Wall clock time and date at job start Mon Mar 30 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00009 * 2 1 4 4 C 1.38212 * 119.99673 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00315 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00104 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47084 * 359.97438 * 6 5 4 8 8 F 1.39905 * 109.47157 * 240.00003 * 6 5 4 9 9 F 1.39900 * 109.47159 * 120.00304 * 6 5 4 10 10 C 1.38214 * 120.00252 * 0.25245 * 5 4 3 11 11 C 1.50698 * 120.00448 * 179.72437 * 10 5 4 12 12 H 1.08997 * 109.46868 * 359.97438 * 11 10 5 13 13 C 1.52999 * 109.47029 * 120.00207 * 11 10 5 14 14 C 1.50699 * 109.46986 * 240.00103 * 11 10 5 15 15 H 1.08002 * 120.00369 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99873 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00191 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 120.00098 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46773 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47117 * 119.99934 * 18 16 14 21 21 H 1.48496 * 109.47188 * 240.00272 * 18 16 14 22 22 C 1.38215 * 119.99857 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47048 * 89.99865 * 1 2 3 24 24 H 1.09002 * 109.47466 * 209.99961 * 1 2 3 25 25 H 1.08998 * 109.46815 * 329.99535 * 1 2 3 26 26 H 1.07994 * 119.99840 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.00148 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47375 * 299.99958 * 7 6 5 29 29 H 1.09002 * 109.47045 * 60.00033 * 7 6 5 30 30 H 1.09000 * 109.47140 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47121 * 299.99930 * 13 11 10 32 32 H 1.08999 * 109.47108 * 60.00229 * 13 11 10 33 33 H 1.09001 * 109.46813 * 180.02562 * 13 11 10 34 34 H 0.96998 * 120.00249 * 179.97438 * 17 16 14 35 35 H 1.08006 * 119.99707 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 6.2887 1.4424 -0.0032 8 9 6.2441 -0.6591 -1.1457 9 9 6.2459 -0.6602 1.1388 10 6 3.5806 -1.1970 -0.0074 11 6 4.3341 -2.5021 -0.0149 12 1 5.4057 -2.3029 -0.0151 13 6 3.9653 -3.3110 1.2304 14 6 3.9691 -3.2858 -1.2492 15 1 3.2625 -2.8793 -1.9577 16 6 4.5380 -4.5213 -1.4746 17 7 5.3987 -5.0162 -0.6122 18 14 4.0850 -5.4932 -3.0044 19 1 3.1024 -4.7221 -3.8077 20 1 5.3049 -5.7362 -3.8156 21 1 3.4881 -6.7933 -2.6062 22 6 2.1980 -1.1970 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 -0.0010 28 1 5.9247 1.9563 -0.8929 29 1 5.9260 1.9562 0.8871 30 1 7.3787 1.4424 -0.0036 31 1 4.2293 -2.7441 2.1232 32 1 2.8937 -3.5102 1.2300 33 1 4.5106 -4.2548 1.2252 34 1 5.7986 -5.8856 -0.7706 35 1 1.6579 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259993235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:31 Heat of formation + Delta-G solvation = -89.989504 kcal Electronic energy + Delta-G solvation = -19531.726597 eV Core-core repulsion = 16357.852121 eV Total energy + Delta-G solvation = -3173.874476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.31626 -46.20740 -39.08315 -34.57368 -33.53580 -31.57726 -30.05161 -28.33805 -26.65065 -25.07808 -23.07889 -22.51935 -20.29696 -19.26630 -16.96943 -16.78459 -16.51942 -15.65772 -14.86868 -14.50046 -14.16345 -13.81054 -13.47748 -13.21655 -13.02125 -12.65742 -12.58172 -12.40361 -12.31971 -11.94349 -11.78024 -11.61860 -11.47245 -11.28325 -11.00518 -10.83642 -10.69145 -10.35969 -10.22315 -9.85878 -9.39824 -8.92382 -8.29909 -8.26460 -7.90328 -5.94918 -4.01159 1.69726 2.01280 3.32155 3.39893 3.44109 4.19331 4.26805 4.48438 4.62122 4.92770 5.09989 5.20094 5.33957 5.36771 5.46451 5.68829 5.70582 5.81649 5.90334 5.98076 6.05409 6.13373 6.24151 6.46826 6.60908 6.83288 6.88530 6.98415 7.14531 7.18961 7.29162 7.57380 7.76683 8.00262 8.13826 8.42535 9.00079 9.62126 11.11134 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.009545 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.316754 B = 2932.722362 C = 3848.987758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.093 4.093 5 C -0.181 4.181 6 C 0.342 3.658 7 C -0.192 4.192 8 F -0.185 7.185 9 F -0.195 7.195 10 C 0.012 3.988 11 C 0.058 3.942 12 H 0.051 0.949 13 C -0.130 4.130 14 C -0.502 4.502 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.115 4.115 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.009 0.991 32 H 0.026 0.974 33 H 0.087 0.913 34 H 0.260 0.740 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 12.341 2.237 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.076 4.076 3 C -0.172 4.172 4 C -0.111 4.111 5 C -0.182 4.182 6 C 0.306 3.694 7 C -0.250 4.250 8 F -0.166 7.166 9 F -0.176 7.176 10 C 0.012 3.988 11 C 0.039 3.961 12 H 0.068 0.932 13 C -0.187 4.187 14 C -0.541 4.541 15 H 0.074 0.926 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.133 4.133 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.790 12.144 2.264 12.922 hybrid contribution -0.102 -0.721 -0.884 1.145 sum -3.892 11.423 1.380 12.147 Atomic orbital electron populations 1.20767 0.91737 1.02275 1.02024 1.20012 0.95709 0.93490 0.98429 1.20711 0.93660 0.97097 1.05743 1.20893 0.94340 0.96529 0.99308 1.20140 0.93144 0.94859 1.10061 1.19213 0.89757 0.88010 0.72391 1.22814 1.03254 0.94048 1.04836 1.93083 1.89832 1.83031 1.50654 1.93019 1.89959 1.83241 1.51364 1.20622 0.94054 0.96052 0.88074 1.18158 0.95979 0.86789 0.95127 0.93156 1.21760 0.99402 1.02455 0.95128 1.21044 1.25608 1.01996 1.05411 0.92578 1.24930 0.94948 0.97515 0.96455 1.69901 1.29081 1.18319 1.35265 0.86543 0.78319 0.79881 0.83329 1.19792 1.21000 1.21058 1.20990 0.93883 0.97266 1.01164 0.91408 0.91592 0.92044 0.86631 0.86025 0.89412 0.89519 0.90273 0.97184 0.95442 0.89465 0.93044 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 36.01 0.36 -1.05 16 2 C -0.08 -1.26 5.88 -104.62 -0.62 -1.88 16 3 C -0.15 -2.35 9.70 -39.58 -0.38 -2.73 16 4 C -0.09 -1.48 8.98 -39.59 -0.36 -1.84 16 5 C -0.18 -3.59 5.35 -104.62 -0.56 -4.15 16 6 C 0.34 6.62 1.75 -27.88 -0.05 6.58 16 7 C -0.19 -2.57 8.04 37.16 0.30 -2.27 16 8 F -0.19 -4.19 15.54 2.25 0.04 -4.16 16 9 F -0.19 -4.16 15.60 2.25 0.04 -4.13 16 10 C 0.01 0.27 4.70 -104.62 -0.49 -0.22 16 11 C 0.06 1.50 1.86 -92.93 -0.17 1.33 16 12 H 0.05 1.43 4.72 -51.93 -0.25 1.19 16 13 C -0.13 -3.27 8.78 37.16 0.33 -2.95 16 14 C -0.50 -14.10 8.25 -34.44 -0.28 -14.38 16 15 H 0.06 1.58 7.61 -52.49 -0.40 1.18 16 16 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -25.92 11.32 55.43 0.63 -25.30 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.12 -2.31 8.38 -39.58 -0.33 -2.64 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 25 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.12 1.51 5.90 -52.48 -0.31 1.20 16 28 H 0.09 1.03 7.51 -51.93 -0.39 0.64 16 29 H 0.09 0.98 7.51 -51.93 -0.39 0.59 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.03 0.64 7.37 -51.93 -0.38 0.26 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.13 2.58 7.57 -52.48 -0.40 2.18 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -30.87 291.52 -6.78 -37.65 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.49 Total: -0.68 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -2.35 Total: -24.53 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.63 Total: -25.30 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.07 Total: -8.28 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.87 -6.78 -37.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.341 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds