Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38257 * 119.99801 * 2 1 4 4 C 1.38220 * 119.99636 * 179.76758 * 3 2 1 5 5 C 1.38262 * 119.99891 * 0.52756 * 4 3 2 6 6 C 1.50695 * 119.99679 * 179.74487 * 5 4 3 7 7 F 1.39903 * 109.47430 * 2.81679 * 6 5 4 8 8 F 1.39902 * 109.47022 * 242.81915 * 6 5 4 9 9 C 1.38209 * 120.00046 * 359.47019 * 5 4 3 10 10 C 1.50698 * 120.00160 * 180.27293 * 9 5 4 11 11 C 1.53002 * 109.46794 * 54.76025 * 10 9 5 12 12 C 1.52995 * 109.47289 * 174.76612 * 10 9 5 13 13 C 1.50704 * 109.47018 * 294.76733 * 10 9 5 14 14 H 1.08001 * 120.00265 * 152.11006 * 13 10 9 15 15 C 1.37885 * 119.99805 * 332.10096 * 13 10 9 16 16 N 1.31509 * 119.99669 * 148.09968 * 15 13 10 17 17 Si 1.86797 * 119.99992 * 328.09397 * 15 13 10 18 18 H 1.48503 * 109.46889 * 93.89512 * 17 15 13 19 19 H 1.48498 * 109.47033 * 213.89079 * 17 15 13 20 20 H 1.48500 * 109.47177 * 333.89367 * 17 15 13 21 21 C 1.38216 * 119.99955 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47493 * 269.97581 * 1 2 3 23 23 H 1.09000 * 109.47171 * 29.97759 * 1 2 3 24 24 H 1.09004 * 109.47351 * 149.97985 * 1 2 3 25 25 H 1.07997 * 120.00167 * 0.02562 * 3 2 1 26 26 H 1.07995 * 119.99775 * 180.27487 * 4 3 2 27 27 H 1.09001 * 109.47500 * 122.82404 * 6 5 4 28 28 H 1.08995 * 109.47129 * 33.92343 * 11 10 9 29 29 H 1.09003 * 109.46584 * 153.92049 * 11 10 9 30 30 H 1.09000 * 109.47460 * 273.91865 * 11 10 9 31 31 H 1.08996 * 109.47479 * 59.99904 * 12 10 9 32 32 H 1.09008 * 109.47298 * 180.02562 * 12 10 9 33 33 H 1.09001 * 109.46685 * 299.99697 * 12 10 9 34 34 H 0.96999 * 120.00132 * 179.97438 * 16 15 13 35 35 H 1.08001 * 119.99975 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0049 5 6 4.2717 -0.0001 -0.0013 6 6 5.7786 0.0000 -0.0018 7 9 6.2450 1.3171 0.0694 8 9 6.2446 -0.5967 -1.1783 9 6 3.5806 -1.1970 -0.0013 10 6 4.3341 -2.5021 -0.0018 11 6 5.3103 -2.5278 1.1761 12 6 3.3451 -3.6620 0.1300 13 6 5.1003 -2.6393 -1.2922 14 1 6.0087 -3.2226 -1.3215 15 6 4.6413 -2.0202 -2.4356 16 7 5.4955 -1.5862 -3.3364 17 14 2.8062 -1.7982 -2.7051 18 1 2.3919 -0.4601 -2.2121 19 1 2.5020 -1.9077 -4.1545 20 1 2.0661 -2.8502 -1.9631 21 6 2.1980 -1.1970 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6582 2.1326 0.0004 26 1 4.1203 2.1326 0.0093 27 1 6.1423 -0.5613 0.8588 28 1 4.8767 -1.9899 2.0191 29 1 5.5039 -3.5608 1.4649 30 1 6.2457 -2.0510 0.8832 31 1 2.6497 -3.6437 -0.7091 32 1 3.8902 -4.6060 0.1301 33 1 2.7911 -3.5627 1.0634 34 1 5.1727 -1.1511 -4.1410 35 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260345317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = -46.307868 kcal Electronic energy + Delta-G solvation = -20539.444039 eV Core-core repulsion = 17367.463740 eV Total energy + Delta-G solvation = -3171.980298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.79184 -45.58552 -39.47279 -35.63424 -32.52208 -31.85440 -29.35877 -28.30053 -26.11333 -25.21430 -23.77991 -22.23627 -20.36095 -18.85564 -16.98866 -16.56097 -15.98441 -15.87547 -14.91284 -14.41309 -14.09151 -13.77211 -13.48332 -13.38271 -12.75920 -12.50161 -12.44121 -12.15662 -12.00334 -11.95627 -11.73424 -11.59658 -11.25535 -11.18749 -10.90319 -10.36326 -10.32673 -10.13109 -9.92307 -9.54013 -9.29628 -9.15651 -8.16170 -7.86074 -7.76821 -6.09386 -3.83433 1.80212 2.02461 3.41841 3.45033 3.55446 4.25057 4.54893 4.78297 5.11838 5.17783 5.28623 5.35103 5.51490 5.56716 5.78995 5.83740 5.91936 6.02722 6.15515 6.18219 6.24742 6.37402 6.40420 6.48251 6.56718 6.70893 6.75417 6.83778 6.91666 7.00484 7.15136 7.24572 7.54417 7.58683 7.84733 8.50582 9.01669 9.63441 11.00916 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.014551 C = 0.011910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.377285 B = 1923.774694 C = 2350.394489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.078 4.078 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.147 4.147 6 C 0.289 3.711 7 F -0.229 7.229 8 F -0.129 7.129 9 C -0.005 4.005 10 C 0.067 3.933 11 C -0.137 4.137 12 C -0.150 4.150 13 C -0.529 4.529 14 H 0.076 0.924 15 C 0.108 3.892 16 N -0.847 5.847 17 Si 0.818 3.182 18 H -0.256 1.256 19 H -0.304 1.304 20 H -0.253 1.253 21 C -0.146 4.146 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.024 0.976 34 H 0.260 0.740 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 3.076 8.250 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.078 4.078 3 C -0.162 4.162 4 C -0.111 4.111 5 C -0.148 4.148 6 C 0.235 3.765 7 F -0.210 7.210 8 F -0.109 7.109 9 C -0.005 4.005 10 C 0.066 3.934 11 C -0.194 4.194 12 C -0.208 4.208 13 C -0.565 4.565 14 H 0.094 0.906 15 C -0.099 4.099 16 N -0.479 5.479 17 Si 0.646 3.354 18 H -0.181 1.181 19 H -0.233 1.233 20 H -0.179 1.179 21 C -0.164 4.164 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.140 0.860 27 H 0.130 0.870 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.690 3.196 8.026 10.344 hybrid contribution -1.067 0.271 -0.610 1.259 sum -6.758 3.467 7.415 10.615 Atomic orbital electron populations 1.20753 0.91918 1.02305 1.01758 1.19831 0.95509 0.93462 0.99045 1.20726 0.93845 0.96959 1.04667 1.20899 0.94213 0.97409 0.98532 1.20218 0.94985 0.93991 1.05586 1.20757 0.89646 0.75867 0.90193 1.92857 1.90140 1.40895 1.97146 1.93500 1.89063 1.81310 1.47069 1.20052 0.92975 0.95861 0.91612 1.17643 0.92144 0.87280 0.96363 1.22095 0.99712 1.00724 0.96823 1.22409 0.99652 0.99597 0.99102 1.20442 1.10191 1.35073 0.90784 0.90575 1.24721 0.95961 0.92872 0.96347 1.70201 1.34125 1.33062 1.10547 0.88062 0.89988 0.80957 0.76407 1.18098 1.23268 1.17867 1.21030 0.94153 0.97651 1.03557 0.91439 0.91960 0.91935 0.86779 0.85978 0.87044 0.94680 0.93119 0.92189 0.92283 0.93266 0.95723 0.93047 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 36.00 0.36 -1.19 16 2 C -0.08 -1.43 4.73 -104.63 -0.49 -1.92 16 3 C -0.14 -2.59 9.53 -39.58 -0.38 -2.96 16 4 C -0.09 -1.81 9.43 -39.58 -0.37 -2.19 16 5 C -0.15 -3.17 5.08 -104.63 -0.53 -3.70 16 6 C 0.29 6.22 4.34 36.00 0.16 6.38 16 7 F -0.23 -4.73 16.00 2.25 0.04 -4.70 16 8 F -0.13 -3.37 11.20 2.25 0.03 -3.34 16 9 C 0.00 -0.10 2.32 -104.63 -0.24 -0.34 16 10 C 0.07 1.47 0.49 -156.81 -0.08 1.39 16 11 C -0.14 -2.60 7.44 37.16 0.28 -2.32 16 12 C -0.15 -3.04 6.88 37.15 0.26 -2.79 16 13 C -0.53 -13.90 5.64 -34.44 -0.19 -14.10 16 14 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 15 C 0.11 3.00 3.75 -17.82 -0.07 2.93 16 16 N -0.85 -25.07 12.57 55.43 0.70 -24.37 16 17 Si 0.82 20.63 22.83 -169.99 -3.88 16.75 16 18 H -0.26 -6.41 5.11 56.52 0.29 -6.12 16 19 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 20 H -0.25 -5.95 4.38 56.52 0.25 -5.70 16 21 C -0.15 -2.94 5.08 -39.58 -0.20 -3.14 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 24 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 25 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 26 H 0.12 2.19 7.16 -52.49 -0.38 1.82 16 27 H 0.11 2.13 4.79 -51.93 -0.25 1.88 16 28 H 0.03 0.59 7.89 -51.93 -0.41 0.18 16 29 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 30 H 0.06 1.16 5.15 -51.93 -0.27 0.89 16 31 H 0.06 1.27 4.08 -51.93 -0.21 1.05 16 32 H 0.05 0.95 8.12 -51.92 -0.42 0.53 16 33 H 0.02 0.43 7.76 -51.93 -0.40 0.03 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.13 2.45 5.49 -52.49 -0.29 2.16 16 LS Contribution 260.98 15.07 3.93 3.93 Total: -1.00 -29.57 260.98 -5.24 -34.81 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.54 Total: 0.88 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.51 Total: -23.96 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.70 Total: -24.37 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.06 Total: -8.04 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -3.88 Total: 16.75 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.57 -5.24 -34.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.496 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds