Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 C 1.50707 * 109.47083 * 119.99606 * 2 1 3 5 5 C 1.38254 * 119.96312 * 300.00373 * 4 2 1 6 6 C 1.38374 * 119.99813 * 179.97438 * 5 4 2 7 7 F 1.35096 * 120.03395 * 180.02562 * 6 5 4 8 8 C 1.38696 * 119.92797 * 359.97438 * 6 5 4 9 9 F 1.35099 * 120.03284 * 179.97438 * 8 6 5 10 10 C 1.38361 * 119.92841 * 0.02562 * 8 6 5 11 11 C 1.50701 * 119.99897 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47212 * 279.99940 * 11 10 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 C 1.38209 * 119.96207 * 120.25568 * 4 2 1 22 22 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47466 * 300.00095 * 1 2 3 24 24 H 1.08996 * 109.47051 * 60.00938 * 1 2 3 25 25 H 1.08992 * 109.47466 * 239.99905 * 2 1 3 26 26 H 1.09005 * 109.47180 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47217 * 299.99396 * 3 2 1 28 28 H 1.09001 * 109.47386 * 59.99902 * 3 2 1 29 29 H 1.08002 * 119.99979 * 0.02562 * 5 4 2 30 30 H 1.09002 * 109.47060 * 39.99995 * 11 10 8 31 31 H 1.09001 * 109.47380 * 160.00083 * 11 10 8 32 32 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99628 * 12 11 10 34 34 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 35 35 H 1.07998 * 119.96906 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6978 -0.2373 2.4859 6 6 2.1582 -0.8893 3.6162 7 9 1.8313 -0.4280 4.8432 8 6 2.9547 -2.0175 3.4881 9 9 3.4058 -2.6554 4.5903 10 6 3.2877 -2.4883 2.2304 11 6 4.1535 -3.7136 2.0894 12 6 5.6202 -3.3278 2.2913 13 6 6.4860 -4.5532 2.1510 14 1 6.0353 -5.5114 1.9385 15 6 7.8537 -4.4510 2.2927 16 7 8.4026 -3.2840 2.5509 17 14 8.9268 -5.9701 2.1194 18 1 8.0720 -7.1497 1.8317 19 1 9.8883 -5.7725 1.0050 20 1 9.6733 -6.1955 3.3831 21 6 2.8312 -1.8309 1.1029 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.0765 0.6406 2.5842 30 1 3.8652 -4.4505 2.8391 31 1 4.0233 -4.1380 1.0939 32 1 5.9086 -2.5909 1.5417 33 1 5.7506 -2.9033 3.2868 34 1 9.3648 -3.2120 2.6503 35 1 3.0952 -2.1963 0.1215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = -100.709146 kcal Electronic energy + Delta-G solvation = -18413.039804 eV Core-core repulsion = 15238.700490 eV Total energy + Delta-G solvation = -3174.339315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.10384 -48.13999 -39.39573 -35.67467 -33.70936 -31.95768 -29.62009 -28.77628 -27.26095 -25.33074 -23.16499 -22.49781 -21.09396 -19.47168 -17.44418 -16.97083 -16.70766 -16.29082 -15.90515 -14.76844 -14.60054 -14.44160 -14.31471 -14.15640 -13.54667 -13.35078 -13.06178 -12.69808 -12.46596 -12.41484 -12.26433 -11.77520 -11.41977 -11.27514 -11.08420 -10.94391 -10.91002 -10.71239 -10.49515 -9.93664 -9.69070 -9.13764 -8.46498 -8.37328 -8.25635 -6.01525 -4.04830 1.18335 1.27889 3.30766 3.38187 3.42043 3.58527 4.06722 4.44594 4.50666 4.58513 4.81730 5.01947 5.07054 5.21830 5.24405 5.34461 5.34770 5.48959 5.68874 5.71991 5.77866 5.94339 6.03069 6.07303 6.07780 6.13470 6.28924 6.50880 6.52560 6.67991 6.87221 7.09300 7.63237 7.74675 7.96755 8.36469 9.01601 9.59356 11.09741 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.005260 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.262949 B = 5322.280121 C = 5958.269477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.146 4.146 4 C -0.062 4.062 5 C -0.141 4.141 6 C 0.066 3.934 7 F -0.135 7.135 8 C 0.064 3.936 9 F -0.124 7.124 10 C -0.061 4.061 11 C -0.080 4.080 12 C 0.029 3.971 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.101 4.101 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.137 0.863 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.260 0.740 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.449 7.584 -4.583 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.203 4.203 4 C -0.062 4.062 5 C -0.160 4.160 6 C 0.046 3.954 7 F -0.114 7.114 8 C 0.043 3.957 9 F -0.102 7.102 10 C -0.062 4.062 11 C -0.117 4.117 12 C -0.008 4.008 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.120 4.120 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.276 7.660 -4.455 17.660 hybrid contribution 0.791 -0.741 0.509 1.197 sum -14.485 6.919 -3.946 16.531 Atomic orbital electron populations 1.21869 0.94287 1.02152 1.01866 1.20114 0.95887 0.96143 0.95100 1.21881 1.01784 0.94863 1.01809 1.19668 0.97189 0.95420 0.93942 1.20656 1.03421 1.01535 0.90362 1.17646 1.01403 0.95441 0.80922 1.91485 1.91131 1.88121 1.40655 1.17575 1.00250 0.93654 0.84181 1.91527 1.87297 1.80533 1.50878 1.20399 0.96423 0.99054 0.90278 1.20868 0.97002 0.91809 1.02070 1.19090 0.86937 0.97162 0.97620 1.21231 0.91585 0.94480 1.48686 0.92432 1.25021 0.98192 0.95969 0.95188 1.69985 1.11054 1.23379 1.48843 0.86517 0.80491 0.83203 0.77695 1.19675 1.20991 1.20969 1.20962 0.97423 0.95028 0.98550 0.92365 0.92487 0.92329 0.89847 0.92073 0.92324 0.92490 0.84520 0.91439 0.91228 0.96271 0.96203 0.92984 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.01 37.16 0.33 -0.86 16 2 C -0.05 -0.53 3.09 -91.77 -0.28 -0.81 16 3 C -0.15 -1.33 9.01 37.16 0.33 -0.99 16 4 C -0.06 -0.79 4.78 -104.62 -0.50 -1.29 16 5 C -0.14 -1.89 8.69 -39.53 -0.34 -2.23 16 6 C 0.07 1.08 7.31 -39.36 -0.29 0.79 16 7 F -0.14 -2.25 17.18 2.25 0.04 -2.21 16 8 C 0.06 1.19 7.25 -39.37 -0.29 0.90 16 9 F -0.12 -2.58 16.58 2.25 0.04 -2.54 16 10 C -0.06 -1.10 5.14 -104.57 -0.54 -1.64 16 11 C -0.08 -1.66 5.01 -27.88 -0.14 -1.80 16 12 C 0.03 0.75 4.95 -27.89 -0.14 0.62 16 13 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 C -0.10 -1.52 9.29 -39.58 -0.37 -1.88 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 29 H 0.14 1.49 7.10 -52.49 -0.37 1.11 16 30 H 0.07 1.41 7.95 -51.93 -0.41 0.99 16 31 H 0.07 1.32 8.01 -51.93 -0.42 0.90 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.14 1.81 7.92 -52.49 -0.42 1.39 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -30.62 304.51 -7.12 -37.74 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -4.87 Total: -5.17 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.63 Total: -22.71 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.74 Total: -26.35 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.08 Total: -4.76 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.62 -7.12 -37.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.972 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds