Wall clock time and date at job start Mon Mar 30 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 5 5 C 1.52997 * 109.47254 * 66.04707 * 4 2 1 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 2 7 7 N 1.29031 * 124.91736 * 89.99650 * 6 5 4 8 8 C 1.31780 * 117.12711 * 179.97438 * 7 6 5 9 9 C 1.50702 * 122.74877 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46965 * 304.97728 * 9 8 7 11 11 C 1.50698 * 109.46936 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99944 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99655 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99611 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00386 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47237 * 89.99857 * 15 13 11 17 17 H 1.48507 * 109.47173 * 209.99955 * 15 13 11 18 18 H 1.48494 * 109.47022 * 329.99934 * 15 13 11 19 19 C 1.33637 * 114.50002 * 0.02562 * 8 7 6 20 20 S 1.70980 * 124.91855 * 269.69899 * 6 5 4 21 21 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 22 22 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 23 23 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 24 24 H 1.08998 * 109.47200 * 183.95269 * 3 2 1 25 25 H 1.08998 * 109.47707 * 303.95146 * 3 2 1 26 26 H 1.09001 * 109.47500 * 63.95378 * 3 2 1 27 27 H 1.09002 * 109.47043 * 186.04778 * 4 2 1 28 28 H 1.09001 * 109.47354 * 306.04839 * 4 2 1 29 29 H 1.09002 * 109.47153 * 300.00004 * 5 4 2 30 30 H 1.08998 * 109.47533 * 59.99633 * 5 4 2 31 31 H 1.08995 * 109.47095 * 64.97471 * 9 8 7 32 32 H 1.08999 * 109.46804 * 184.98014 * 9 8 7 33 33 H 1.09008 * 109.46992 * 300.00141 * 10 9 8 34 34 H 1.08999 * 109.47338 * 59.99729 * 10 9 8 35 35 H 0.97010 * 119.99800 * 180.02562 * 14 13 11 36 36 H 1.07997 * 126.03814 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1720 -3.0285 2.1371 7 7 1.5344 -3.2509 3.2366 8 6 2.1549 -3.9597 4.1581 9 6 1.5291 -4.2949 5.4875 10 6 1.0818 -3.0061 6.1800 11 6 0.4566 -3.3412 7.5096 12 1 0.3850 -4.3705 7.8285 13 6 -0.0241 -2.3337 8.3188 14 7 -0.5702 -2.6262 9.4789 15 14 0.1003 -0.5533 7.7675 16 1 -1.1198 -0.1846 7.0055 17 1 0.2251 0.3260 8.9578 18 1 1.2945 -0.3857 6.9010 19 6 3.3845 -4.3570 3.8172 20 16 3.7161 -3.7607 2.1927 21 1 -0.3634 0.4512 0.9232 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0253 -0.0709 24 1 3.0828 1.3433 -0.0708 25 1 1.5899 1.9164 -0.8524 26 1 1.7044 1.8724 0.9233 27 1 3.0797 -0.6611 1.1757 28 1 1.5611 -0.3872 2.0628 29 1 0.5472 -2.3475 0.9323 30 1 2.0658 -2.6214 0.0452 31 1 0.6657 -4.9412 5.3299 32 1 2.2587 -4.8092 6.1131 33 1 1.9453 -2.3597 6.3375 34 1 0.3523 -2.4917 5.5543 35 1 -0.9087 -1.9174 10.0482 36 1 4.0546 -4.9441 4.4276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259762479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:32 Heat of formation + Delta-G solvation = 12.388019 kcal Electronic energy + Delta-G solvation = -16221.832493 eV Core-core repulsion = 13638.530578 eV Total energy + Delta-G solvation = -2583.301916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95032 -38.62933 -35.90415 -34.31072 -32.77246 -30.25362 -28.51433 -27.57032 -26.55973 -23.84802 -22.70041 -21.82695 -20.68034 -19.08179 -18.29727 -16.90641 -16.48107 -16.39814 -16.21041 -15.56562 -15.40022 -14.90924 -14.88415 -14.67748 -14.13840 -13.68015 -13.45716 -13.31304 -13.02318 -12.91272 -12.76764 -12.58972 -12.48316 -11.96797 -11.91515 -11.85957 -11.64695 -11.37362 -10.81562 -10.51231 -10.32776 -9.58020 -9.42759 -8.34111 -6.37089 -0.22393 0.47015 0.77102 1.28870 1.29176 1.42252 1.83482 2.30624 2.81501 3.01170 3.29206 3.93305 4.01487 4.09270 4.22501 4.28280 4.40213 4.46251 4.55194 4.60285 4.65311 4.69697 4.75851 4.81437 4.90859 4.99328 5.00529 5.07001 5.20936 5.37229 5.49576 5.62212 5.92790 6.00143 6.23157 6.69598 6.89667 7.27444 8.82520 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.006010 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.328388 B = 4657.942743 C = 5944.027005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.548 5.548 3 C 0.021 3.979 4 C 0.064 3.936 5 C -0.033 4.033 6 C 0.036 3.964 7 N -0.501 5.501 8 C 0.057 3.943 9 C -0.027 4.027 10 C 0.007 3.993 11 C -0.531 4.531 12 H 0.041 0.959 13 C 0.012 3.988 14 N -0.946 5.946 15 Si 0.945 3.055 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.259 1.259 19 C -0.265 4.265 20 S 0.166 5.834 21 H 0.015 0.985 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.018 0.982 27 H 0.086 0.914 28 H 0.017 0.983 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.009 0.991 34 H 0.011 0.989 35 H 0.267 0.733 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 4.026 -22.931 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.271 5.271 3 C -0.127 4.127 4 C -0.066 4.066 5 C -0.074 4.074 6 C -0.242 4.242 7 N -0.216 5.216 8 C -0.074 4.074 9 C -0.067 4.067 10 C -0.031 4.031 11 C -0.569 4.569 12 H 0.059 0.941 13 C -0.186 4.186 14 N -0.587 5.587 15 Si 0.769 3.231 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.183 1.183 19 C -0.403 4.403 20 S 0.421 5.579 21 H 0.034 0.966 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.036 0.964 27 H 0.104 0.896 28 H 0.035 0.965 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.722 4.009 -23.859 26.074 hybrid contribution -1.080 0.770 2.239 2.602 sum 8.642 4.778 -21.620 23.769 Atomic orbital electron populations 1.22542 0.86890 1.03052 1.00766 1.62056 1.08646 1.14690 1.41748 1.22471 1.01465 0.87831 1.00904 1.22035 1.00797 0.92346 0.91396 1.20271 1.02345 0.92523 0.92263 1.27354 0.95995 1.02978 0.97873 1.66050 1.37499 1.16450 1.01622 1.20488 0.92562 0.97511 0.96835 1.20019 0.99513 0.98290 0.88919 1.19298 0.95364 0.94662 0.93752 1.21474 1.38593 0.94230 1.02622 0.94064 1.25867 0.94263 1.03754 0.94691 1.70047 1.41879 1.34645 1.12121 0.85739 0.79549 0.79672 0.78144 1.19527 1.20187 1.18292 1.27152 1.01081 1.10986 1.01112 1.83352 1.16706 1.46744 1.11092 0.96615 0.89588 0.90707 0.90345 0.89669 0.96352 0.89567 0.96470 0.89280 0.86517 0.91852 0.90013 0.97295 0.97078 0.92361 0.78635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.32 127.69 1.19 1.47 16 2 N -0.55 -10.30 5.02 -948.84 -4.76 -15.06 16 3 C 0.02 0.33 9.57 127.69 1.22 1.55 16 4 C 0.06 1.39 4.94 86.30 0.43 1.81 16 5 C -0.03 -0.71 5.72 29.85 0.17 -0.54 16 6 C 0.04 1.01 6.64 88.52 0.59 1.60 16 7 N -0.50 -18.29 10.35 -179.40 -1.86 -20.15 16 8 C 0.06 2.07 6.08 41.52 0.25 2.32 16 9 C -0.03 -1.16 5.65 29.85 0.17 -0.99 16 10 C 0.01 0.36 3.94 29.85 0.12 0.48 16 11 C -0.53 -31.91 9.66 25.60 0.25 -31.66 16 12 H 0.04 2.66 7.99 -2.91 -0.02 2.63 16 13 C 0.01 0.70 5.47 84.65 0.46 1.16 16 14 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 15 Si 0.94 47.00 27.47 68.60 1.88 48.89 16 16 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 19 C -0.26 -7.52 11.07 66.78 0.74 -6.78 16 20 S 0.17 3.73 23.18 -56.49 -1.31 2.43 16 21 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 22 H 0.09 1.21 8.12 -2.38 -0.02 1.19 16 23 H 0.07 1.30 6.47 -2.39 -0.02 1.28 16 24 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 25 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 26 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.09 1.68 8.06 -2.39 -0.02 1.66 16 28 H 0.02 0.47 8.12 -2.39 -0.02 0.45 16 29 H 0.09 2.02 6.55 -2.39 -0.02 2.00 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.08 3.20 8.03 -2.39 -0.02 3.18 16 33 H 0.01 0.45 7.20 -2.38 -0.02 0.43 16 34 H 0.01 0.58 7.51 -2.39 -0.02 0.56 16 35 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 36 H 0.20 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -70.85 312.01 0.83 -70.02 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 0.99 Total: 3.76 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 5.59 Total: -29.57 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -6.32 Total: -95.52 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.88 Total: 48.89 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.31 Total: 2.43 kcal Total: -70.85 0.83 -70.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.405 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds