Wall clock time and date at job start Mon Mar 30 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38254 * 120.00391 * 2 1 4 4 C 1.38209 * 120.00374 * 180.25689 * 3 2 1 5 5 C 1.38256 * 119.99876 * 359.48153 * 4 3 2 6 6 C 1.50704 * 120.00323 * 180.28442 * 5 4 3 7 7 C 1.53004 * 109.46894 * 355.57399 * 6 5 4 8 8 C 1.52997 * 109.47572 * 115.57760 * 6 5 4 9 9 C 1.50704 * 109.46732 * 235.57936 * 6 5 4 10 10 H 1.07998 * 120.00628 * 0.10288 * 9 6 5 11 11 C 1.37879 * 119.99862 * 180.10602 * 9 6 5 12 12 N 1.31524 * 119.99632 * 359.97438 * 11 9 6 13 13 Si 1.86792 * 120.00257 * 179.97438 * 11 9 6 14 14 H 1.48508 * 109.47069 * 60.00033 * 13 11 9 15 15 H 1.48496 * 109.47370 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47520 * 299.99979 * 13 11 9 17 17 C 1.38217 * 120.00162 * 0.25991 * 5 4 3 18 18 C 1.38210 * 119.99882 * 179.76237 * 2 1 3 19 19 C 1.50702 * 120.00064 * 0.02562 * 18 2 1 20 20 F 1.39902 * 109.47223 * 210.02301 * 19 18 2 21 21 F 1.39900 * 109.47303 * 330.02009 * 19 18 2 22 22 H 1.08993 * 109.47280 * 270.23813 * 1 2 3 23 23 H 1.08999 * 109.47207 * 30.24050 * 1 2 3 24 24 H 1.09007 * 109.47176 * 150.23335 * 1 2 3 25 25 H 1.08007 * 119.99681 * 0.02562 * 3 2 1 26 26 H 1.08001 * 120.00510 * 179.76311 * 4 3 2 27 27 H 1.08997 * 109.46760 * 60.00194 * 7 6 5 28 28 H 1.09002 * 109.46803 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.47187 * 300.00605 * 7 6 5 30 30 H 1.09001 * 109.46760 * 59.99581 * 8 6 5 31 31 H 1.08996 * 109.47182 * 180.02562 * 8 6 5 32 32 H 1.08998 * 109.46477 * 300.00077 * 8 6 5 33 33 H 0.96994 * 119.99570 * 180.02562 * 12 11 9 34 34 H 1.07994 * 120.00156 * 179.97438 * 17 5 4 35 35 H 1.09004 * 109.47159 * 90.02208 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2717 -0.0001 0.0001 6 6 5.7787 -0.0001 0.0007 7 6 6.2888 1.4376 -0.1166 8 6 6.2882 -0.6173 1.3047 9 6 6.2814 -0.8084 -1.1677 10 1 5.5799 -1.2739 -1.8441 11 6 7.6370 -0.9536 -1.3731 12 7 8.4914 -0.3863 -0.5496 13 14 8.2602 -1.9560 -2.8209 14 1 7.7678 -1.3560 -4.0870 15 1 9.7452 -1.9576 -2.8193 16 1 7.7632 -3.3508 -2.7079 17 6 3.5806 -1.1971 0.0055 18 6 2.1980 -1.1969 0.0050 19 6 1.4445 -2.5020 0.0098 20 9 2.2000 -3.4743 0.6739 21 9 0.2216 -2.3321 0.6677 22 1 -0.3633 0.0043 1.0276 23 1 -0.3633 0.8878 -0.5176 24 1 -0.3634 -0.8921 -0.5102 25 1 1.6583 2.1326 0.0004 26 1 4.1204 2.1325 -0.0092 27 1 5.9251 2.0222 0.7284 28 1 7.3788 1.4375 -0.1166 29 1 5.9257 1.8773 -1.0456 30 1 5.9247 -1.6415 1.3882 31 1 7.3782 -0.6169 1.3053 32 1 5.9245 -0.0326 2.1497 33 1 9.4450 -0.4882 -0.6944 34 1 4.1206 -2.1323 0.0094 35 1 1.2635 -2.8209 -1.0167 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:26 Heat of formation + Delta-G solvation = -87.716226 kcal Electronic energy + Delta-G solvation = -19158.185729 eV Core-core repulsion = 15984.409830 eV Total energy + Delta-G solvation = -3173.775899 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.82894 -46.83382 -39.18880 -35.71790 -32.32875 -31.34330 -30.28791 -27.00006 -25.92330 -25.17321 -24.70665 -21.54191 -21.27211 -18.95530 -17.33966 -16.94146 -16.57008 -15.69972 -15.32671 -14.62751 -14.60178 -13.74329 -13.64532 -13.44354 -13.24877 -12.96213 -12.72092 -12.60344 -11.97996 -11.72149 -11.47572 -11.40041 -11.22456 -11.02574 -10.89633 -10.69985 -10.46154 -10.32016 -10.17737 -9.63711 -9.38118 -8.91829 -8.42014 -8.38000 -7.75536 -6.01838 -4.12321 1.71930 1.97979 3.28470 3.33386 3.36284 4.00282 4.22806 4.40983 4.47634 4.88268 5.15407 5.23879 5.26717 5.33261 5.62251 5.82640 5.82767 6.08031 6.10789 6.20377 6.40183 6.58996 6.68792 6.81322 6.83696 6.95006 6.97412 7.07976 7.26046 7.35299 7.55318 7.60573 7.72249 8.02052 8.14241 8.38886 8.87116 9.52953 10.99173 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.006954 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.883111 B = 4025.740401 C = 4592.854909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.128 4.128 4 C -0.112 4.112 5 C -0.032 4.032 6 C 0.095 3.905 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.502 4.502 10 H 0.056 0.944 11 C 0.066 3.934 12 N -0.886 5.886 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.074 4.074 18 C -0.180 4.180 19 C 0.316 3.684 20 F -0.200 7.200 21 F -0.203 7.203 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.012 0.988 28 H 0.086 0.914 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.009 0.991 33 H 0.261 0.739 34 H 0.131 0.869 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 0.192 0.729 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.130 4.130 5 C -0.032 4.032 6 C 0.095 3.905 7 C -0.191 4.191 8 C -0.185 4.185 9 C -0.540 4.540 10 H 0.074 0.926 11 C -0.135 4.135 12 N -0.524 5.524 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.092 4.092 18 C -0.181 4.181 19 C 0.262 3.738 20 F -0.182 7.182 21 F -0.184 7.184 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.134 0.866 26 H 0.144 0.856 27 H 0.031 0.969 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.661 0.182 0.789 11.689 hybrid contribution 0.366 -0.568 -0.731 0.995 sum -11.296 -0.386 0.058 11.303 Atomic orbital electron populations 1.20995 0.91513 1.02242 1.02239 1.19400 0.95460 0.92287 1.01281 1.20891 0.94397 0.96579 1.02755 1.21421 0.93450 0.98997 0.99094 1.20649 0.98635 0.91298 0.92660 1.17268 0.84104 0.94209 0.94947 1.21903 1.04540 0.95979 0.96671 1.21813 1.04387 0.97488 0.94779 1.21020 0.91517 1.31404 1.10097 0.92585 1.24903 0.96827 0.95540 0.96245 1.69799 1.02098 1.43881 1.36631 0.86660 0.77628 0.80764 0.82991 1.20340 1.21258 1.20250 1.20864 0.91334 0.99777 0.97256 1.20154 0.95092 0.93032 1.09833 1.20258 0.75554 0.85773 0.92179 1.92988 1.76625 1.64865 1.83674 1.92936 1.45485 1.95778 1.84198 0.91374 0.92484 0.91176 0.86603 0.85591 0.96893 0.89495 0.95239 0.95282 0.89353 0.97181 0.92882 0.85154 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 8.41 36.00 0.30 -1.13 16 2 C -0.08 -1.35 5.85 -104.63 -0.61 -1.96 16 3 C -0.13 -2.09 9.70 -39.59 -0.38 -2.48 16 4 C -0.11 -2.10 8.99 -39.59 -0.36 -2.45 16 5 C -0.03 -0.69 4.72 -104.62 -0.49 -1.18 16 6 C 0.09 2.25 0.58 -156.81 -0.09 2.16 16 7 C -0.13 -3.07 6.92 37.16 0.26 -2.81 16 8 C -0.13 -3.01 8.10 37.16 0.30 -2.71 16 9 C -0.50 -13.06 7.58 -34.44 -0.26 -13.32 16 10 H 0.06 1.47 7.47 -52.49 -0.39 1.07 16 11 C 0.07 1.73 5.15 -17.81 -0.09 1.64 16 12 N -0.89 -23.68 9.35 55.43 0.52 -23.17 16 13 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.07 -1.48 7.96 -39.58 -0.32 -1.80 16 18 C -0.18 -3.11 5.74 -104.62 -0.60 -3.71 16 19 C 0.32 4.63 5.20 36.01 0.19 4.82 16 20 F -0.20 -3.31 16.48 2.25 0.04 -3.28 16 21 F -0.20 -2.90 13.77 2.25 0.03 -2.87 16 22 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 23 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 24 H 0.07 0.83 6.03 -51.92 -0.31 0.52 16 25 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 26 H 0.13 2.25 5.90 -52.49 -0.31 1.94 16 27 H 0.01 0.26 7.30 -51.93 -0.38 -0.12 16 28 H 0.09 2.19 6.08 -51.93 -0.32 1.88 16 29 H 0.03 0.65 7.72 -51.93 -0.40 0.25 16 30 H 0.03 0.66 7.66 -51.93 -0.40 0.27 16 31 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.13 2.71 7.28 -52.49 -0.38 2.33 16 35 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -26.90 285.65 -6.73 -33.63 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.45 Total: 0.69 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -2.16 Total: -24.92 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.52 Total: -23.17 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.07 Total: -6.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.90 -6.73 -33.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.084 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds