Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 C 1.50708 * 109.46813 * 119.99346 * 2 1 3 5 5 H 1.07999 * 119.99703 * 120.16878 * 4 2 1 6 6 C 1.37876 * 119.99835 * 299.89628 * 4 2 1 7 7 N 1.31517 * 120.00218 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99541 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47082 * 60.00235 * 8 6 4 10 10 H 1.48504 * 109.46747 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47335 * 299.99869 * 8 6 4 12 12 C 1.50695 * 109.47421 * 239.99356 * 2 1 3 13 13 C 1.38235 * 120.00108 * 184.19156 * 12 2 1 14 14 C 1.38241 * 120.00070 * 179.76937 * 13 12 2 15 15 C 1.38237 * 119.99422 * 0.48064 * 14 13 12 16 16 C 1.50704 * 119.99471 * 179.77078 * 15 14 13 17 17 C 1.53000 * 109.46878 * 90.02391 * 16 15 14 18 18 F 1.39901 * 109.47024 * 210.02005 * 16 15 14 19 19 F 1.39898 * 109.47433 * 330.01989 * 16 15 14 20 20 C 1.38236 * 120.00386 * 359.79098 * 15 14 13 21 21 C 1.38234 * 120.00024 * 359.96162 * 20 15 14 22 22 H 1.09002 * 109.47018 * 300.00636 * 1 2 3 23 23 H 1.09000 * 109.46412 * 60.00542 * 1 2 3 24 24 H 1.08996 * 109.46827 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46820 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46658 * 299.99368 * 3 2 1 27 27 H 1.08989 * 109.47862 * 59.99476 * 3 2 1 28 28 H 0.96993 * 119.99481 * 180.02562 * 7 6 4 29 29 H 1.07998 * 120.00096 * 359.97438 * 13 12 2 30 30 H 1.07994 * 119.99934 * 180.24723 * 14 13 12 31 31 H 1.08998 * 109.47214 * 60.00076 * 17 16 15 32 32 H 1.09003 * 109.46493 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47324 * 299.99240 * 17 16 15 34 34 H 1.08004 * 119.99872 * 179.97438 * 20 15 14 35 35 H 1.07994 * 119.99692 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6555 -1.5868 1.1316 6 6 1.7010 -0.2378 2.4828 7 7 0.9470 0.8330 2.6033 8 14 2.3230 -1.1188 4.0081 9 1 3.8081 -1.1215 4.0071 10 1 1.8306 -0.4167 5.2205 11 1 1.8253 -2.5178 4.0093 12 6 2.0324 -0.7105 -1.2303 13 6 3.3885 -0.9131 -1.4062 14 6 3.8490 -1.5691 -2.5325 15 6 2.9541 -2.0137 -3.4877 16 6 3.4565 -2.7242 -4.7181 17 6 3.5206 -4.2288 -4.4476 18 9 2.5867 -2.4791 -5.7860 19 9 4.7340 -2.2533 -5.0396 20 6 1.5984 -1.8061 -3.3145 21 6 1.1376 -1.1546 -2.1858 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9564 0.8898 28 1 0.7142 1.1655 3.4842 29 1 4.0880 -0.5618 -0.6621 30 1 4.9082 -1.7309 -2.6679 31 1 2.5252 -4.5957 -4.1971 32 1 3.8836 -4.7427 -5.3377 33 1 4.1984 -4.4199 -3.6156 34 1 0.8993 -2.1531 -4.0611 35 1 0.0784 -0.9929 -2.0504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260175718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = -89.263124 kcal Electronic energy + Delta-G solvation = -18905.119198 eV Core-core repulsion = 15731.276220 eV Total energy + Delta-G solvation = -3173.842978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.85365 -46.86822 -39.05587 -35.58206 -32.48765 -31.03405 -30.49353 -28.30125 -25.89547 -25.23816 -23.76430 -21.82788 -21.14718 -18.97595 -17.49625 -17.20957 -16.20322 -16.17129 -15.12316 -14.30006 -14.16938 -14.02761 -13.66632 -13.33398 -13.24778 -12.95592 -12.77650 -12.55073 -12.43053 -12.15470 -11.80181 -11.59075 -11.30688 -10.97477 -10.83475 -10.62850 -10.60799 -10.43558 -10.20893 -9.66205 -9.40860 -8.96616 -8.40791 -8.38970 -7.95334 -6.04073 -4.14753 1.77368 1.94894 3.26834 3.31991 3.34796 3.85603 4.20940 4.31339 4.39925 4.58725 4.84176 5.22182 5.36159 5.42223 5.45423 5.61142 5.79738 5.84638 6.10027 6.15100 6.42949 6.49317 6.66729 6.78778 6.81141 6.88523 6.95046 7.09419 7.23171 7.34637 7.54735 7.58698 7.70098 7.99504 8.11889 8.36078 8.84884 9.50645 10.96928 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.033637 B = 0.005556 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.218119 B = 5038.429145 C = 5347.744424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.091 3.909 3 C -0.127 4.127 4 C -0.503 4.503 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.006 4.006 13 C -0.113 4.113 14 C -0.094 4.094 15 C -0.190 4.190 16 C 0.340 3.660 17 C -0.185 4.185 18 F -0.201 7.201 19 F -0.201 7.201 20 C -0.092 4.092 21 C -0.136 4.136 22 H 0.086 0.914 23 H 0.013 0.987 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.010 0.990 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.846 -5.898 -10.293 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.091 3.909 3 C -0.184 4.184 4 C -0.541 4.541 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.006 4.006 13 C -0.131 4.131 14 C -0.112 4.112 15 C -0.190 4.190 16 C 0.304 3.696 17 C -0.243 4.243 18 F -0.182 7.182 19 F -0.182 7.182 20 C -0.110 4.110 21 C -0.153 4.153 22 H 0.105 0.895 23 H 0.032 0.968 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.029 0.971 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.774 -5.761 -10.180 12.022 hybrid contribution 0.387 -0.443 0.687 0.904 sum 3.160 -6.204 -9.493 11.773 Atomic orbital electron populations 1.21904 0.97492 0.99200 1.00541 1.17332 0.92768 0.92138 0.88686 1.21806 0.98563 0.97502 1.00555 1.21011 1.31522 1.12051 0.89518 0.92490 1.24903 0.94903 0.94909 0.98794 1.69797 1.36611 1.22533 1.23408 0.86649 0.79221 0.79798 0.82296 1.20283 1.21255 1.20319 1.20841 0.92691 0.91990 0.95112 1.21098 0.96343 0.99013 0.96681 1.20818 0.98619 0.97885 0.93870 1.19901 0.95380 1.07037 0.96713 1.19457 0.73006 0.94679 0.82435 1.22728 1.05631 0.91595 1.04327 1.92982 1.70097 1.95825 1.59342 1.92983 1.40924 1.90583 1.93714 1.20777 0.93711 0.98684 0.97863 1.21279 1.00580 0.99752 0.93735 0.89507 0.96828 0.95189 0.95266 0.97115 0.89320 0.92860 0.85384 0.86368 0.89250 0.90421 0.89213 0.86429 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 6.92 37.16 0.26 -2.80 16 2 C 0.09 2.12 0.58 -156.81 -0.09 2.03 16 3 C -0.13 -2.94 8.10 37.16 0.30 -2.63 16 4 C -0.50 -12.91 7.58 -34.44 -0.26 -13.17 16 5 H 0.06 1.47 7.48 -52.49 -0.39 1.08 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.41 9.35 55.43 0.52 -22.89 16 8 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C -0.01 -0.13 4.72 -104.63 -0.49 -0.63 16 13 C -0.11 -2.20 8.61 -39.58 -0.34 -2.54 16 14 C -0.09 -1.60 9.40 -39.58 -0.37 -1.97 16 15 C -0.19 -3.10 4.99 -104.62 -0.52 -3.62 16 16 C 0.34 4.86 2.33 -27.88 -0.06 4.79 16 17 C -0.19 -2.02 9.37 37.16 0.35 -1.67 16 18 F -0.20 -3.02 16.21 2.25 0.04 -2.98 16 19 F -0.20 -3.04 16.21 2.25 0.04 -3.00 16 20 C -0.09 -1.54 9.40 -39.58 -0.37 -1.91 16 21 C -0.14 -2.55 8.99 -39.58 -0.36 -2.90 16 22 H 0.09 2.17 6.08 -51.93 -0.32 1.86 16 23 H 0.01 0.27 7.30 -51.93 -0.38 -0.11 16 24 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 25 H 0.03 0.65 7.64 -51.93 -0.40 0.25 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 2.23 6.06 -51.94 -0.31 1.92 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.13 2.50 7.72 -52.49 -0.41 2.09 16 30 H 0.12 1.77 7.60 -52.49 -0.40 1.37 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.12 1.71 7.60 -52.48 -0.40 1.31 16 35 H 0.13 2.29 5.90 -52.49 -0.31 1.98 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -26.45 290.77 -6.65 -33.09 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.54 Total: 1.41 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -2.06 Total: -25.39 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.52 Total: -22.89 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.07 Total: -5.98 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.45 -6.65 -33.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260175718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.170 kcal (2) G-P(sol) polarization free energy of solvation -26.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds