Wall clock time and date at job start Mon Mar 30 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00009 * 2 1 4 4 C 1.38212 * 119.99673 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00315 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00104 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47084 * 359.97438 * 6 5 4 8 8 F 1.39905 * 109.47157 * 240.00003 * 6 5 4 9 9 F 1.39900 * 109.47159 * 120.00304 * 6 5 4 10 10 C 1.38214 * 120.00252 * 0.25245 * 5 4 3 11 11 C 1.50698 * 120.00448 * 179.72437 * 10 5 4 12 12 H 1.08997 * 109.46868 * 359.97438 * 11 10 5 13 13 C 1.52999 * 109.47029 * 120.00207 * 11 10 5 14 14 C 1.50699 * 109.46986 * 240.00103 * 11 10 5 15 15 H 1.08002 * 120.00369 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99873 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00191 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 120.00098 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46773 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47117 * 119.99934 * 18 16 14 21 21 H 1.48496 * 109.47188 * 240.00272 * 18 16 14 22 22 C 1.38215 * 119.99857 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47048 * 89.99865 * 1 2 3 24 24 H 1.09002 * 109.47466 * 209.99961 * 1 2 3 25 25 H 1.08998 * 109.46815 * 329.99535 * 1 2 3 26 26 H 1.07994 * 119.99840 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.00148 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47375 * 299.99958 * 7 6 5 29 29 H 1.09002 * 109.47045 * 60.00033 * 7 6 5 30 30 H 1.09000 * 109.47140 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47121 * 299.99930 * 13 11 10 32 32 H 1.08999 * 109.47108 * 60.00229 * 13 11 10 33 33 H 1.09001 * 109.46813 * 180.02562 * 13 11 10 34 34 H 0.96998 * 120.00249 * 179.97438 * 17 16 14 35 35 H 1.08006 * 119.99707 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 6.2887 1.4424 -0.0032 8 9 6.2441 -0.6591 -1.1457 9 9 6.2459 -0.6602 1.1388 10 6 3.5806 -1.1970 -0.0074 11 6 4.3341 -2.5021 -0.0149 12 1 5.4057 -2.3029 -0.0151 13 6 3.9653 -3.3110 1.2304 14 6 3.9691 -3.2858 -1.2492 15 1 3.2625 -2.8793 -1.9577 16 6 4.5380 -4.5213 -1.4746 17 7 5.3987 -5.0162 -0.6122 18 14 4.0850 -5.4932 -3.0044 19 1 3.1024 -4.7221 -3.8077 20 1 5.3049 -5.7362 -3.8156 21 1 3.4881 -6.7933 -2.6062 22 6 2.1980 -1.1970 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 -0.0010 28 1 5.9247 1.9563 -0.8929 29 1 5.9260 1.9562 0.8871 30 1 7.3787 1.4424 -0.0036 31 1 4.2293 -2.7441 2.1232 32 1 2.8937 -3.5102 1.2300 33 1 4.5106 -4.2548 1.2252 34 1 5.7986 -5.8856 -0.7706 35 1 1.6579 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:31 Heat of formation + Delta-G solvation = -106.566090 kcal Electronic energy + Delta-G solvation = -19532.445412 eV Core-core repulsion = 16357.852121 eV Total energy + Delta-G solvation = -3174.593291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.88022 -47.81436 -40.48766 -36.44367 -34.83226 -33.48493 -31.23309 -30.04362 -27.83501 -27.25264 -24.45225 -24.10915 -21.80619 -20.87153 -18.47944 -18.40173 -18.30311 -17.33663 -16.73336 -15.96008 -15.59004 -15.22641 -14.92405 -14.66997 -14.57657 -14.43793 -14.19489 -13.76214 -13.58775 -13.38515 -13.11041 -13.02250 -12.92892 -12.91667 -12.77646 -12.51911 -12.38892 -12.21279 -12.12204 -11.50647 -11.19036 -10.94610 -10.45564 -9.61605 -9.39444 -8.10961 -6.24627 0.32728 0.62469 1.36184 1.37361 1.49352 2.39971 2.82454 2.95159 3.16527 3.31625 3.62710 3.91655 4.09194 4.11770 4.17193 4.54960 4.61692 4.65485 4.79478 4.81246 4.81796 4.87775 4.94473 4.98602 5.02879 5.18574 5.29644 5.32333 5.46167 5.53017 5.60844 5.74906 6.00414 6.05512 6.18515 6.33207 6.83359 7.41784 8.94406 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.009545 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.316754 B = 2932.722362 C = 3848.987758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.202 4.202 6 C 0.321 3.679 7 C -0.180 4.180 8 F -0.215 7.215 9 F -0.216 7.216 10 C -0.029 4.029 11 C 0.060 3.940 12 H 0.017 0.983 13 C -0.118 4.118 14 C -0.514 4.514 15 H 0.047 0.953 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.955 3.045 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.275 1.275 22 C -0.139 4.139 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.017 0.983 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.261 0.739 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 15.439 1.756 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.073 4.073 3 C -0.160 4.160 4 C -0.099 4.099 5 C -0.203 4.203 6 C 0.285 3.715 7 C -0.237 4.237 8 F -0.196 7.196 9 F -0.198 7.198 10 C -0.029 4.029 11 C 0.041 3.959 12 H 0.035 0.965 13 C -0.176 4.176 14 C -0.553 4.553 15 H 0.065 0.935 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.157 4.157 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.181 0.819 27 H 0.184 0.816 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.482 15.249 1.786 16.302 hybrid contribution 0.377 -1.618 -0.699 1.803 sum -5.105 13.630 1.088 14.595 Atomic orbital electron populations 1.20845 0.88826 1.03785 1.03151 1.20436 0.97843 0.92598 0.96407 1.21297 0.93544 0.98283 1.02857 1.21384 0.95017 0.96583 0.96890 1.20375 0.93467 0.95466 1.10993 1.20069 0.90222 0.90486 0.70729 1.22833 1.04002 0.89670 1.07196 1.93010 1.90184 1.84139 1.52277 1.92963 1.90207 1.84171 1.52418 1.20401 0.95091 0.95366 0.92083 1.17922 0.94625 0.89043 0.94285 0.96458 1.21590 0.99134 1.01162 0.95719 1.21310 1.25229 1.02534 1.06183 0.93456 1.25750 0.94941 0.98602 0.99446 1.70040 1.30059 1.18680 1.36952 0.85547 0.78095 0.78596 0.79704 1.19174 1.20730 1.20103 1.20942 0.93137 0.98385 1.03248 0.90292 0.91787 0.88925 0.81885 0.81579 0.87146 0.86789 0.89282 0.96430 0.94923 0.92265 0.92994 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 10.01 71.24 0.71 -1.67 16 2 C -0.07 -2.21 5.88 -19.87 -0.12 -2.33 16 3 C -0.14 -3.64 9.70 22.27 0.22 -3.43 16 4 C -0.08 -2.28 8.98 22.27 0.20 -2.08 16 5 C -0.20 -7.87 5.35 -19.87 -0.11 -7.97 16 6 C 0.32 12.42 1.75 29.85 0.05 12.47 16 7 C -0.18 -4.30 8.04 71.98 0.58 -3.72 16 8 F -0.21 -10.13 15.54 44.97 0.70 -9.43 16 9 F -0.22 -9.59 15.60 44.97 0.70 -8.89 16 10 C -0.03 -1.35 4.70 -19.87 -0.09 -1.44 16 11 C 0.06 3.27 1.86 -12.29 -0.02 3.25 16 12 H 0.02 1.05 4.72 -2.39 -0.01 1.04 16 13 C -0.12 -6.31 8.78 71.98 0.63 -5.68 16 14 C -0.51 -30.19 8.25 25.60 0.21 -29.98 16 15 H 0.05 2.77 7.61 -2.91 -0.02 2.75 16 16 C 0.01 0.63 5.30 84.66 0.45 1.08 16 17 N -0.92 -56.05 11.32 21.45 0.24 -55.81 16 18 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 C -0.14 -5.63 8.38 22.27 0.19 -5.44 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16 25 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 26 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 27 H 0.17 3.11 5.90 -2.91 -0.02 3.10 16 28 H 0.11 2.12 7.51 -2.39 -0.02 2.11 16 29 H 0.11 2.08 7.51 -2.39 -0.02 2.07 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.03 1.62 7.37 -2.39 -0.02 1.61 16 33 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.11 4.60 7.57 -2.91 -0.02 4.58 16 Total: -1.00 -72.41 291.52 7.66 -64.75 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.09 Total: 8.43 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 2.90 Total: -46.95 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.24 Total: -55.81 kcal Atomic # 9 Polarization: -19.72 SS G_CDS: 1.40 Total: -18.32 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.41 7.66 -64.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.819 kcal (2) G-P(sol) polarization free energy of solvation -72.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds