Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 C 1.50707 * 109.47083 * 119.99606 * 2 1 3 5 5 C 1.38254 * 119.96312 * 300.00373 * 4 2 1 6 6 C 1.38374 * 119.99813 * 179.97438 * 5 4 2 7 7 F 1.35096 * 120.03395 * 180.02562 * 6 5 4 8 8 C 1.38696 * 119.92797 * 359.97438 * 6 5 4 9 9 F 1.35099 * 120.03284 * 179.97438 * 8 6 5 10 10 C 1.38361 * 119.92841 * 0.02562 * 8 6 5 11 11 C 1.50701 * 119.99897 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47212 * 279.99940 * 11 10 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 C 1.38209 * 119.96207 * 120.25568 * 4 2 1 22 22 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47466 * 300.00095 * 1 2 3 24 24 H 1.08996 * 109.47051 * 60.00938 * 1 2 3 25 25 H 1.08992 * 109.47466 * 239.99905 * 2 1 3 26 26 H 1.09005 * 109.47180 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47217 * 299.99396 * 3 2 1 28 28 H 1.09001 * 109.47386 * 59.99902 * 3 2 1 29 29 H 1.08002 * 119.99979 * 0.02562 * 5 4 2 30 30 H 1.09002 * 109.47060 * 39.99995 * 11 10 8 31 31 H 1.09001 * 109.47380 * 160.00083 * 11 10 8 32 32 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99628 * 12 11 10 34 34 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 35 35 H 1.07998 * 119.96906 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6978 -0.2373 2.4859 6 6 2.1582 -0.8893 3.6162 7 9 1.8313 -0.4280 4.8432 8 6 2.9547 -2.0175 3.4881 9 9 3.4058 -2.6554 4.5903 10 6 3.2877 -2.4883 2.2304 11 6 4.1535 -3.7136 2.0894 12 6 5.6202 -3.3278 2.2913 13 6 6.4860 -4.5532 2.1510 14 1 6.0353 -5.5114 1.9385 15 6 7.8537 -4.4510 2.2927 16 7 8.4026 -3.2840 2.5509 17 14 8.9268 -5.9701 2.1194 18 1 8.0720 -7.1497 1.8317 19 1 9.8883 -5.7725 1.0050 20 1 9.6733 -6.1955 3.3831 21 6 2.8312 -1.8309 1.1029 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.0765 0.6406 2.5842 30 1 3.8652 -4.4505 2.8391 31 1 4.0233 -4.1380 1.0939 32 1 5.9086 -2.5909 1.5417 33 1 5.7506 -2.9033 3.2868 34 1 9.3648 -3.2120 2.6503 35 1 3.0952 -2.1963 0.1215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = -116.073080 kcal Electronic energy + Delta-G solvation = -18413.706034 eV Core-core repulsion = 15238.700490 eV Total energy + Delta-G solvation = -3175.005545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.48799 -49.57428 -40.57852 -36.87309 -35.44971 -33.71310 -31.00501 -30.22373 -27.90398 -27.17094 -24.49491 -23.87265 -22.69048 -20.65764 -18.84578 -18.56449 -18.18532 -17.86062 -17.33257 -16.52656 -16.00255 -15.79022 -15.54984 -15.13703 -14.87143 -14.73386 -14.41811 -14.24863 -13.95303 -13.58947 -13.41724 -13.07096 -12.89492 -12.78285 -12.45757 -12.38170 -11.99076 -11.91546 -11.75842 -11.62919 -11.54445 -11.19833 -10.59214 -9.78795 -9.56763 -8.22121 -6.34450 -0.08020 0.02391 1.39580 1.40576 1.53911 2.33481 2.41261 2.80504 3.11337 3.33618 3.54099 3.57359 3.95270 4.13599 4.18596 4.34626 4.35857 4.51228 4.72030 4.74622 4.81454 4.89628 4.98014 5.00719 5.07031 5.07380 5.14650 5.29059 5.30549 5.44794 5.47584 5.57519 5.65659 5.78014 5.80950 6.18002 6.81888 7.35281 8.90148 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.005260 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.262949 B = 5322.280121 C = 5958.269477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.047 4.047 5 C -0.123 4.123 6 C 0.057 3.943 7 F -0.139 7.139 8 C 0.028 3.972 9 F -0.148 7.148 10 C -0.082 4.082 11 C -0.067 4.067 12 C 0.037 3.963 13 C -0.543 4.543 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.275 1.275 20 H -0.281 1.281 21 C -0.099 4.099 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.171 0.829 30 H 0.058 0.942 31 H 0.088 0.912 32 H -0.002 1.002 33 H -0.019 1.019 34 H 0.264 0.736 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.832 7.952 -6.480 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.204 4.204 4 C -0.047 4.047 5 C -0.142 4.142 6 C 0.037 3.963 7 F -0.118 7.118 8 C 0.008 3.992 9 F -0.127 7.127 10 C -0.083 4.083 11 C -0.104 4.104 12 C 0.000 4.000 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.207 1.207 21 C -0.117 4.117 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.188 0.812 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.017 0.983 33 H -0.001 1.001 34 H 0.073 0.927 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.679 8.026 -6.356 19.571 hybrid contribution 1.159 -0.753 1.064 1.744 sum -15.520 7.273 -5.292 17.938 Atomic orbital electron populations 1.21872 0.92619 1.02406 1.03102 1.20233 0.97128 0.96230 0.93499 1.21904 1.00897 0.94442 1.03169 1.20089 0.95230 0.94197 0.95232 1.21052 1.02201 1.01572 0.89341 1.17837 1.01602 0.95179 0.81710 1.91469 1.91142 1.88036 1.41157 1.17980 1.02167 0.95181 0.83858 1.91451 1.87931 1.81240 1.52038 1.20238 0.97736 0.99057 0.91292 1.20563 0.93997 0.93111 1.02729 1.18898 0.90654 0.95924 0.94572 1.21691 0.92442 0.95406 1.48537 0.91647 1.26018 0.99856 0.99388 0.94581 1.70125 1.11584 1.25922 1.49835 0.85348 0.78414 0.79184 0.77802 1.18273 1.20023 1.20687 1.21232 0.96992 0.95236 0.98211 0.92641 0.92032 0.90425 0.88850 0.93525 0.90240 0.91994 0.81187 0.92356 0.89341 0.98342 1.00097 0.92734 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.01 71.98 0.65 -1.12 16 2 C -0.05 -0.84 3.09 -11.54 -0.04 -0.87 16 3 C -0.15 -2.15 9.01 71.98 0.65 -1.51 16 4 C -0.05 -1.10 4.78 -19.87 -0.09 -1.19 16 5 C -0.12 -3.03 8.69 22.31 0.19 -2.83 16 6 C 0.06 1.85 7.31 22.41 0.16 2.01 16 7 F -0.14 -4.63 17.18 44.97 0.77 -3.86 16 8 C 0.03 1.09 7.25 22.41 0.16 1.25 16 9 F -0.15 -6.58 16.58 44.97 0.75 -5.83 16 10 C -0.08 -3.04 5.14 -19.83 -0.10 -3.14 16 11 C -0.07 -2.84 5.01 29.85 0.15 -2.69 16 12 C 0.04 2.00 4.95 29.85 0.15 2.14 16 13 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 14 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 17 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 C -0.10 -2.83 9.29 22.27 0.21 -2.62 16 22 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.72 7.39 -2.39 -0.02 0.70 16 24 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 1.36 7.87 -2.39 -0.02 1.34 16 26 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.85 7.39 -2.39 -0.02 0.83 16 29 H 0.17 3.04 7.10 -2.91 -0.02 3.02 16 30 H 0.06 2.53 7.95 -2.39 -0.02 2.51 16 31 H 0.09 3.35 8.01 -2.39 -0.02 3.33 16 32 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.16 3.79 7.92 -2.91 -0.02 3.77 16 Total: -1.00 -68.63 304.51 7.69 -60.94 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 1.08 Total: 1.16 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 2.78 Total: -41.31 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.28 Total: -57.85 kcal Atomic # 9 Polarization: -11.21 SS G_CDS: 1.52 Total: -9.69 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.63 7.69 -60.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.134 kcal (2) G-P(sol) polarization free energy of solvation -68.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds