Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99783 * 2 1 4 4 H 1.48509 * 109.47167 * 270.00543 * 3 2 1 5 5 H 1.48500 * 109.47108 * 30.00036 * 3 2 1 6 6 H 1.48503 * 109.47426 * 150.00485 * 3 2 1 7 7 C 1.37873 * 120.00603 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99838 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00411 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47112 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46730 * 180.02562 * 10 9 7 12 12 C 1.38238 * 119.99767 * 90.00546 * 11 10 9 13 13 C 1.38235 * 120.00108 * 179.97438 * 12 11 10 14 14 C 1.38243 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99586 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47116 * 89.99867 * 15 14 13 17 17 C 1.52996 * 109.47210 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.46802 * 65.00159 * 17 16 15 19 19 F 1.39898 * 109.47189 * 185.00172 * 17 16 15 20 20 C 1.38233 * 120.00248 * 0.25361 * 14 13 12 21 21 C 1.38234 * 120.00185 * 270.01952 * 11 10 9 22 22 H 0.96995 * 119.99923 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46834 * 60.00083 * 9 7 2 24 24 H 1.09005 * 109.46893 * 300.00329 * 9 7 2 25 25 H 1.09000 * 109.46955 * 60.00355 * 10 9 7 26 26 H 1.09000 * 109.46884 * 299.99670 * 10 9 7 27 27 H 1.08000 * 120.00559 * 359.97438 * 12 11 10 28 28 H 1.07999 * 120.00165 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.46646 * 209.99280 * 15 14 13 30 30 H 1.09000 * 109.47248 * 329.99998 * 15 14 13 31 31 H 1.09000 * 109.47214 * 300.00167 * 16 15 14 32 32 H 1.09008 * 109.47142 * 59.99333 * 16 15 14 33 33 H 1.08999 * 109.47321 * 305.00008 * 17 16 15 34 34 H 1.08004 * 119.99934 * 179.72684 * 20 14 13 35 35 H 1.07999 * 119.99990 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5287 -2.6362 -0.0022 12 6 6.2198 -2.6372 1.1950 13 6 7.6021 -2.6376 1.1951 14 6 8.2934 -2.6365 -0.0021 15 6 9.8005 -2.6363 -0.0019 16 6 10.3106 -4.0788 -0.0032 17 6 11.8406 -4.0786 -0.0036 18 9 12.3072 -3.5221 1.1921 19 9 12.3070 -5.3925 -0.1198 20 6 7.6023 -2.6296 -1.1992 21 6 6.2199 -2.6348 -1.1993 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6802 0.8889 24 1 3.8746 -0.6798 -0.8911 25 1 3.6581 -3.1496 -0.8925 26 1 3.6588 -3.1508 0.8875 27 1 5.6798 -2.6377 2.1303 28 1 8.1421 -2.6380 2.1305 29 1 10.1637 -2.1217 -0.8915 30 1 10.1637 -2.1233 0.8886 31 1 9.9472 -4.5935 0.8863 32 1 9.9473 -4.5919 -0.8936 33 1 12.2036 -3.4886 -0.8451 34 1 8.1424 -2.6243 -2.1345 35 1 5.6800 -2.6333 -2.1347 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260365395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = -113.365704 kcal Electronic energy + Delta-G solvation = -17527.498055 eV Core-core repulsion = 14352.609911 eV Total energy + Delta-G solvation = -3174.888144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.22409 -47.23683 -39.35038 -35.49711 -33.54241 -31.89761 -30.69939 -29.52608 -26.60195 -24.31337 -22.50767 -22.42515 -21.05014 -19.93410 -17.87793 -17.51099 -16.87918 -16.60666 -15.52203 -15.48537 -14.79460 -14.25911 -14.25622 -13.90931 -13.60103 -13.26136 -13.19204 -13.10579 -12.76841 -12.72033 -12.43148 -12.05661 -11.59005 -11.44460 -11.26870 -11.01261 -10.80130 -10.72839 -10.13546 -9.88897 -9.71077 -9.20937 -8.69862 -8.55261 -8.16848 -6.06346 -4.04779 1.55589 1.63377 3.29825 3.37375 3.42230 3.50223 3.88094 3.99318 4.25603 4.32598 4.43965 4.78252 4.90189 5.08590 5.15215 5.20070 5.28029 5.32035 5.40672 5.48309 5.73215 5.78454 5.86532 6.07141 6.22473 6.37031 6.44741 6.67177 6.72327 6.79567 6.97405 7.24425 7.28926 7.42585 7.76592 8.50955 8.98151 9.56137 11.07013 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.049303 B = 0.003395 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.781048 B = 8244.332285 C = 8430.800240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.073 4.073 11 C -0.060 4.060 12 C -0.119 4.119 13 C -0.114 4.114 14 C -0.109 4.109 15 C -0.074 4.074 16 C -0.166 4.166 17 C 0.260 3.740 18 F -0.207 7.207 19 F -0.209 7.209 20 C -0.115 4.115 21 C -0.120 4.120 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.012 0.988 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.000 -6.734 -1.127 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.042 4.042 10 C -0.110 4.110 11 C -0.060 4.060 12 C -0.137 4.137 13 C -0.132 4.132 14 C -0.109 4.109 15 C -0.111 4.111 16 C -0.204 4.204 17 C 0.206 3.794 18 F -0.188 7.188 19 F -0.190 7.190 20 C -0.133 4.133 21 C -0.138 4.138 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 22.865 -6.634 -1.098 23.833 hybrid contribution 0.347 0.902 0.062 0.969 sum 23.212 -5.732 -1.036 23.932 Atomic orbital electron populations 1.69911 1.06291 1.26923 1.51102 1.25015 0.94716 0.99160 0.94514 0.86794 0.80416 0.83639 0.78576 1.20261 1.21337 1.18967 1.21151 0.89382 0.94536 1.50946 0.90936 1.19543 0.96907 0.91294 0.96496 1.20661 0.87767 1.00445 1.02150 1.20434 0.97581 0.95281 0.92709 1.21113 0.93804 1.00639 0.98156 1.20963 0.94269 1.00816 0.97111 1.19513 0.94163 1.03613 0.93573 1.20436 0.92549 0.94665 1.03478 1.22705 0.91646 0.99894 1.06115 1.22024 0.94067 0.77841 0.85431 1.92986 1.90384 1.85235 1.50235 1.92985 1.90375 1.39375 1.96312 1.20936 0.94271 1.01084 0.96977 1.21104 0.93808 1.00751 0.98129 0.92703 0.96500 0.96961 0.91636 0.91620 0.86015 0.86563 0.90642 0.90322 0.89226 0.88539 0.87289 0.86596 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.12 4.02 -27.88 -0.11 -0.23 16 10 C -0.07 -1.44 5.28 -27.89 -0.15 -1.58 16 11 C -0.06 -1.02 5.13 -104.63 -0.54 -1.56 16 12 C -0.12 -1.84 9.70 -39.58 -0.38 -2.22 16 13 C -0.11 -1.49 9.70 -39.58 -0.38 -1.87 16 14 C -0.11 -1.29 5.13 -104.62 -0.54 -1.83 16 15 C -0.07 -0.63 5.26 -27.88 -0.15 -0.77 16 16 C -0.17 -1.26 5.42 -26.73 -0.14 -1.40 16 17 C 0.26 1.91 5.29 37.16 0.20 2.11 16 18 F -0.21 -1.98 17.02 2.25 0.04 -1.94 16 19 F -0.21 -1.98 17.34 2.25 0.04 -1.94 16 20 C -0.11 -1.45 9.70 -39.58 -0.38 -1.83 16 21 C -0.12 -1.81 9.70 -39.58 -0.38 -2.20 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 26 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 27 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.08 0.66 7.88 -51.93 -0.41 0.26 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 33 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -31.44 305.88 -7.58 -39.03 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.98 Total: -3.10 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -3.40 Total: -26.73 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.77 Total: -27.13 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.44 -7.58 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.340 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds