Wall clock time and date at job start Mon Mar 30 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99783 * 2 1 4 4 H 1.48509 * 109.47167 * 270.00543 * 3 2 1 5 5 H 1.48500 * 109.47108 * 30.00036 * 3 2 1 6 6 H 1.48503 * 109.47426 * 150.00485 * 3 2 1 7 7 C 1.37873 * 120.00603 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99838 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00411 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47112 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46730 * 180.02562 * 10 9 7 12 12 C 1.38238 * 119.99767 * 90.00546 * 11 10 9 13 13 C 1.38235 * 120.00108 * 179.97438 * 12 11 10 14 14 C 1.38243 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99586 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47116 * 89.99867 * 15 14 13 17 17 C 1.52996 * 109.47210 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.46802 * 65.00159 * 17 16 15 19 19 F 1.39898 * 109.47189 * 185.00172 * 17 16 15 20 20 C 1.38233 * 120.00248 * 0.25361 * 14 13 12 21 21 C 1.38234 * 120.00185 * 270.01952 * 11 10 9 22 22 H 0.96995 * 119.99923 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46834 * 60.00083 * 9 7 2 24 24 H 1.09005 * 109.46893 * 300.00329 * 9 7 2 25 25 H 1.09000 * 109.46955 * 60.00355 * 10 9 7 26 26 H 1.09000 * 109.46884 * 299.99670 * 10 9 7 27 27 H 1.08000 * 120.00559 * 359.97438 * 12 11 10 28 28 H 1.07999 * 120.00165 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.46646 * 209.99280 * 15 14 13 30 30 H 1.09000 * 109.47248 * 329.99998 * 15 14 13 31 31 H 1.09000 * 109.47214 * 300.00167 * 16 15 14 32 32 H 1.09008 * 109.47142 * 59.99333 * 16 15 14 33 33 H 1.08999 * 109.47321 * 305.00008 * 17 16 15 34 34 H 1.08004 * 119.99934 * 179.72684 * 20 14 13 35 35 H 1.07999 * 119.99990 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5287 -2.6362 -0.0022 12 6 6.2198 -2.6372 1.1950 13 6 7.6021 -2.6376 1.1951 14 6 8.2934 -2.6365 -0.0021 15 6 9.8005 -2.6363 -0.0019 16 6 10.3106 -4.0788 -0.0032 17 6 11.8406 -4.0786 -0.0036 18 9 12.3072 -3.5221 1.1921 19 9 12.3070 -5.3925 -0.1198 20 6 7.6023 -2.6296 -1.1992 21 6 6.2199 -2.6348 -1.1993 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6802 0.8889 24 1 3.8746 -0.6798 -0.8911 25 1 3.6581 -3.1496 -0.8925 26 1 3.6588 -3.1508 0.8875 27 1 5.6798 -2.6377 2.1303 28 1 8.1421 -2.6380 2.1305 29 1 10.1637 -2.1217 -0.8915 30 1 10.1637 -2.1233 0.8886 31 1 9.9472 -4.5935 0.8863 32 1 9.9473 -4.5919 -0.8936 33 1 12.2036 -3.4886 -0.8451 34 1 8.1424 -2.6243 -2.1345 35 1 5.6800 -2.6333 -2.1347 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:23 Heat of formation + Delta-G solvation = -129.523757 kcal Electronic energy + Delta-G solvation = -17528.198721 eV Core-core repulsion = 14352.609911 eV Total energy + Delta-G solvation = -3175.588810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83945 -47.87152 -40.41685 -36.65083 -35.16993 -33.56095 -31.75845 -30.88296 -27.90451 -25.60585 -23.56367 -23.35316 -22.44872 -21.23929 -19.02335 -18.44836 -18.15116 -17.24715 -16.61222 -16.54734 -16.36326 -15.83196 -15.04254 -14.84087 -14.75857 -14.45578 -14.26608 -14.13535 -14.06664 -14.00127 -13.51472 -13.31900 -12.89724 -12.83821 -12.34981 -12.22697 -11.90644 -11.77407 -11.69715 -11.56836 -11.53076 -11.26911 -10.79068 -9.76124 -9.32416 -8.32065 -6.36527 0.46895 0.56299 1.33408 1.35359 1.47896 2.33896 2.81358 3.02272 3.03094 3.43729 3.68650 3.75336 3.97295 4.02193 4.18719 4.22571 4.28355 4.48031 4.53251 4.67016 4.71255 4.72548 4.77415 4.94479 5.00859 5.14463 5.23264 5.26583 5.40442 5.44550 5.54047 5.66539 5.72750 5.90716 6.19422 6.25183 6.71146 7.28431 8.84747 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.049303 B = 0.003395 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.781048 B = 8244.332285 C = 8430.800240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.535 4.535 8 H 0.034 0.966 9 C 0.002 3.998 10 C -0.063 4.063 11 C -0.089 4.089 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.097 4.097 15 C -0.070 4.070 16 C -0.161 4.161 17 C 0.257 3.743 18 F -0.221 7.221 19 F -0.223 7.223 20 C -0.111 4.111 21 C -0.132 4.132 22 H 0.267 0.733 23 H 0.015 0.985 24 H 0.016 0.984 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.453 -5.763 -1.843 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.573 4.573 8 H 0.052 0.948 9 C -0.036 4.036 10 C -0.101 4.101 11 C -0.089 4.089 12 C -0.152 4.152 13 C -0.135 4.135 14 C -0.097 4.097 15 C -0.107 4.107 16 C -0.199 4.199 17 C 0.204 3.796 18 F -0.203 7.203 19 F -0.205 7.205 20 C -0.129 4.129 21 C -0.150 4.150 22 H 0.076 0.924 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.155 0.845 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 26.330 -5.682 -1.812 26.997 hybrid contribution -0.720 0.495 0.289 0.920 sum 25.610 -5.188 -1.524 26.174 Atomic orbital electron populations 1.70061 1.08237 1.28237 1.52553 1.25998 0.95612 1.03475 0.94044 0.85662 0.79345 0.78348 0.79339 1.18926 1.20677 1.17501 1.21511 0.91996 0.93244 1.50533 0.94791 1.19429 0.93656 0.94200 0.96284 1.20415 0.90527 0.97621 1.01520 1.20182 0.95554 0.98842 0.94349 1.21199 0.95108 1.01343 0.97515 1.21240 0.93335 1.00150 0.98814 1.19925 0.96166 1.00884 0.92749 1.20474 0.89803 0.95449 1.05007 1.22633 0.91969 0.99246 1.06041 1.22385 0.93813 0.77520 0.85922 1.92960 1.90540 1.85369 1.51410 1.92958 1.90501 1.40661 1.96355 1.21279 0.93206 0.99638 0.98748 1.21246 0.95256 1.01074 0.97414 0.92390 0.96656 0.96565 0.92175 0.92468 0.86394 0.84526 0.88059 0.89986 0.90507 0.87585 0.83529 0.83292 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 7 C -0.53 -31.53 9.66 25.60 0.25 -31.28 16 8 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 9 C 0.00 0.08 4.02 29.85 0.12 0.20 16 10 C -0.06 -2.57 5.28 29.85 0.16 -2.41 16 11 C -0.09 -3.00 5.13 -19.87 -0.10 -3.10 16 12 C -0.13 -4.02 9.70 22.27 0.22 -3.81 16 13 C -0.12 -2.81 9.70 22.27 0.22 -2.59 16 14 C -0.10 -1.97 5.13 -19.86 -0.10 -2.07 16 15 C -0.07 -0.88 5.26 29.85 0.16 -0.73 16 16 C -0.16 -1.88 5.42 30.59 0.17 -1.71 16 17 C 0.26 2.90 5.29 71.98 0.38 3.28 16 18 F -0.22 -3.63 17.02 44.97 0.77 -2.86 16 19 F -0.22 -3.69 17.34 44.97 0.78 -2.91 16 20 C -0.11 -2.42 9.70 22.27 0.22 -2.20 16 21 C -0.13 -3.79 9.70 22.27 0.22 -3.57 16 22 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 23 H 0.02 0.73 7.20 -2.38 -0.02 0.72 16 24 H 0.02 0.76 7.57 -2.38 -0.02 0.74 16 25 H 0.06 2.42 8.09 -2.39 -0.02 2.40 16 26 H 0.06 2.33 8.08 -2.39 -0.02 2.31 16 27 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.10 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.08 1.04 7.88 -2.39 -0.02 1.02 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.15 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.12 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -69.75 305.88 7.09 -62.66 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.01 Total: 5.38 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 2.35 Total: -49.19 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.30 Total: -60.03 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.54 Total: -5.78 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -69.75 7.09 -62.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.861 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds