Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 C 1.50708 * 109.46813 * 119.99346 * 2 1 3 5 5 H 1.07999 * 119.99703 * 120.16878 * 4 2 1 6 6 C 1.37876 * 119.99835 * 299.89628 * 4 2 1 7 7 N 1.31517 * 120.00218 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99541 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47082 * 60.00235 * 8 6 4 10 10 H 1.48504 * 109.46747 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47335 * 299.99869 * 8 6 4 12 12 C 1.50695 * 109.47421 * 239.99356 * 2 1 3 13 13 C 1.38235 * 120.00108 * 184.19156 * 12 2 1 14 14 C 1.38241 * 120.00070 * 179.76937 * 13 12 2 15 15 C 1.38237 * 119.99422 * 0.48064 * 14 13 12 16 16 C 1.50704 * 119.99471 * 179.77078 * 15 14 13 17 17 C 1.53000 * 109.46878 * 90.02391 * 16 15 14 18 18 F 1.39901 * 109.47024 * 210.02005 * 16 15 14 19 19 F 1.39898 * 109.47433 * 330.01989 * 16 15 14 20 20 C 1.38236 * 120.00386 * 359.79098 * 15 14 13 21 21 C 1.38234 * 120.00024 * 359.96162 * 20 15 14 22 22 H 1.09002 * 109.47018 * 300.00636 * 1 2 3 23 23 H 1.09000 * 109.46412 * 60.00542 * 1 2 3 24 24 H 1.08996 * 109.46827 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46820 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46658 * 299.99368 * 3 2 1 27 27 H 1.08989 * 109.47862 * 59.99476 * 3 2 1 28 28 H 0.96993 * 119.99481 * 180.02562 * 7 6 4 29 29 H 1.07998 * 120.00096 * 359.97438 * 13 12 2 30 30 H 1.07994 * 119.99934 * 180.24723 * 14 13 12 31 31 H 1.08998 * 109.47214 * 60.00076 * 17 16 15 32 32 H 1.09003 * 109.46493 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47324 * 299.99240 * 17 16 15 34 34 H 1.08004 * 119.99872 * 179.97438 * 20 15 14 35 35 H 1.07994 * 119.99692 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6555 -1.5868 1.1316 6 6 1.7010 -0.2378 2.4828 7 7 0.9470 0.8330 2.6033 8 14 2.3230 -1.1188 4.0081 9 1 3.8081 -1.1215 4.0071 10 1 1.8306 -0.4167 5.2205 11 1 1.8253 -2.5178 4.0093 12 6 2.0324 -0.7105 -1.2303 13 6 3.3885 -0.9131 -1.4062 14 6 3.8490 -1.5691 -2.5325 15 6 2.9541 -2.0137 -3.4877 16 6 3.4565 -2.7242 -4.7181 17 6 3.5206 -4.2288 -4.4476 18 9 2.5867 -2.4791 -5.7860 19 9 4.7340 -2.2533 -5.0396 20 6 1.5984 -1.8061 -3.3145 21 6 1.1376 -1.1546 -2.1858 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9564 0.8898 28 1 0.7142 1.1655 3.4842 29 1 4.0880 -0.5618 -0.6621 30 1 4.9082 -1.7309 -2.6679 31 1 2.5252 -4.5957 -4.1971 32 1 3.8836 -4.7427 -5.3377 33 1 4.1984 -4.4199 -3.6156 34 1 0.8993 -2.1531 -4.0611 35 1 0.0784 -0.9929 -2.0504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260175718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = -100.187594 kcal Electronic energy + Delta-G solvation = -18905.592919 eV Core-core repulsion = 15731.276220 eV Total energy + Delta-G solvation = -3174.316698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.98820 -48.00869 -40.52811 -37.26172 -34.03470 -32.52634 -31.91303 -29.63660 -27.70390 -27.20198 -25.04832 -23.26849 -22.51385 -20.64647 -18.76213 -18.37550 -18.00263 -17.25631 -16.95507 -15.71056 -15.70405 -15.56272 -14.86884 -14.80139 -14.52917 -14.24105 -14.10564 -13.97004 -13.52028 -13.39346 -13.25246 -13.20177 -12.99816 -12.77570 -12.61594 -12.33134 -12.16163 -12.06313 -11.88178 -11.44868 -11.11016 -10.81508 -10.36481 -9.78975 -9.45966 -8.00121 -6.16263 0.36641 0.54021 1.43965 1.45455 1.51718 2.45128 2.73622 2.87241 3.18717 3.23499 3.50841 3.78572 4.10264 4.14100 4.27828 4.55734 4.60276 4.67893 4.80395 4.83811 4.91390 4.93972 5.01835 5.10312 5.15164 5.22332 5.39419 5.49765 5.53178 5.59969 5.69962 5.83998 6.07650 6.16833 6.27674 6.44856 6.88079 7.50977 8.98510 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.033637 B = 0.005556 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.218119 B = 5038.429145 C = 5347.744424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.084 3.916 3 C -0.118 4.118 4 C -0.514 4.514 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 C -0.033 4.033 13 C -0.126 4.126 14 C -0.090 4.090 15 C -0.185 4.185 16 C 0.338 3.662 17 C -0.181 4.181 18 F -0.205 7.205 19 F -0.206 7.206 20 C -0.087 4.087 21 C -0.142 4.142 22 H 0.060 0.940 23 H 0.031 0.969 24 H 0.028 0.972 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.260 0.740 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 -7.356 -11.708 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 C -0.176 4.176 4 C -0.553 4.553 5 H 0.066 0.934 6 C -0.174 4.174 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C -0.033 4.033 13 C -0.144 4.144 14 C -0.108 4.108 15 C -0.186 4.186 16 C 0.302 3.698 17 C -0.239 4.239 18 F -0.186 7.186 19 F -0.187 7.187 20 C -0.105 4.105 21 C -0.160 4.160 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.161 0.839 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.229 -7.222 -11.601 14.041 hybrid contribution 0.265 0.010 1.043 1.076 sum 3.493 -7.212 -10.558 13.255 Atomic orbital electron populations 1.21756 0.97374 0.98935 1.00082 1.17302 0.92898 0.92070 0.89361 1.21674 0.98302 0.97776 0.99839 1.21256 1.31288 1.11889 0.90820 0.93362 1.25514 0.95268 0.95582 1.01062 1.69923 1.37329 1.23376 1.23613 0.85829 0.78709 0.78782 0.79578 1.20051 1.21098 1.20198 1.20664 0.93719 0.93838 0.95080 1.21064 0.95731 1.00062 0.97587 1.20982 0.99893 0.96907 0.93035 1.20219 0.95245 1.05890 0.97263 1.19664 0.72533 0.96329 0.81243 1.22758 1.06608 0.88850 1.05658 1.92979 1.70224 1.96000 1.59383 1.92979 1.41204 1.90870 1.93668 1.21012 0.94452 0.97573 0.97454 1.21348 1.00539 1.00065 0.94063 0.92087 0.95001 0.95256 0.95490 0.95954 0.91691 0.93093 0.86464 0.84344 0.88321 0.88341 0.88546 0.83897 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 6.92 71.98 0.50 -5.18 16 2 C 0.08 3.95 0.58 -53.67 -0.03 3.92 16 3 C -0.12 -5.56 8.10 71.98 0.58 -4.98 16 4 C -0.51 -26.73 7.58 25.60 0.19 -26.53 16 5 H 0.05 2.53 7.48 -2.91 -0.02 2.50 16 6 C 0.03 1.31 5.15 84.65 0.44 1.75 16 7 N -0.90 -48.67 9.35 21.45 0.20 -48.47 16 8 Si 0.94 42.10 29.54 68.60 2.03 44.13 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 C -0.03 -1.36 4.72 -19.87 -0.09 -1.46 16 13 C -0.13 -4.85 8.61 22.27 0.19 -4.66 16 14 C -0.09 -2.91 9.40 22.27 0.21 -2.70 16 15 C -0.19 -5.57 4.99 -19.86 -0.10 -5.67 16 16 C 0.34 8.57 2.33 29.85 0.07 8.64 16 17 C -0.18 -3.28 9.37 71.98 0.67 -2.61 16 18 F -0.20 -5.48 16.21 44.97 0.73 -4.75 16 19 F -0.21 -5.63 16.21 44.97 0.73 -4.90 16 20 C -0.09 -2.68 9.40 22.27 0.21 -2.47 16 21 C -0.14 -5.14 8.99 22.27 0.20 -4.94 16 22 H 0.06 3.11 6.08 -2.39 -0.01 3.09 16 23 H 0.03 1.29 7.30 -2.39 -0.02 1.27 16 24 H 0.03 1.29 7.72 -2.39 -0.02 1.27 16 25 H 0.03 1.21 7.64 -2.39 -0.02 1.20 16 26 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 3.35 6.06 -2.39 -0.01 3.34 16 28 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 29 H 0.12 4.64 7.72 -2.91 -0.02 4.62 16 30 H 0.14 3.83 7.60 -2.91 -0.02 3.81 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.14 3.65 7.60 -2.91 -0.02 3.63 16 35 H 0.13 4.55 5.90 -2.91 -0.02 4.54 16 Total: -1.00 -55.85 290.77 7.81 -48.04 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.08 Total: 12.84 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 3.04 Total: -46.89 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.20 Total: -48.47 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 1.46 Total: -9.65 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -55.85 7.81 -48.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260175718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.152 kcal (2) G-P(sol) polarization free energy of solvation -55.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds