Wall clock time and date at job start Mon Mar 30 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38211 * 120.00201 * 180.21341 * 3 2 1 5 5 C 1.38260 * 119.99987 * 359.84672 * 4 3 2 6 6 C 1.50700 * 120.00057 * 179.97438 * 5 4 3 7 7 C 1.52992 * 109.47292 * 359.97438 * 6 5 4 8 8 F 1.39904 * 109.46458 * 119.98107 * 6 5 4 9 9 F 1.39891 * 109.47255 * 239.97838 * 6 5 4 10 10 C 1.38215 * 119.99681 * 359.96198 * 5 4 3 11 11 C 1.50702 * 119.99534 * 180.02562 * 10 5 4 12 12 H 1.08994 * 109.47252 * 359.96906 * 11 10 5 13 13 C 1.53001 * 109.46590 * 239.97229 * 11 10 5 14 14 C 1.50699 * 109.47255 * 119.97752 * 11 10 5 15 15 H 1.08001 * 119.99769 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99992 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00150 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 119.99816 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46766 * 120.00365 * 18 16 14 21 21 H 1.48497 * 109.46982 * 240.00293 * 18 16 14 22 22 C 1.38211 * 120.00162 * 179.80188 * 2 1 3 23 23 H 1.09001 * 109.47236 * 270.19071 * 1 2 3 24 24 H 1.09000 * 109.47285 * 30.19264 * 1 2 3 25 25 H 1.08993 * 109.47149 * 150.19759 * 1 2 3 26 26 H 1.08004 * 120.00351 * 0.03664 * 3 2 1 27 27 H 1.08002 * 120.00383 * 179.82605 * 4 3 2 28 28 H 1.09005 * 109.47184 * 59.99325 * 7 6 5 29 29 H 1.08996 * 109.47407 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47262 * 299.99532 * 7 6 5 31 31 H 1.09006 * 109.47240 * 179.97438 * 13 11 10 32 32 H 1.08994 * 109.47517 * 300.00069 * 13 11 10 33 33 H 1.09004 * 109.47424 * 60.00673 * 13 11 10 34 34 H 0.96995 * 119.99833 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.00200 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0045 5 6 4.2717 0.0000 -0.0057 6 6 5.7787 0.0001 -0.0112 7 6 6.2886 1.4425 -0.0151 8 9 6.2490 -0.6579 1.1304 9 9 6.2409 -0.6610 -1.1541 10 6 3.5806 -1.1969 -0.0017 11 6 4.3342 -2.5020 -0.0025 12 1 5.4057 -2.3028 -0.0070 13 6 3.9597 -3.3062 -1.2491 14 6 3.9748 -3.2903 1.2305 15 1 3.2714 -2.8865 1.9437 16 6 4.5440 -4.5271 1.4482 17 7 5.4009 -5.0186 0.5801 18 14 4.0990 -5.5040 2.9771 19 1 3.1207 -4.7357 3.7881 20 1 3.4989 -6.8023 2.5776 21 1 5.3233 -5.7508 3.7804 22 6 2.1980 -1.1969 0.0041 23 1 -0.3634 0.0034 1.0277 24 1 -0.3634 0.8882 -0.5168 25 1 -0.3633 -0.8917 -0.5107 26 1 1.6583 2.1327 0.0006 27 1 4.1204 2.1327 -0.0073 28 1 5.9284 1.9577 0.8754 29 1 7.3786 1.4425 -0.0186 30 1 5.9222 1.9550 -0.9046 31 1 4.5051 -4.2500 -1.2500 32 1 2.8881 -3.5054 -1.2447 33 1 4.2197 -2.7361 -2.1410 34 1 5.8016 -5.8885 0.7335 35 1 1.6581 -2.1323 0.0070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:34 Heat of formation + Delta-G solvation = -106.574820 kcal Electronic energy + Delta-G solvation = -19532.425268 eV Core-core repulsion = 16357.831599 eV Total energy + Delta-G solvation = -3174.593669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.88145 -47.81529 -40.48734 -36.44350 -34.83250 -33.48381 -31.23339 -30.04463 -27.83508 -27.25252 -24.45155 -24.10916 -21.80741 -20.87020 -18.47931 -18.40182 -18.30418 -17.33686 -16.73363 -15.96008 -15.59041 -15.22597 -14.92392 -14.67069 -14.57221 -14.44072 -14.19502 -13.76195 -13.58851 -13.38472 -13.11020 -13.02263 -12.92936 -12.91748 -12.77596 -12.51918 -12.38910 -12.21119 -12.12180 -11.50778 -11.19061 -10.94520 -10.45565 -9.61555 -9.39461 -8.10959 -6.24629 0.32712 0.62486 1.36216 1.37345 1.49383 2.39990 2.82467 2.95205 3.16507 3.31640 3.62730 3.91679 4.09223 4.11774 4.17190 4.54962 4.61682 4.65495 4.79486 4.81269 4.81803 4.87799 4.94451 4.98612 5.02905 5.18572 5.29648 5.32399 5.46183 5.53022 5.60870 5.74899 6.00420 6.05508 6.18521 6.33245 6.83368 7.41790 8.94401 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.009543 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.707029 B = 2933.383496 C = 3849.618036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.202 4.202 6 C 0.321 3.679 7 C -0.180 4.180 8 F -0.215 7.215 9 F -0.216 7.216 10 C -0.029 4.029 11 C 0.060 3.940 12 H 0.017 0.983 13 C -0.118 4.118 14 C -0.514 4.514 15 H 0.047 0.953 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.955 3.045 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.281 1.281 22 C -0.139 4.139 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 15.451 -1.705 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.073 4.073 3 C -0.160 4.160 4 C -0.099 4.099 5 C -0.203 4.203 6 C 0.285 3.715 7 C -0.237 4.237 8 F -0.196 7.196 9 F -0.198 7.198 10 C -0.030 4.030 11 C 0.041 3.959 12 H 0.035 0.965 13 C -0.176 4.176 14 C -0.553 4.553 15 H 0.066 0.934 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.207 1.207 22 C -0.157 4.157 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.181 0.819 27 H 0.184 0.816 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.487 15.260 -1.738 16.310 hybrid contribution 0.379 -1.622 0.693 1.804 sum -5.108 13.638 -1.045 14.601 Atomic orbital electron populations 1.20843 0.88826 1.03775 1.03162 1.20433 0.97842 0.92596 0.96416 1.21299 0.93545 0.98284 1.02848 1.21386 0.95015 0.96582 0.96897 1.20378 0.93468 0.95465 1.10986 1.20065 0.90221 0.90485 0.70729 1.22832 1.04003 0.89670 1.07198 1.93009 1.90033 1.84185 1.52387 1.92960 1.90360 1.84128 1.52308 1.20401 0.95087 0.95361 0.92103 1.17923 0.94615 0.89050 0.94286 0.96459 1.21591 0.99124 1.01156 0.95729 1.21312 1.25446 1.02403 1.06096 0.93448 1.25751 0.94942 0.98631 0.99422 1.70042 1.30161 1.18721 1.36808 0.85544 0.78085 0.78597 0.79708 1.19175 1.20113 1.20724 1.20939 0.93140 0.98385 1.03234 0.90282 0.88924 0.91798 0.81883 0.81578 0.87144 0.89282 0.86788 0.92262 0.94934 0.96430 0.92996 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 10.01 71.23 0.71 -1.67 16 2 C -0.07 -2.21 5.88 -19.87 -0.12 -2.33 16 3 C -0.14 -3.64 9.70 22.27 0.22 -3.43 16 4 C -0.08 -2.28 8.98 22.27 0.20 -2.08 16 5 C -0.20 -7.87 5.35 -19.86 -0.11 -7.97 16 6 C 0.32 12.42 1.75 29.85 0.05 12.47 16 7 C -0.18 -4.30 8.04 71.98 0.58 -3.72 16 8 F -0.22 -10.12 15.57 44.97 0.70 -9.42 16 9 F -0.22 -9.59 15.57 44.97 0.70 -8.89 16 10 C -0.03 -1.35 4.70 -19.86 -0.09 -1.45 16 11 C 0.06 3.27 1.86 -12.29 -0.02 3.25 16 12 H 0.02 1.05 4.72 -2.39 -0.01 1.04 16 13 C -0.12 -6.31 8.78 71.98 0.63 -5.68 16 14 C -0.51 -30.19 8.24 25.60 0.21 -29.98 16 15 H 0.05 2.78 7.60 -2.91 -0.02 2.75 16 16 C 0.01 0.63 5.30 84.65 0.45 1.08 16 17 N -0.92 -56.05 11.32 21.45 0.24 -55.81 16 18 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 22 C -0.14 -5.62 8.37 22.27 0.19 -5.44 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 25 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 26 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.17 3.11 5.90 -2.91 -0.02 3.09 16 28 H 0.11 2.12 7.51 -2.38 -0.02 2.10 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.11 2.08 7.52 -2.39 -0.02 2.07 16 31 H 0.06 3.45 6.07 -2.38 -0.01 3.44 16 32 H 0.03 1.62 7.39 -2.39 -0.02 1.60 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.11 4.60 7.58 -2.91 -0.02 4.58 16 Total: -1.00 -72.41 291.52 7.66 -64.76 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.09 Total: 8.41 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 2.90 Total: -46.95 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.24 Total: -55.81 kcal Atomic # 9 Polarization: -19.72 SS G_CDS: 1.40 Total: -18.32 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.41 7.66 -64.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.820 kcal (2) G-P(sol) polarization free energy of solvation -72.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds