Wall clock time and date at job start Mon Mar 30 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 5 5 C 1.52997 * 109.47254 * 66.04707 * 4 2 1 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 2 7 7 N 1.29031 * 124.91736 * 89.99650 * 6 5 4 8 8 C 1.31780 * 117.12711 * 179.97438 * 7 6 5 9 9 C 1.50702 * 122.74877 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46965 * 304.97728 * 9 8 7 11 11 C 1.50698 * 109.46936 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99944 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99655 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99611 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00386 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47237 * 89.99857 * 15 13 11 17 17 H 1.48507 * 109.47173 * 209.99955 * 15 13 11 18 18 H 1.48494 * 109.47022 * 329.99934 * 15 13 11 19 19 C 1.33637 * 114.50002 * 0.02562 * 8 7 6 20 20 S 1.70980 * 124.91855 * 269.69899 * 6 5 4 21 21 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 22 22 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 23 23 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 24 24 H 1.08998 * 109.47200 * 183.95269 * 3 2 1 25 25 H 1.08998 * 109.47707 * 303.95146 * 3 2 1 26 26 H 1.09001 * 109.47500 * 63.95378 * 3 2 1 27 27 H 1.09002 * 109.47043 * 186.04778 * 4 2 1 28 28 H 1.09001 * 109.47354 * 306.04839 * 4 2 1 29 29 H 1.09002 * 109.47153 * 300.00004 * 5 4 2 30 30 H 1.08998 * 109.47533 * 59.99633 * 5 4 2 31 31 H 1.08995 * 109.47095 * 64.97471 * 9 8 7 32 32 H 1.08999 * 109.46804 * 184.98014 * 9 8 7 33 33 H 1.09008 * 109.46992 * 300.00141 * 10 9 8 34 34 H 1.08999 * 109.47338 * 59.99729 * 10 9 8 35 35 H 0.97010 * 119.99800 * 180.02562 * 14 13 11 36 36 H 1.07997 * 126.03814 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1720 -3.0285 2.1371 7 7 1.5344 -3.2509 3.2366 8 6 2.1549 -3.9597 4.1581 9 6 1.5291 -4.2949 5.4875 10 6 1.0818 -3.0061 6.1800 11 6 0.4566 -3.3412 7.5096 12 1 0.3850 -4.3705 7.8285 13 6 -0.0241 -2.3337 8.3188 14 7 -0.5702 -2.6262 9.4789 15 14 0.1003 -0.5533 7.7675 16 1 -1.1198 -0.1846 7.0055 17 1 0.2251 0.3260 8.9578 18 1 1.2945 -0.3857 6.9010 19 6 3.3845 -4.3570 3.8172 20 16 3.7161 -3.7607 2.1927 21 1 -0.3634 0.4512 0.9232 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0253 -0.0709 24 1 3.0828 1.3433 -0.0708 25 1 1.5899 1.9164 -0.8524 26 1 1.7044 1.8724 0.9233 27 1 3.0797 -0.6611 1.1757 28 1 1.5611 -0.3872 2.0628 29 1 0.5472 -2.3475 0.9323 30 1 2.0658 -2.6214 0.0452 31 1 0.6657 -4.9412 5.3299 32 1 2.2587 -4.8092 6.1131 33 1 1.9453 -2.3597 6.3375 34 1 0.3523 -2.4917 5.5543 35 1 -0.9087 -1.9174 10.0482 36 1 4.0546 -4.9441 4.4276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259762479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:33 Heat of formation + Delta-G solvation = 34.423025 kcal Electronic energy + Delta-G solvation = -16220.876984 eV Core-core repulsion = 13638.530578 eV Total energy + Delta-G solvation = -2582.346406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.70913 -37.78961 -34.11283 -32.70339 -31.12088 -28.90199 -27.78279 -25.91454 -25.42313 -22.59185 -21.25930 -20.51611 -19.46365 -17.29110 -16.63831 -15.92559 -15.62192 -15.23339 -14.55753 -14.31860 -13.99829 -13.85456 -13.26747 -12.92635 -12.69396 -12.52198 -12.50436 -12.03796 -11.88279 -11.75749 -11.54228 -11.30985 -11.02329 -10.96917 -10.03591 -10.02098 -9.71162 -9.30608 -9.20665 -9.14430 -8.62373 -8.51130 -8.34204 -6.02881 -4.00399 0.93399 1.57118 1.94727 3.11811 3.33032 3.39358 3.45463 3.68107 4.33651 4.47828 4.80658 4.94016 4.99164 5.16941 5.22838 5.32211 5.35964 5.44197 5.48280 5.53245 5.63769 5.68684 5.71511 5.79657 5.89587 6.27948 6.35795 6.52921 6.74561 6.76607 6.86234 7.33598 7.46537 7.80834 8.09290 8.54227 9.01547 9.60233 11.10522 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.006010 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.328388 B = 4657.942743 C = 5944.027005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.059 3.941 5 C -0.036 4.036 6 C 0.049 3.951 7 N -0.455 5.455 8 C 0.090 3.910 9 C -0.035 4.035 10 C -0.003 4.003 11 C -0.520 4.520 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.267 1.267 19 C -0.265 4.265 20 S 0.079 5.921 21 H 0.030 0.970 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.012 0.988 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 3.042 -20.354 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.271 5.271 3 C -0.125 4.125 4 C -0.071 4.071 5 C -0.078 4.078 6 C -0.231 4.231 7 N -0.170 5.170 8 C -0.041 4.041 9 C -0.075 4.075 10 C -0.041 4.041 11 C -0.558 4.558 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.706 3.294 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.192 1.192 19 C -0.403 4.403 20 S 0.333 5.667 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.964 3.029 -21.259 22.903 hybrid contribution -0.587 1.152 1.501 1.982 sum 7.377 4.181 -19.758 21.500 Atomic orbital electron populations 1.22490 0.87157 1.02722 1.00733 1.62000 1.08344 1.13916 1.42825 1.22381 1.00776 0.88628 1.00672 1.22119 1.00482 0.92352 0.92126 1.20178 1.02426 0.92713 0.92453 1.26901 0.94745 1.03168 0.98242 1.66111 1.35633 1.14918 1.00310 1.20883 0.91092 0.94791 0.97294 1.20302 0.99404 1.00698 0.87122 1.19480 0.96292 0.92569 0.95781 1.21140 1.38440 0.95500 1.00733 0.90885 1.24978 0.94632 0.98956 0.94702 1.69918 1.40663 1.32942 1.10789 0.86788 0.79138 0.85316 0.78135 1.20256 1.21427 1.19171 1.26820 1.02050 1.12259 0.99171 1.83678 1.19507 1.49257 1.14244 0.95165 0.91372 0.90844 0.91290 0.91249 0.95435 0.90436 0.93607 0.88786 0.89016 0.90675 0.90903 0.96961 0.96002 0.92764 0.80773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.32 60.07 0.56 0.73 16 2 N -0.55 -5.69 5.02 -251.26 -1.26 -6.95 16 3 C 0.02 0.21 9.57 60.06 0.57 0.78 16 4 C 0.06 0.68 4.94 -3.83 -0.02 0.66 16 5 C -0.04 -0.43 5.72 -27.89 -0.16 -0.59 16 6 C 0.05 0.73 6.64 -13.46 -0.09 0.64 16 7 N -0.46 -8.45 10.35 -8.06 -0.08 -8.53 16 8 C 0.09 1.67 6.08 -84.23 -0.51 1.16 16 9 C -0.04 -0.73 5.65 -27.88 -0.16 -0.89 16 10 C 0.00 -0.08 3.94 -27.88 -0.11 -0.19 16 11 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 15 Si 0.88 22.60 27.47 -169.99 -4.67 17.93 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 19 C -0.26 -4.07 11.07 29.12 0.32 -3.75 16 20 S 0.08 1.03 23.18 -107.50 -2.49 -1.46 16 21 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 22 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 23 H 0.07 0.68 6.47 -51.93 -0.34 0.35 16 24 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 25 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 26 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 28 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.09 1.12 6.55 -51.93 -0.34 0.78 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 33 H 0.01 0.31 7.20 -51.92 -0.37 -0.06 16 34 H 0.02 0.56 7.51 -51.93 -0.39 0.18 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -32.37 312.01 -8.71 -41.09 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.66 Total: -4.22 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.02 Total: -15.00 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.57 Total: -43.03 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.37 -8.71 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.509 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds