Wall clock time and date at job start Mon Mar 30 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47030 * 2 1 4 4 C 1.50701 * 109.47146 * 120.00300 * 2 1 3 5 5 H 1.07998 * 119.99462 * 272.68638 * 4 2 1 6 6 C 1.37880 * 120.00117 * 92.68851 * 4 2 1 7 7 N 1.31515 * 119.99753 * 160.92763 * 6 4 2 8 8 Si 1.86799 * 119.99965 * 340.65497 * 6 4 2 9 9 H 1.48504 * 109.46836 * 94.33232 * 8 6 4 10 10 H 1.48493 * 109.47104 * 214.33132 * 8 6 4 11 11 H 1.48504 * 109.47160 * 334.33232 * 8 6 4 12 12 C 1.50698 * 109.46956 * 240.00075 * 2 1 3 13 13 C 1.38265 * 120.00309 * 358.75133 * 12 2 1 14 14 C 1.38209 * 120.00222 * 179.97438 * 13 12 2 15 15 C 1.38258 * 119.99891 * 0.02573 * 14 13 12 16 16 C 1.38212 * 120.00427 * 359.97244 * 15 14 13 17 17 C 1.38219 * 120.00255 * 178.47814 * 12 2 1 18 18 C 1.50707 * 119.99430 * 359.97438 * 17 12 2 19 19 C 1.53003 * 109.46587 * 113.28355 * 18 17 12 20 20 F 1.39904 * 109.47246 * 62.92500 * 19 18 17 21 21 F 1.39898 * 109.46609 * 182.92344 * 19 18 17 22 22 H 1.08994 * 109.47163 * 304.73560 * 1 2 3 23 23 H 1.08997 * 109.47202 * 64.74228 * 1 2 3 24 24 H 1.09007 * 109.47003 * 184.73694 * 1 2 3 25 25 H 1.09002 * 109.47464 * 195.34807 * 3 2 1 26 26 H 1.09004 * 109.47144 * 315.34844 * 3 2 1 27 27 H 1.08999 * 109.47213 * 75.34824 * 3 2 1 28 28 H 0.96994 * 119.99354 * 179.72073 * 7 6 4 29 29 H 1.07997 * 119.99294 * 0.02562 * 13 12 2 30 30 H 1.07994 * 120.00171 * 179.97438 * 14 13 12 31 31 H 1.08005 * 120.00060 * 179.97438 * 15 14 13 32 32 H 1.07994 * 120.00153 * 179.97438 * 16 15 14 33 33 H 1.09003 * 109.46729 * 233.28087 * 18 17 12 34 34 H 1.08993 * 109.47217 * 353.28630 * 18 17 12 35 35 H 1.08997 * 109.47383 * 302.92193 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.1710 -0.1632 2.1511 6 6 2.3150 -2.0591 1.1807 7 7 3.0872 -2.6032 2.0957 8 14 1.5949 -3.1147 -0.1818 9 1 2.5700 -3.2159 -1.2973 10 1 1.3031 -4.4719 0.3453 11 1 0.3391 -2.4953 -0.6767 12 6 2.0323 -0.7104 -1.2305 13 6 1.1341 -1.2584 -2.1275 14 6 1.5948 -1.9094 -3.2562 15 6 2.9538 -2.0132 -3.4882 16 6 3.8518 -1.4654 -2.5916 17 6 3.3908 -0.8093 -1.4653 18 6 4.3697 -0.2061 -0.4910 19 6 5.1675 -1.3218 0.1869 20 9 5.9159 -2.0101 -0.7740 21 9 6.0290 -0.7666 1.1391 22 1 -0.3633 0.5855 0.8445 23 1 -0.3633 0.4385 -0.9294 24 1 -0.3633 -1.0242 0.0849 25 1 3.0955 1.4547 -0.2720 26 1 1.4718 2.0287 -0.7223 27 1 1.9160 1.8716 0.9942 28 1 3.2827 -3.5527 2.0630 29 1 0.0726 -1.1769 -1.9465 30 1 0.8932 -2.3378 -3.9567 31 1 3.3139 -2.5223 -4.3700 32 1 4.9133 -1.5469 -2.7725 33 1 5.0519 0.4560 -1.0244 34 1 3.8271 0.3629 0.2639 35 1 4.4816 -2.0130 0.6767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:25 Heat of formation + Delta-G solvation = -72.886753 kcal Electronic energy + Delta-G solvation = -20532.275270 eV Core-core repulsion = 17359.142424 eV Total energy + Delta-G solvation = -3173.132845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.77085 -47.77321 -41.33678 -37.10234 -34.55328 -33.93674 -30.78732 -29.41262 -28.04678 -27.22522 -24.45137 -23.54396 -22.01415 -20.68472 -18.85650 -18.34689 -17.99506 -17.47263 -16.94616 -16.57658 -16.06946 -15.53154 -14.98733 -14.77215 -14.69273 -14.45849 -14.20708 -14.14891 -13.83659 -13.65088 -13.47934 -12.88117 -12.66416 -12.45324 -12.26247 -12.18793 -12.07988 -11.72838 -11.48724 -11.25046 -11.18555 -10.95804 -10.22474 -9.49126 -9.20746 -8.27581 -6.24512 0.47311 0.54811 1.44070 1.48411 1.55629 2.42018 2.81350 3.02958 3.25177 3.69905 3.75236 4.01337 4.09060 4.20184 4.26377 4.36480 4.56803 4.62063 4.65948 4.80580 4.83015 4.92148 4.96160 5.08953 5.17777 5.21057 5.26844 5.37271 5.48140 5.60016 5.67731 5.71294 5.78287 6.03539 6.20559 6.36129 6.77224 7.36708 8.79112 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.014221 C = 0.012121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.385751 B = 1968.484618 C = 2309.567959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 C -0.138 4.138 4 C -0.495 4.495 5 H 0.045 0.955 6 C 0.042 3.958 7 N -0.924 5.924 8 Si 0.870 3.130 9 H -0.248 1.248 10 H -0.336 1.336 11 H -0.208 1.208 12 C -0.068 4.068 13 C -0.139 4.139 14 C -0.133 4.133 15 C -0.128 4.128 16 C -0.127 4.127 17 C -0.084 4.084 18 C -0.131 4.131 19 C 0.234 3.766 20 F -0.223 7.223 21 F -0.221 7.221 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.260 0.740 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 3.604 -10.756 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.058 3.942 3 C -0.195 4.195 4 C -0.533 4.533 5 H 0.064 0.936 6 C -0.154 4.154 7 N -0.564 5.564 8 Si 0.700 3.300 9 H -0.173 1.173 10 H -0.267 1.267 11 H -0.132 1.132 12 C -0.068 4.068 13 C -0.157 4.157 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.084 4.084 18 C -0.168 4.168 19 C 0.181 3.819 20 F -0.205 7.205 21 F -0.202 7.202 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.154 0.846 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.689 3.480 -10.699 11.377 hybrid contribution 0.139 -1.047 0.205 1.075 sum -1.550 2.433 -10.494 10.883 Atomic orbital electron populations 1.22113 0.96391 1.00595 1.00367 1.17662 0.93502 0.93409 0.89616 1.22128 1.01275 0.95186 1.00935 1.21070 1.42424 0.93620 0.96142 0.93643 1.25491 0.93747 0.98995 0.97199 1.70121 1.35509 1.12531 1.38267 0.87339 0.84438 0.76597 0.81641 1.17278 1.26719 1.13206 1.20048 0.92804 0.97853 0.96084 1.21393 1.00500 0.99308 0.94462 1.21392 0.96280 0.99742 0.97623 1.21311 0.93297 1.00106 0.99863 1.21286 1.00399 0.98348 0.94436 1.19336 0.93643 1.00109 0.95288 1.22014 0.97565 0.96931 1.00290 1.22983 0.84470 0.94582 0.79877 1.92840 1.80060 1.81681 1.65906 1.92851 1.73806 1.87245 1.66334 0.93169 0.92530 0.94032 0.91805 0.92423 0.93337 0.93042 0.84553 0.83478 0.83757 0.85651 0.88983 0.84733 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 6.98 71.98 0.50 -4.46 16 2 C 0.06 2.37 0.49 -53.68 -0.03 2.34 16 3 C -0.14 -4.89 8.03 71.98 0.58 -4.31 16 4 C -0.50 -24.68 6.60 25.60 0.17 -24.51 16 5 H 0.05 2.54 8.03 -2.91 -0.02 2.52 16 6 C 0.04 2.22 3.03 84.66 0.26 2.48 16 7 N -0.92 -52.72 12.24 21.45 0.26 -52.45 16 8 Si 0.87 40.50 21.57 68.60 1.48 41.98 16 9 H -0.25 -11.20 4.38 99.48 0.44 -10.77 16 10 H -0.34 -17.12 7.11 99.48 0.71 -16.41 16 11 H -0.21 -8.58 3.46 99.48 0.34 -8.23 16 12 C -0.07 -2.63 2.38 -19.86 -0.05 -2.67 16 13 C -0.14 -4.81 5.34 22.27 0.12 -4.69 16 14 C -0.13 -4.02 9.03 22.27 0.20 -3.82 16 15 C -0.13 -3.92 9.31 22.27 0.21 -3.72 16 16 C -0.13 -4.47 8.17 22.27 0.18 -4.29 16 17 C -0.08 -3.26 3.50 -19.86 -0.07 -3.33 16 18 C -0.13 -5.24 3.67 29.85 0.11 -5.13 16 19 C 0.23 10.56 5.16 71.98 0.37 10.93 16 20 F -0.22 -9.52 15.33 44.97 0.69 -8.84 16 21 F -0.22 -10.24 17.34 44.97 0.78 -9.46 16 22 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 1.72 7.27 -2.39 -0.02 1.70 16 24 H 0.04 1.58 5.42 -2.38 -0.01 1.56 16 25 H 0.06 2.23 4.57 -2.39 -0.01 2.22 16 26 H 0.06 1.74 8.05 -2.38 -0.02 1.72 16 27 H 0.05 1.72 8.02 -2.39 -0.02 1.70 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.14 4.36 5.36 -2.91 -0.02 4.35 16 30 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.13 4.18 6.94 -2.91 -0.02 4.16 16 33 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.14 5.68 3.28 -2.39 -0.01 5.67 16 35 H 0.13 6.74 3.90 -2.39 -0.01 6.73 16 Total: -1.00 -57.78 254.64 6.24 -51.55 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.47 Total: 22.39 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 2.55 Total: -45.17 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.26 Total: -52.45 kcal Atomic # 9 Polarization: -19.76 SS G_CDS: 1.47 Total: -18.29 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.48 Total: 41.98 kcal Total: -57.78 6.24 -51.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.341 kcal (2) G-P(sol) polarization free energy of solvation -57.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds