Wall clock time and date at job start Mon Mar 30 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47096 * 2 1 4 4 C 1.46898 * 111.00008 * 72.22881 * 3 2 1 5 5 C 1.53001 * 109.47445 * 202.66969 * 4 3 2 6 6 C 1.46901 * 111.00059 * 196.17959 * 3 2 1 7 7 H 1.08998 * 109.47352 * 286.78700 * 6 3 2 8 8 C 1.50703 * 109.47180 * 166.78478 * 6 3 2 9 9 H 1.07995 * 120.00252 * 125.28726 * 8 6 3 10 10 C 1.37878 * 119.99820 * 305.28690 * 8 6 3 11 11 N 1.31520 * 120.00182 * 12.13384 * 10 8 6 12 12 Si 1.86805 * 119.99957 * 192.13493 * 10 8 6 13 13 H 1.48497 * 109.47050 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47078 * 119.99898 * 12 10 8 15 15 H 1.48496 * 109.47217 * 240.00058 * 12 10 8 16 16 C 1.50696 * 109.46897 * 46.78867 * 6 3 2 17 17 S 1.76198 * 126.04230 * 45.68304 * 16 6 3 18 18 C 1.70975 * 90.28481 * 180.02562 * 17 16 6 19 19 N 1.29024 * 110.16631 * 359.73175 * 18 17 16 20 20 C 1.31780 * 117.12418 * 0.49633 * 19 18 17 21 21 C 1.50703 * 122.74955 * 179.75059 * 20 19 18 22 22 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47113 * 300.00127 * 1 2 3 24 24 H 1.09003 * 109.46984 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.47348 * 240.00342 * 2 1 3 26 26 H 1.08998 * 109.47383 * 120.00039 * 2 1 3 27 27 H 1.09000 * 109.47418 * 322.66988 * 4 3 2 28 28 H 1.09001 * 109.47194 * 82.66860 * 4 3 2 29 29 H 1.09004 * 109.47196 * 170.85073 * 5 4 3 30 30 H 1.09001 * 109.46736 * 290.84545 * 5 4 3 31 31 H 1.08998 * 109.47097 * 50.84450 * 5 4 3 32 32 H 0.96997 * 119.99464 * 180.02562 * 11 10 8 33 33 H 1.08007 * 124.91412 * 180.02562 * 18 17 16 34 34 H 1.09006 * 109.46674 * 269.71153 * 21 20 19 35 35 H 1.08999 * 109.46950 * 29.70971 * 21 20 19 36 36 H 1.08996 * 109.47280 * 149.71204 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8005 2.0208 1.3060 5 6 1.7767 3.5411 1.1355 6 6 3.4369 1.4423 -0.3821 7 1 4.0499 1.0698 0.4386 8 6 3.8179 2.8682 -0.6867 9 1 4.6519 3.3254 -0.1751 10 6 3.1016 3.5892 -1.6184 11 7 1.9534 3.1288 -2.0651 12 14 3.7619 5.2198 -2.2465 13 1 5.0628 5.5119 -1.5926 14 1 3.9539 5.1427 -3.7171 15 1 2.7943 6.3008 -1.9296 16 6 3.6624 0.5902 -1.6045 17 16 2.6584 0.5679 -3.0522 18 6 3.6784 -0.6126 -3.7517 19 7 4.6407 -0.9044 -2.9433 20 6 4.6590 -0.2824 -1.7816 21 6 5.7203 -0.5302 -0.7408 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.8482 1.6865 1.7177 28 1 2.6071 1.7439 1.9849 29 1 1.4546 4.0062 2.0673 30 1 2.7760 3.8937 0.8800 31 1 1.0828 3.8065 0.3380 32 1 1.4497 3.6359 -2.7209 33 1 3.5402 -1.0473 -4.7307 34 1 5.3985 -1.3333 -0.0778 35 1 6.6509 -0.8150 -1.2316 36 1 5.8790 0.3786 -0.1603 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259673591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:25 Heat of formation + Delta-G solvation = 41.021877 kcal Electronic energy + Delta-G solvation = -18080.767245 eV Core-core repulsion = 15498.706987 eV Total energy + Delta-G solvation = -2582.060259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49825 -38.69546 -34.75950 -33.06587 -32.21773 -30.78485 -28.28891 -27.42527 -25.31778 -23.59409 -23.57835 -21.20567 -19.57110 -18.58714 -18.00524 -16.82746 -16.44795 -16.08894 -15.51916 -15.11698 -14.95828 -14.24654 -14.14108 -14.03469 -13.39604 -13.26580 -13.08539 -13.06902 -12.89624 -12.72247 -12.51019 -12.46690 -12.10830 -11.86984 -11.64456 -11.41751 -11.33332 -11.29282 -10.53447 -9.95786 -9.38913 -9.15283 -8.54351 -7.84999 -6.03338 0.32243 1.08920 1.40193 1.48968 1.53625 1.59139 2.20045 2.48933 3.22820 3.58309 3.74359 4.30676 4.43422 4.52944 4.57821 4.58524 4.69691 4.78363 4.81185 4.87418 4.97553 5.03746 5.05858 5.16325 5.23420 5.30031 5.31316 5.54610 5.60564 5.69215 5.80488 6.01717 6.15028 6.58042 6.93208 7.07569 7.19733 7.54129 9.01826 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.012791 C = 0.009781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.987837 B = 2188.487209 C = 2862.135357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.041 3.959 3 N -0.498 5.498 4 C 0.077 3.923 5 C -0.127 4.127 6 C 0.280 3.720 7 H 0.004 0.996 8 C -0.522 4.522 9 H 0.047 0.953 10 C 0.066 3.934 11 N -0.813 5.813 12 Si 0.910 3.090 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.280 1.280 16 C -0.159 4.159 17 S 0.226 5.774 18 C -0.089 4.089 19 N -0.496 5.496 20 C -0.025 4.025 21 C -0.058 4.058 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.010 0.990 27 H 0.062 0.938 28 H 0.008 0.992 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.259 0.741 33 H 0.205 0.795 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -4.117 1.705 4.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 N -0.222 5.222 4 C -0.051 4.051 5 C -0.185 4.185 6 C 0.171 3.829 7 H 0.021 0.979 8 C -0.561 4.561 9 H 0.065 0.935 10 C -0.141 4.141 11 N -0.447 5.447 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.206 1.206 16 C -0.282 4.282 17 S 0.481 5.519 18 C -0.385 4.385 19 N -0.211 5.211 20 C -0.156 4.156 21 C -0.118 4.118 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.028 0.972 27 H 0.081 0.919 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.222 0.778 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.066 -3.717 0.661 4.863 hybrid contribution 1.643 0.452 0.547 1.790 sum -1.423 -3.265 1.208 3.761 Atomic orbital electron populations 1.21615 0.94321 1.00865 1.01656 1.22175 0.96799 0.91135 0.98635 1.62334 1.18817 1.13652 1.27438 1.21744 0.98128 0.96098 0.89116 1.21742 1.03115 0.95011 0.98599 1.17680 0.85935 0.92465 0.86802 0.97886 1.20901 1.14934 0.96307 1.23961 0.93451 1.25104 0.94184 0.98546 0.96263 1.69951 1.10433 1.37176 1.27097 0.86268 0.78776 0.82923 0.78236 1.20423 1.21335 1.20560 1.26342 0.98927 0.99877 1.03078 1.84661 1.27260 1.31946 1.08066 1.29002 0.99973 1.03916 1.05602 1.66161 1.24778 1.27031 1.03158 1.20369 1.00496 0.99540 0.95194 1.20126 0.95160 1.01649 0.94818 0.91809 0.92925 0.93233 0.92849 0.97194 0.91929 0.97361 0.94197 0.92035 0.93837 0.93055 0.77812 0.91213 0.91149 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.98 71.98 0.72 -3.42 16 2 C 0.04 1.58 5.30 86.30 0.46 2.03 16 3 N -0.50 -21.08 2.94 -879.80 -2.59 -23.67 16 4 C 0.08 3.02 5.53 86.30 0.48 3.49 16 5 C -0.13 -5.10 8.71 71.98 0.63 -4.48 16 6 C 0.28 12.77 1.87 43.42 0.08 12.85 16 7 H 0.00 0.17 6.46 -2.39 -0.02 0.15 16 8 C -0.52 -25.61 5.76 25.60 0.15 -25.47 16 9 H 0.05 2.40 7.84 -2.91 -0.02 2.38 16 10 C 0.07 3.20 3.89 84.65 0.33 3.53 16 11 N -0.81 -39.00 9.24 21.45 0.20 -38.80 16 12 Si 0.91 40.02 29.55 68.60 2.03 42.04 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 16 C -0.16 -7.09 3.43 24.64 0.08 -7.01 16 17 S 0.23 9.39 19.26 -56.49 -1.09 8.30 16 18 C -0.09 -3.39 12.23 130.66 1.60 -1.79 16 19 N -0.50 -20.92 10.53 -191.55 -2.02 -22.94 16 20 C -0.02 -1.05 6.74 41.52 0.28 -0.77 16 21 C -0.06 -2.11 9.81 71.24 0.70 -1.41 16 22 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.05 1.62 6.56 -2.39 -0.02 1.61 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 2.17 5.18 -2.38 -0.01 2.16 16 26 H 0.01 0.37 8.05 -2.39 -0.02 0.35 16 27 H 0.06 2.20 6.24 -2.39 -0.01 2.19 16 28 H 0.01 0.32 7.76 -2.39 -0.02 0.30 16 29 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.06 2.72 5.38 -2.39 -0.01 2.71 16 31 H 0.04 1.91 7.61 -2.39 -0.02 1.89 16 32 H 0.26 12.19 8.31 -92.71 -0.77 11.42 16 33 H 0.21 6.15 8.06 -2.91 -0.02 6.12 16 34 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.39 7.02 -2.39 -0.02 2.37 16 Total: -1.00 -52.82 291.27 3.10 -49.73 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.06 Total: 7.78 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 5.50 Total: -22.43 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.41 Total: -85.42 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 9.39 SS G_CDS: -1.09 Total: 8.30 kcal Total: -52.82 3.10 -49.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259673591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.749 kcal (2) G-P(sol) polarization free energy of solvation -52.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds