Wall clock time and date at job start Mon Mar 30 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38263 * 120.00088 * 2 1 4 4 C 1.38210 * 120.00074 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99888 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99803 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47184 * 0.02562 * 6 5 4 8 8 F 1.39897 * 109.47532 * 240.00357 * 6 5 4 9 9 F 1.39900 * 109.46844 * 120.00083 * 6 5 4 10 10 C 1.38207 * 120.00280 * 0.25674 * 5 4 3 11 11 C 1.50700 * 120.00449 * 179.72263 * 10 5 4 12 12 C 1.53000 * 109.46955 * 84.99390 * 11 10 5 13 13 C 1.50700 * 109.46955 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00091 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99974 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99879 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00050 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47282 * 89.99749 * 17 15 13 19 19 H 1.48493 * 109.47446 * 210.00121 * 17 15 13 20 20 H 1.48508 * 109.47053 * 329.99912 * 17 15 13 21 21 C 1.38210 * 119.99902 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.47038 * 89.99599 * 1 2 3 23 23 H 1.08999 * 109.46699 * 209.99414 * 1 2 3 24 24 H 1.08997 * 109.47137 * 329.99936 * 1 2 3 25 25 H 1.08002 * 119.99400 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.00029 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47002 * 299.99404 * 7 6 5 28 28 H 1.08993 * 109.46955 * 59.99842 * 7 6 5 29 29 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47471 * 204.99865 * 11 10 5 31 31 H 1.09001 * 109.46892 * 324.99885 * 11 10 5 32 32 H 1.09001 * 109.47419 * 300.00507 * 12 11 10 33 33 H 1.09001 * 109.46916 * 60.00510 * 12 11 10 34 34 H 0.96994 * 119.99682 * 180.02562 * 16 15 13 35 35 H 1.07994 * 120.00508 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 6 6.2887 1.4426 0.0012 8 9 6.2451 -0.6593 -1.1417 9 9 6.2450 -0.6595 1.1428 10 6 3.5807 -1.1969 -0.0054 11 6 4.3342 -2.5020 -0.0117 12 6 4.6981 -2.8877 1.4235 13 6 5.4521 -4.1925 1.4171 14 1 5.6521 -4.6961 0.4828 15 6 5.8865 -4.7435 2.6041 16 7 6.5450 -5.8819 2.5984 17 14 5.5399 -3.8730 4.2200 18 1 4.2406 -4.3412 4.7657 19 1 6.6228 -4.1785 5.1891 20 1 5.4807 -2.4071 3.9898 21 6 2.1981 -1.1969 0.0005 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6583 2.1327 -0.0004 26 1 4.1205 2.1326 0.0001 27 1 5.9255 1.9568 -0.8886 28 1 5.9254 1.9560 0.8913 29 1 7.3787 1.4426 0.0016 30 1 3.7093 -3.2802 -0.4498 31 1 5.2449 -2.3929 -0.6006 32 1 5.3229 -2.1095 1.8616 33 1 3.7873 -2.9968 2.0124 34 1 6.8503 -6.2697 3.4334 35 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260315201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:18 Heat of formation + Delta-G solvation = -89.355730 kcal Electronic energy + Delta-G solvation = -19223.505842 eV Core-core repulsion = 16049.658848 eV Total energy + Delta-G solvation = -3173.846994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.63270 -46.54539 -39.45483 -34.46270 -33.77043 -32.18530 -30.33090 -29.47478 -26.95200 -25.25804 -23.34761 -21.69681 -20.82994 -19.55188 -17.42414 -17.08531 -16.59860 -16.45143 -15.00003 -14.76357 -14.30486 -14.20549 -13.73687 -13.59095 -13.18804 -13.00539 -12.77315 -12.72522 -12.60568 -12.46491 -12.22380 -12.03000 -11.91933 -11.64043 -11.33130 -10.91710 -10.91248 -10.36390 -10.08028 -9.70188 -9.59536 -9.03600 -8.67818 -8.42273 -8.34899 -5.95299 -3.91325 1.28448 1.54991 3.37356 3.44298 3.52100 3.75846 3.97363 4.31393 4.54606 4.63648 4.87275 4.88955 4.96595 5.06934 5.37528 5.39777 5.43564 5.53565 5.58189 5.69590 5.76109 5.79192 5.84212 6.01265 6.13119 6.25488 6.44935 6.52846 6.65170 6.83161 6.87917 7.12710 7.41031 7.60225 7.89701 8.62875 9.09701 9.67880 11.18383 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.007997 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.805656 B = 3500.274793 C = 4226.155912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.170 4.170 6 C 0.337 3.663 7 C -0.193 4.193 8 F -0.194 7.194 9 F -0.176 7.176 10 C -0.017 4.017 11 C -0.089 4.089 12 C -0.020 4.020 13 C -0.513 4.513 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.906 5.906 17 Si 0.875 3.125 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.262 1.262 21 C -0.126 4.126 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.007 0.993 34 H 0.261 0.739 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.104 17.450 -5.742 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.068 4.068 3 C -0.162 4.162 4 C -0.105 4.105 5 C -0.170 4.170 6 C 0.301 3.699 7 C -0.251 4.251 8 F -0.175 7.175 9 F -0.156 7.156 10 C -0.017 4.017 11 C -0.126 4.126 12 C -0.057 4.057 13 C -0.551 4.551 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.546 5.546 17 Si 0.702 3.298 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.187 1.187 21 C -0.144 4.144 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.983 17.284 -5.623 19.852 hybrid contribution -0.057 0.115 0.942 0.951 sum -8.041 17.400 -4.681 19.731 Atomic orbital electron populations 1.20810 0.91222 1.02828 1.02263 1.20018 0.96033 0.93238 0.97538 1.20852 0.93694 0.97429 1.04211 1.20990 0.94378 0.96778 0.98318 1.20104 0.93428 0.94654 1.08863 1.19318 0.89372 0.88608 0.72594 1.22831 1.03746 0.93579 1.04947 1.92989 1.89951 1.83197 1.51314 1.93068 1.89761 1.82463 1.50343 1.20297 0.93981 0.95695 0.91760 1.20918 0.99250 0.90863 1.01543 1.19886 0.96623 0.98447 0.90751 1.21106 1.34605 1.04553 0.94821 0.91112 1.24966 0.94717 0.94685 0.98977 1.69916 1.38999 1.18650 1.27005 0.86835 0.77873 0.81207 0.83862 1.20452 1.21414 1.18694 1.21016 0.93372 0.97813 1.02208 0.91123 0.91321 0.91621 0.86010 0.85380 0.89391 0.89257 0.89850 0.91465 0.90413 0.93697 0.97515 0.92879 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.07 -0.90 5.88 -104.62 -0.62 -1.52 16 3 C -0.14 -1.76 9.70 -39.58 -0.38 -2.15 16 4 C -0.09 -1.14 8.98 -39.59 -0.36 -1.49 16 5 C -0.17 -2.82 5.35 -104.63 -0.56 -3.38 16 6 C 0.34 5.68 1.80 -27.88 -0.05 5.63 16 7 C -0.19 -2.23 8.04 37.16 0.30 -1.93 16 8 F -0.19 -3.56 15.05 2.25 0.03 -3.53 16 9 F -0.18 -3.64 13.37 2.25 0.03 -3.61 16 10 C -0.02 -0.32 5.10 -104.62 -0.53 -0.85 16 11 C -0.09 -1.92 4.63 -27.88 -0.13 -2.05 16 12 C -0.02 -0.51 3.81 -27.88 -0.11 -0.62 16 13 C -0.51 -15.34 9.66 -34.44 -0.33 -15.68 16 14 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.91 -28.94 13.96 55.43 0.77 -28.16 16 17 Si 0.87 22.84 27.47 -169.99 -4.67 18.18 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 20 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 21 C -0.13 -2.01 9.34 -39.58 -0.37 -2.38 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 24 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 25 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.13 1.26 5.90 -52.49 -0.31 0.95 16 27 H 0.09 0.81 7.51 -51.93 -0.39 0.42 16 28 H 0.09 0.89 7.51 -51.93 -0.39 0.50 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 31 H 0.08 1.75 5.74 -51.93 -0.30 1.45 16 32 H 0.05 1.17 4.07 -51.93 -0.21 0.96 16 33 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 34 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 35 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 289.59 15.07 4.36 4.36 Total: -1.00 -33.57 289.59 -6.87 -40.44 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.53 Total: -2.46 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.87 Total: -25.22 kcal Atomic # 7 Polarization: -28.94 SS G_CDS: 0.77 Total: -28.16 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.06 Total: -7.14 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.57 -6.87 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260315201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.916 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds