Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47401 * 2 1 4 4 C 1.50704 * 109.47229 * 239.99577 * 2 1 3 5 5 H 1.07995 * 119.99973 * 240.00171 * 4 2 1 6 6 C 1.37877 * 119.99309 * 60.00178 * 4 2 1 7 7 N 1.31511 * 120.00706 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99369 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46918 * 90.00385 * 8 6 4 10 10 H 1.48504 * 109.46657 * 209.99746 * 8 6 4 11 11 H 1.48487 * 109.47363 * 329.99741 * 8 6 4 12 12 C 1.50706 * 109.47221 * 119.99905 * 2 1 3 13 13 C 1.38264 * 119.98697 * 68.31575 * 12 2 1 14 14 C 1.38220 * 120.04928 * 179.97438 * 13 12 2 15 15 C 1.38214 * 120.02968 * 0.02562 * 14 13 12 16 16 C 1.38441 * 119.97129 * 359.70557 * 15 14 13 17 17 F 1.35101 * 120.02818 * 180.31770 * 16 15 14 18 18 C 1.38178 * 119.98724 * 248.29601 * 12 2 1 19 19 C 1.50706 * 120.01124 * 359.97438 * 18 12 2 20 20 C 1.52997 * 109.47231 * 274.67612 * 19 18 12 21 21 C 1.52996 * 109.46862 * 154.67393 * 19 18 12 22 22 F 1.39899 * 109.46959 * 34.67625 * 19 18 12 23 23 H 1.08997 * 109.47209 * 300.00058 * 1 2 3 24 24 H 1.08999 * 109.47274 * 60.00012 * 1 2 3 25 25 H 1.09007 * 109.47140 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00174 * 180.02562 * 7 6 4 27 27 H 1.07999 * 119.97351 * 0.02562 * 13 12 2 28 28 H 1.08005 * 119.98333 * 180.02562 * 14 13 12 29 29 H 1.08000 * 120.01888 * 180.02562 * 15 14 13 30 30 H 1.09000 * 109.47028 * 295.07502 * 20 19 18 31 31 H 1.08999 * 109.47217 * 175.07465 * 20 19 18 32 32 H 1.09004 * 109.47476 * 55.07005 * 20 19 18 33 33 H 1.09003 * 109.46897 * 193.94875 * 21 19 18 34 34 H 1.08998 * 109.46987 * 313.94293 * 21 19 18 35 35 H 1.08999 * 109.46932 * 73.94592 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3426 -2.1618 -4.4118 10 1 2.4865 -0.1415 -5.1122 11 1 3.6292 -1.7585 -3.7122 12 6 2.0323 -0.7104 1.2305 13 6 1.8455 -2.0736 1.3661 14 6 2.3062 -2.7266 2.4939 15 6 2.9538 -2.0172 3.4878 16 6 3.1464 -0.6532 3.3505 17 9 3.7849 0.0402 4.3184 18 6 2.6798 0.0008 2.2226 19 6 2.8842 1.4865 2.0740 20 6 4.1584 1.7480 1.2684 21 6 3.0163 2.1241 3.4585 22 9 1.7880 2.0436 1.4067 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7081 1.1607 -3.4844 27 1 1.3400 -2.6288 0.5898 28 1 2.1601 -3.7916 2.5985 29 1 3.3141 -2.5277 4.3687 30 1 5.0224 1.3916 1.8293 31 1 4.2597 2.8179 1.0860 32 1 4.1008 1.2209 0.3161 33 1 2.9154 3.2060 3.3714 34 1 2.2344 1.7379 4.1124 35 1 3.9929 1.8827 3.8780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = -68.518367 kcal Electronic energy + Delta-G solvation = -19784.998138 eV Core-core repulsion = 16612.054720 eV Total energy + Delta-G solvation = -3172.943418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.73204 -47.25306 -38.76152 -34.28957 -34.11868 -31.35529 -29.32871 -28.17342 -27.16318 -25.09357 -22.84811 -22.72852 -20.20769 -19.81359 -16.83543 -16.44144 -16.08238 -15.60585 -15.45540 -14.75498 -14.60468 -14.51871 -14.26642 -13.13231 -13.08221 -12.70200 -12.41035 -12.06605 -11.96347 -11.86743 -11.58875 -11.42316 -11.17466 -11.09101 -10.86515 -10.79019 -10.55066 -10.28826 -10.18103 -9.92567 -9.41343 -8.74470 -8.26170 -8.21499 -7.93752 -5.98083 -4.04627 1.63883 1.82796 3.29333 3.36712 3.39430 4.13767 4.43582 4.64273 4.76647 5.04137 5.06597 5.26502 5.31544 5.34181 5.59375 5.79914 5.81485 5.93299 5.98890 6.13161 6.26800 6.32000 6.48048 6.61128 6.64530 6.71100 6.90359 6.92265 7.12925 7.20023 7.29748 7.52780 7.74984 8.05990 8.14235 8.41409 8.97692 9.58514 11.07270 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.008384 C = 0.007264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.809642 B = 3338.838025 C = 3853.825699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.511 4.511 5 H 0.055 0.945 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.017 3.983 13 C -0.121 4.121 14 C -0.094 4.094 15 C -0.184 4.184 16 C 0.104 3.896 17 F -0.144 7.144 18 C -0.166 4.166 19 C 0.170 3.830 20 C -0.169 4.169 21 C -0.178 4.178 22 F -0.184 7.184 23 H 0.009 0.991 24 H 0.086 0.914 25 H 0.022 0.978 26 H 0.260 0.740 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -1.476 10.268 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.022 3.978 3 H 0.098 0.902 4 C -0.549 4.549 5 H 0.073 0.927 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.017 3.983 13 C -0.139 4.139 14 C -0.113 4.113 15 C -0.203 4.203 16 C 0.085 3.915 17 F -0.123 7.123 18 C -0.168 4.168 19 C 0.152 3.848 20 C -0.227 4.227 21 C -0.235 4.235 22 F -0.164 7.164 23 H 0.028 0.972 24 H 0.105 0.895 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.842 -1.303 10.146 10.928 hybrid contribution 0.330 -0.512 -0.725 0.947 sum 4.172 -1.816 9.422 10.463 Atomic orbital electron populations 1.21687 0.97314 0.98748 1.00477 1.18624 0.93324 0.98551 0.87266 0.90186 1.21146 1.31325 1.12385 0.90052 0.92656 1.24919 0.95141 0.94984 0.98739 1.69900 1.36473 1.22685 1.23273 0.86649 0.79250 0.79461 0.82983 1.20744 1.21250 1.19973 1.20587 0.89779 0.93467 0.94500 1.21240 1.00604 0.94674 0.97430 1.21002 0.97258 0.99474 0.93517 1.20820 1.05700 0.92209 1.01552 1.17357 0.97716 0.90045 0.86429 1.91389 1.79826 1.78966 1.62070 1.20142 1.05390 0.95854 0.95374 1.19360 0.84859 0.88482 0.92131 1.22395 0.95435 1.02866 1.01967 1.22795 1.04159 1.01030 0.95556 1.92823 1.56091 1.86250 1.81237 0.97174 0.89548 0.95854 0.92996 0.84985 0.85907 0.85745 0.91537 0.91488 0.89611 0.91906 0.91799 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 8.78 37.16 0.33 -2.73 16 2 C 0.04 0.99 1.59 -92.92 -0.15 0.84 16 3 H 0.08 2.11 4.17 -51.93 -0.22 1.89 16 4 C -0.51 -13.54 8.02 -34.44 -0.28 -13.82 16 5 H 0.06 1.45 7.35 -52.49 -0.39 1.07 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -24.87 11.32 55.43 0.63 -24.25 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.02 0.36 4.73 -104.63 -0.49 -0.13 16 13 C -0.12 -2.33 8.59 -39.58 -0.34 -2.67 16 14 C -0.09 -1.50 10.04 -39.60 -0.40 -1.90 16 15 C -0.18 -2.87 10.03 -39.52 -0.40 -3.27 16 16 C 0.10 1.79 6.92 -39.42 -0.27 1.52 16 17 F -0.14 -2.28 13.21 2.25 0.03 -2.25 16 18 C -0.17 -3.23 4.85 -104.55 -0.51 -3.74 16 19 C 0.17 3.13 1.19 -91.77 -0.11 3.03 16 20 C -0.17 -2.90 8.68 37.16 0.32 -2.57 16 21 C -0.18 -2.71 7.48 37.16 0.28 -2.43 16 22 F -0.18 -3.97 13.22 2.25 0.03 -3.94 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 25 H 0.02 0.53 7.93 -51.93 -0.41 0.12 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.13 2.55 7.81 -52.49 -0.41 2.14 16 28 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 29 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.69 7.64 -51.93 -0.40 1.29 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.98 7.59 -51.93 -0.39 0.58 16 35 H 0.09 1.21 6.17 -51.93 -0.32 0.89 16 LS Contribution 286.47 15.07 4.32 4.32 Total: -1.00 -27.99 286.47 -6.64 -34.64 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.52 Total: 1.84 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -2.11 Total: -26.25 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.63 Total: -24.25 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.06 Total: -6.19 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.99 -6.64 -34.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.879 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds