Wall clock time and date at job start Mon Mar 30 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47030 * 2 1 4 4 C 1.50701 * 109.47146 * 120.00300 * 2 1 3 5 5 H 1.07998 * 119.99462 * 272.68638 * 4 2 1 6 6 C 1.37880 * 120.00117 * 92.68851 * 4 2 1 7 7 N 1.31515 * 119.99753 * 160.92763 * 6 4 2 8 8 Si 1.86799 * 119.99965 * 340.65497 * 6 4 2 9 9 H 1.48504 * 109.46836 * 94.33232 * 8 6 4 10 10 H 1.48493 * 109.47104 * 214.33132 * 8 6 4 11 11 H 1.48504 * 109.47160 * 334.33232 * 8 6 4 12 12 C 1.50698 * 109.46956 * 240.00075 * 2 1 3 13 13 C 1.38265 * 120.00309 * 358.75133 * 12 2 1 14 14 C 1.38209 * 120.00222 * 179.97438 * 13 12 2 15 15 C 1.38258 * 119.99891 * 0.02573 * 14 13 12 16 16 C 1.38212 * 120.00427 * 359.97244 * 15 14 13 17 17 C 1.38219 * 120.00255 * 178.47814 * 12 2 1 18 18 C 1.50707 * 119.99430 * 359.97438 * 17 12 2 19 19 C 1.53003 * 109.46587 * 113.28355 * 18 17 12 20 20 F 1.39904 * 109.47246 * 62.92500 * 19 18 17 21 21 F 1.39898 * 109.46609 * 182.92344 * 19 18 17 22 22 H 1.08994 * 109.47163 * 304.73560 * 1 2 3 23 23 H 1.08997 * 109.47202 * 64.74228 * 1 2 3 24 24 H 1.09007 * 109.47003 * 184.73694 * 1 2 3 25 25 H 1.09002 * 109.47464 * 195.34807 * 3 2 1 26 26 H 1.09004 * 109.47144 * 315.34844 * 3 2 1 27 27 H 1.08999 * 109.47213 * 75.34824 * 3 2 1 28 28 H 0.96994 * 119.99354 * 179.72073 * 7 6 4 29 29 H 1.07997 * 119.99294 * 0.02562 * 13 12 2 30 30 H 1.07994 * 120.00171 * 179.97438 * 14 13 12 31 31 H 1.08005 * 120.00060 * 179.97438 * 15 14 13 32 32 H 1.07994 * 120.00153 * 179.97438 * 16 15 14 33 33 H 1.09003 * 109.46729 * 233.28087 * 18 17 12 34 34 H 1.08993 * 109.47217 * 353.28630 * 18 17 12 35 35 H 1.08997 * 109.47383 * 302.92193 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.1710 -0.1632 2.1511 6 6 2.3150 -2.0591 1.1807 7 7 3.0872 -2.6032 2.0957 8 14 1.5949 -3.1147 -0.1818 9 1 2.5700 -3.2159 -1.2973 10 1 1.3031 -4.4719 0.3453 11 1 0.3391 -2.4953 -0.6767 12 6 2.0323 -0.7104 -1.2305 13 6 1.1341 -1.2584 -2.1275 14 6 1.5948 -1.9094 -3.2562 15 6 2.9538 -2.0132 -3.4882 16 6 3.8518 -1.4654 -2.5916 17 6 3.3908 -0.8093 -1.4653 18 6 4.3697 -0.2061 -0.4910 19 6 5.1675 -1.3218 0.1869 20 9 5.9159 -2.0101 -0.7740 21 9 6.0290 -0.7666 1.1391 22 1 -0.3633 0.5855 0.8445 23 1 -0.3633 0.4385 -0.9294 24 1 -0.3633 -1.0242 0.0849 25 1 3.0955 1.4547 -0.2720 26 1 1.4718 2.0287 -0.7223 27 1 1.9160 1.8716 0.9942 28 1 3.2827 -3.5527 2.0630 29 1 0.0726 -1.1769 -1.9465 30 1 0.8932 -2.3378 -3.9567 31 1 3.3139 -2.5223 -4.3700 32 1 4.9133 -1.5469 -2.7725 33 1 5.0519 0.4560 -1.0244 34 1 3.8271 0.3629 0.2639 35 1 4.4816 -2.0130 0.6767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:26 Heat of formation + Delta-G solvation = -58.300474 kcal Electronic energy + Delta-G solvation = -20531.642761 eV Core-core repulsion = 17359.142424 eV Total energy + Delta-G solvation = -3172.500337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.98394 -45.98030 -39.83529 -35.54368 -32.96628 -32.06900 -29.32744 -27.88558 -26.52304 -25.35769 -22.80490 -22.04558 -20.49917 -19.02310 -17.11553 -16.58405 -16.23770 -15.83023 -15.12894 -15.01888 -14.55025 -14.01530 -13.45560 -13.00873 -12.91042 -12.70874 -12.52926 -12.46074 -12.23177 -12.08161 -11.81668 -11.41455 -11.00756 -10.98306 -10.60966 -10.48096 -10.32647 -10.11936 -9.84906 -9.60886 -9.52680 -9.28371 -8.30107 -8.01357 -7.67228 -6.28744 -4.25329 1.92187 2.00458 3.34228 3.36670 3.49318 4.25992 4.39503 4.93613 4.97937 5.27066 5.40626 5.49822 5.57757 5.59602 5.76086 5.91754 6.05322 6.12703 6.16928 6.30019 6.35951 6.43724 6.55776 6.58621 6.66696 6.70008 6.73997 6.91359 6.95606 7.03955 7.16505 7.25705 7.51369 7.58460 7.67720 8.30668 8.75856 9.34197 10.76326 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.014221 C = 0.012121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.385751 B = 1968.484618 C = 2309.567959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 C -0.141 4.141 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.883 5.883 8 Si 0.831 3.169 9 H -0.253 1.253 10 H -0.306 1.306 11 H -0.239 1.239 12 C -0.049 4.049 13 C -0.127 4.127 14 C -0.137 4.137 15 C -0.130 4.130 16 C -0.116 4.116 17 C -0.066 4.066 18 C -0.138 4.138 19 C 0.237 3.763 20 F -0.228 7.228 21 F -0.214 7.214 22 H 0.047 0.953 23 H 0.027 0.973 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.267 0.733 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 3.148 -7.902 8.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.064 3.936 3 C -0.198 4.198 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.122 4.122 7 N -0.521 5.521 8 Si 0.660 3.340 9 H -0.178 1.178 10 H -0.235 1.235 11 H -0.164 1.164 12 C -0.050 4.050 13 C -0.144 4.144 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.134 4.134 17 C -0.066 4.066 18 C -0.175 4.175 19 C 0.184 3.816 20 F -0.209 7.209 21 F -0.196 7.196 22 H 0.066 0.934 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.623 2.989 -7.826 8.400 hybrid contribution -0.238 -0.946 -0.688 1.194 sum -0.861 2.042 -8.514 8.797 Atomic orbital electron populations 1.22204 0.97883 1.01029 0.98728 1.17647 0.92348 0.92550 0.91030 1.22187 1.00843 0.96318 1.00475 1.20925 1.43831 0.93958 0.95772 0.90027 1.25035 0.93424 0.98018 0.95759 1.70000 1.33356 1.12841 1.35916 0.87897 0.83486 0.79348 0.83314 1.17790 1.23464 1.16408 1.20067 0.92386 0.96766 0.95732 1.21165 1.00150 0.99118 0.94008 1.20961 0.95532 1.01070 0.97897 1.20883 0.93373 1.01178 0.99407 1.21075 0.99509 0.98304 0.94471 1.19255 0.93630 0.99035 0.94698 1.22093 0.97393 0.97625 1.00343 1.23056 0.84686 0.94068 0.79772 1.92841 1.80190 1.81625 1.66282 1.92869 1.73623 1.87225 1.65858 0.93389 0.95355 0.92845 0.91896 0.94800 0.92829 0.92325 0.85668 0.87010 0.87038 0.86280 0.91207 0.83575 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 6.98 37.16 0.26 -2.47 16 2 C 0.07 1.36 0.49 -156.81 -0.08 1.28 16 3 C -0.14 -2.61 8.03 37.15 0.30 -2.31 16 4 C -0.51 -12.52 6.60 -34.44 -0.23 -12.75 16 5 H 0.08 2.20 8.03 -52.49 -0.42 1.78 16 6 C 0.08 2.02 3.03 -17.82 -0.05 1.97 16 7 N -0.88 -24.32 12.24 55.43 0.68 -23.64 16 8 Si 0.83 19.85 21.57 -169.99 -3.67 16.18 16 9 H -0.25 -6.00 4.38 56.52 0.25 -5.75 16 10 H -0.31 -7.79 7.11 56.52 0.40 -7.39 16 11 H -0.24 -5.29 3.46 56.52 0.20 -5.10 16 12 C -0.05 -1.02 2.38 -104.62 -0.25 -1.27 16 13 C -0.13 -2.44 5.34 -39.58 -0.21 -2.66 16 14 C -0.14 -2.41 9.03 -39.58 -0.36 -2.76 16 15 C -0.13 -2.29 9.31 -39.58 -0.37 -2.66 16 16 C -0.12 -2.21 8.17 -39.58 -0.32 -2.54 16 17 C -0.07 -1.35 3.50 -104.62 -0.37 -1.72 16 18 C -0.14 -2.81 3.67 -27.88 -0.10 -2.91 16 19 C 0.24 5.33 5.16 37.16 0.19 5.52 16 20 F -0.23 -4.93 15.33 2.25 0.03 -4.90 16 21 F -0.21 -4.90 17.34 2.25 0.04 -4.86 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.03 0.48 7.27 -51.93 -0.38 0.10 16 24 H 0.05 1.09 5.42 -51.92 -0.28 0.80 16 25 H 0.06 1.14 4.57 -51.93 -0.24 0.90 16 26 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 27 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.13 2.30 5.36 -52.49 -0.28 2.01 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.12 2.14 6.94 -52.49 -0.36 1.78 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.15 3.09 3.28 -51.93 -0.17 2.92 16 35 H 0.16 3.86 3.90 -51.93 -0.20 3.66 16 LS Contribution 254.64 15.07 3.84 3.84 Total: -1.00 -26.70 254.64 -5.02 -31.72 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.36 Total: 6.92 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -1.59 Total: -25.27 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.68 Total: -23.64 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -3.67 Total: 16.18 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.70 -5.02 -31.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.579 kcal (2) G-P(sol) polarization free energy of solvation -26.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds