47 16 19 N -0.48 -10.48 10.53 -11.89 -0.13 -10.61 16 20 C -0.02 -0.33 6.74 -84.22 -0.57 -0.90 16 21 C -0.06 -1.14 9.81 36.01 0.35 -0.78 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.75 6.56 -51.93 -0.34 0.41 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.39 5.18 -51.93 -0.27 1.12 16 26 H 0.01 0.11 8.05 -51.93 -0.42 -0.31 16 27 H 0.04 0.83 6.24 -51.93 -0.32 0.51 16 28 H 0.01 0.17 7.76 -51.93 -0.40 -0.23 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 1.81 5.38 -51.93 -0.28 1.53 16 31 H 0.06 1.43 7.61 -51.93 -0.40 1.04 16 32 H 0.26 6.17 8.31 -40.82 -0.34 5.83 16 33 H 0.17 2.83 8.06 -52.48 -0.42 2.40 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.28 7.02 -51.93 -0.36 0.92 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -25.61 291.27 -7.66 -33.27 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.21 Total: -1.41 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 0.55 Total: -12.93 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.29 Total: -40.68 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.07 Total: 2.90 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.61 -7.66 -33.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259673591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.849 kcal (2) G-P(sol) polarization free energy of solvation -25.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds