Wall clock time and date at job start Mon Mar 30 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38211 * 120.00201 * 180.21341 * 3 2 1 5 5 C 1.38260 * 119.99987 * 359.84672 * 4 3 2 6 6 C 1.50700 * 120.00057 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47292 * 359.97438 * 6 5 4 8 8 F 1.39904 * 109.46458 * 119.98107 * 6 5 4 9 9 F 1.39891 * 109.47255 * 239.97838 * 6 5 4 10 10 C 1.38215 * 119.99681 * 359.96198 * 5 4 3 11 11 C 1.50702 * 119.99534 * 180.02562 * 10 5 4 12 12 H 1.08994 * 109.47252 * 359.96906 * 11 10 5 13 13 C 1.53001 * 109.46590 * 239.97229 * 11 10 5 14 14 C 1.50699 * 109.47255 * 119.97752 * 11 10 5 15 15 H 1.08001 * 119.99769 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99992 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00150 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 119.99816 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46766 * 120.00365 * 18 16 14 21 21 H 1.48497 * 109.46982 * 240.00293 * 18 16 14 22 22 C 1.38211 * 120.00162 * 179.80188 * 2 1 3 23 23 H 1.09001 * 109.47236 * 270.19071 * 1 2 3 24 24 H 1.09000 * 109.47285 * 30.19264 * 1 2 3 25 25 H 1.08993 * 109.47149 * 150.19759 * 1 2 3 26 26 H 1.08004 * 120.00351 * 0.03664 * 3 2 1 27 27 H 1.08002 * 120.00383 * 179.82605 * 4 3 2 28 28 H 1.09005 * 109.47184 * 59.99325 * 7 6 5 29 29 H 1.08996 * 109.47407 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47262 * 299.99532 * 7 6 5 31 31 H 1.09006 * 109.47240 * 179.97438 * 13 11 10 32 32 H 1.08994 * 109.47517 * 300.00069 * 13 11 10 33 33 H 1.09004 * 109.47424 * 60.00673 * 13 11 10 34 34 H 0.96995 * 119.99833 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.00200 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0045 5 6 4.2717 0.0000 -0.0057 6 6 5.7787 0.0001 -0.0112 7 6 6.2886 1.4425 -0.0151 8 9 6.2490 -0.6579 1.1304 9 9 6.2409 -0.6610 -1.1541 10 6 3.5806 -1.1969 -0.0017 11 6 4.3342 -2.5020 -0.0025 12 1 5.4057 -2.3028 -0.0070 13 6 3.9597 -3.3062 -1.2491 14 6 3.9748 -3.2903 1.2305 15 1 3.2714 -2.8865 1.9437 16 6 4.5440 -4.5271 1.4482 17 7 5.4009 -5.0186 0.5801 18 14 4.0990 -5.5040 2.9771 19 1 3.1207 -4.7357 3.7881 20 1 3.4989 -6.8023 2.5776 21 1 5.3233 -5.7508 3.7804 22 6 2.1980 -1.1969 0.0041 23 1 -0.3634 0.0034 1.0277 24 1 -0.3634 0.8882 -0.5168 25 1 -0.3633 -0.8917 -0.5107 26 1 1.6583 2.1327 0.0006 27 1 4.1204 2.1327 -0.0073 28 1 5.9284 1.9577 0.8754 29 1 7.3786 1.4425 -0.0186 30 1 5.9222 1.9550 -0.9046 31 1 4.5051 -4.2500 -1.2500 32 1 2.8881 -3.5054 -1.2447 33 1 4.2197 -2.7361 -2.1410 34 1 5.8016 -5.8885 0.7335 35 1 1.6581 -2.1323 0.0070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259993239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:34 Heat of formation + Delta-G solvation = -89.996929 kcal Electronic energy + Delta-G solvation = -19531.706397 eV Core-core repulsion = 16357.831599 eV Total energy + Delta-G solvation = -3173.874798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.31758 -46.20837 -39.08288 -34.57345 -33.53611 -31.57624 -30.05201 -28.33896 -26.65090 -25.07777 -23.07867 -22.51907 -20.29820 -19.26500 -16.96904 -16.78490 -16.52073 -15.65836 -14.86872 -14.50039 -14.16367 -13.80890 -13.47854 -13.21673 -13.02136 -12.65744 -12.58166 -12.40393 -12.31858 -11.94446 -11.77957 -11.61959 -11.47364 -11.28245 -11.00557 -10.83509 -10.69208 -10.35876 -10.22123 -9.86102 -9.39901 -8.92250 -8.29913 -8.26399 -7.90356 -5.94905 -4.01152 1.69706 2.01281 3.32184 3.39915 3.44161 4.19346 4.26829 4.48461 4.62131 4.92771 5.09975 5.20108 5.33952 5.36775 5.46434 5.68821 5.70580 5.81599 5.90331 5.98068 6.05418 6.13407 6.24171 6.46850 6.60916 6.83277 6.88527 6.98385 7.14591 7.19022 7.29130 7.57407 7.76704 8.00246 8.13855 8.42561 9.00103 9.62143 11.11146 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.009543 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.707029 B = 2933.383496 C = 3849.618036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.093 4.093 5 C -0.181 4.181 6 C 0.343 3.657 7 C -0.192 4.192 8 F -0.185 7.185 9 F -0.195 7.195 10 C 0.012 3.988 11 C 0.058 3.942 12 H 0.050 0.950 13 C -0.130 4.130 14 C -0.502 4.502 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.115 4.115 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.009 0.991 34 H 0.260 0.740 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 12.351 -2.193 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.172 4.172 4 C -0.111 4.111 5 C -0.182 4.182 6 C 0.306 3.694 7 C -0.250 4.250 8 F -0.166 7.166 9 F -0.176 7.176 10 C 0.012 3.988 11 C 0.039 3.961 12 H 0.068 0.932 13 C -0.187 4.187 14 C -0.541 4.541 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.133 4.133 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.799 12.155 -2.223 12.927 hybrid contribution -0.098 -0.724 0.880 1.144 sum -3.897 11.430 -1.343 12.151 Atomic orbital electron populations 1.20765 0.91739 1.02279 1.02020 1.20011 0.95709 0.93490 0.98442 1.20713 0.93660 0.97097 1.05734 1.20894 0.94339 0.96528 0.99319 1.20142 0.93145 0.94858 1.10052 1.19209 0.89757 0.88008 0.72390 1.22813 1.03255 0.94050 1.04837 1.93082 1.89677 1.83079 1.50770 1.93017 1.90115 1.83195 1.51249 1.20623 0.94053 0.96047 0.88096 1.18158 0.95966 0.86799 0.95127 0.93158 1.21761 0.99398 1.02450 0.95136 1.21046 1.25827 1.01857 1.05328 0.92572 1.24931 0.94958 0.97529 0.96439 1.69903 1.29187 1.18360 1.35120 0.86541 0.78297 0.79901 0.83324 1.19793 1.21066 1.20996 1.20986 0.93883 0.97267 1.01143 0.91415 0.92039 0.91593 0.86632 0.86025 0.89419 0.90273 0.89512 0.89461 0.95448 0.97189 0.93046 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 36.00 0.36 -1.05 16 2 C -0.08 -1.26 5.88 -104.63 -0.62 -1.88 16 3 C -0.15 -2.35 9.70 -39.58 -0.38 -2.73 16 4 C -0.09 -1.49 8.98 -39.58 -0.36 -1.84 16 5 C -0.18 -3.59 5.35 -104.62 -0.56 -4.15 16 6 C 0.34 6.63 1.75 -27.89 -0.05 6.58 16 7 C -0.19 -2.57 8.04 37.15 0.30 -2.27 16 8 F -0.19 -4.19 15.57 2.25 0.04 -4.16 16 9 F -0.19 -4.16 15.57 2.25 0.04 -4.13 16 10 C 0.01 0.27 4.70 -104.62 -0.49 -0.22 16 11 C 0.06 1.50 1.86 -92.92 -0.17 1.33 16 12 H 0.05 1.43 4.72 -51.93 -0.25 1.18 16 13 C -0.13 -3.27 8.78 37.16 0.33 -2.94 16 14 C -0.50 -14.10 8.24 -34.44 -0.28 -14.38 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -25.93 11.32 55.43 0.63 -25.30 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.11 -2.31 8.37 -39.58 -0.33 -2.64 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 25 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 26 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 27 H 0.12 1.51 5.90 -52.49 -0.31 1.20 16 28 H 0.09 1.02 7.51 -51.93 -0.39 0.63 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.98 7.52 -51.93 -0.39 0.59 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 32 H 0.03 0.64 7.39 -51.93 -0.38 0.26 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.13 2.58 7.58 -52.49 -0.40 2.18 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -30.87 291.52 -6.78 -37.65 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.50 Total: -0.68 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -2.35 Total: -24.53 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.63 Total: -25.30 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.07 Total: -8.28 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.87 -6.78 -37.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.348 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds