Wall clock time and date at job start Mon Mar 30 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39900 * 109.47353 * 2 1 4 4 F 1.39906 * 109.47313 * 240.00359 * 2 1 3 5 5 C 1.52993 * 109.47307 * 119.99870 * 2 1 3 6 6 C 1.50702 * 109.47549 * 179.97438 * 5 2 1 7 7 C 1.38256 * 120.00325 * 265.00746 * 6 5 2 8 8 C 1.38211 * 120.00062 * 180.25725 * 7 6 5 9 9 C 1.38258 * 119.99774 * 359.52161 * 8 7 6 10 10 C 1.38211 * 120.00175 * 0.43545 * 9 8 7 11 11 C 1.38215 * 119.99534 * 84.97759 * 6 5 2 12 12 C 1.50700 * 120.00244 * 0.02562 * 11 6 5 13 13 C 1.52998 * 109.47390 * 84.99352 * 12 11 6 14 14 C 1.50700 * 109.47011 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00087 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00006 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99869 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00179 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47269 * 60.00166 * 18 16 14 20 20 H 1.48496 * 109.47242 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47376 * 300.00150 * 18 16 14 22 22 H 1.09004 * 109.46668 * 300.00179 * 1 2 3 23 23 H 1.08998 * 109.46928 * 59.99432 * 1 2 3 24 24 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47257 * 59.99940 * 5 2 1 26 26 H 1.08998 * 109.47259 * 300.00091 * 5 2 1 27 27 H 1.08002 * 119.99676 * 359.97122 * 7 6 5 28 28 H 1.07998 * 120.00348 * 179.72205 * 8 7 6 29 29 H 1.08003 * 120.00342 * 180.21025 * 9 8 7 30 30 H 1.08001 * 120.00392 * 179.78930 * 10 9 8 31 31 H 1.08998 * 109.47066 * 205.00181 * 12 11 6 32 32 H 1.09002 * 109.46803 * 324.99456 * 12 11 6 33 33 H 1.08994 * 109.47243 * 300.00266 * 13 12 11 34 34 H 1.09002 * 109.47062 * 60.00262 * 13 12 11 35 35 H 0.97004 * 119.99895 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1424 5 6 2.0400 -0.7212 1.2492 6 6 3.5470 -0.7218 1.2489 7 6 4.2379 -1.8072 0.7428 8 6 5.6200 -1.8099 0.7475 9 6 6.3117 -0.7230 1.2492 10 6 5.6211 0.3624 1.7543 11 6 4.2385 0.3631 1.7541 12 6 3.4855 1.5463 2.3056 13 6 3.1222 1.2829 3.7683 14 6 2.3686 2.4658 4.3196 15 1 2.1685 3.3199 3.6896 16 6 1.9347 2.4578 5.6282 17 7 2.1788 1.4179 6.3955 18 14 1.0001 3.9237 6.3114 19 1 -0.2414 4.1303 5.5231 20 1 0.6475 3.6681 7.7310 21 1 1.8504 5.1379 6.2229 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -1.7489 1.2492 26 1 1.6767 -0.2074 2.1392 27 1 3.6975 -2.6549 0.3481 28 1 6.1597 -2.6597 0.3563 29 1 7.3917 -0.7236 1.2497 30 1 6.1614 1.2100 2.1493 31 1 4.1106 2.4369 2.2411 32 1 2.5746 1.6991 1.7268 33 1 2.4971 0.3923 3.8327 34 1 4.0331 1.1301 4.3471 35 1 1.8732 1.4121 7.3162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260408859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:34 Heat of formation + Delta-G solvation = -115.999084 kcal Electronic energy + Delta-G solvation = -19089.279232 eV Core-core repulsion = 15914.276896 eV Total energy + Delta-G solvation = -3175.002336 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.93340 -47.92546 -40.43787 -36.01822 -34.88168 -33.80415 -31.84575 -30.61875 -27.92626 -26.74934 -23.68671 -23.32791 -22.44293 -21.11302 -18.58084 -18.51926 -17.78116 -17.37700 -16.68829 -16.58579 -16.44325 -15.77125 -14.86468 -14.60802 -14.51400 -14.28120 -14.14234 -14.05166 -13.77801 -13.45809 -13.43146 -13.14943 -13.03352 -12.96875 -12.81251 -12.52486 -12.23915 -11.92489 -11.74805 -11.48746 -11.47306 -11.08476 -10.53484 -9.67126 -9.38090 -8.18821 -6.30589 0.44639 0.55842 1.40174 1.42806 1.50944 2.41221 2.77541 3.00443 3.13570 3.34589 3.49347 3.52216 4.01376 4.05238 4.17076 4.23586 4.38591 4.49919 4.62927 4.72011 4.73435 4.80182 4.92021 4.94810 5.04000 5.06456 5.20539 5.32679 5.52281 5.56604 5.63498 5.64839 5.85966 5.92869 6.17823 6.25788 6.85114 7.38491 8.92155 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.007117 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.134447 B = 3933.338727 C = 4853.984821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.286 3.714 3 F -0.209 7.209 4 F -0.207 7.207 5 C -0.125 4.125 6 C -0.113 4.113 7 C -0.109 4.109 8 C -0.135 4.135 9 C -0.117 4.117 10 C -0.145 4.145 11 C -0.073 4.073 12 C -0.086 4.086 13 C 0.045 3.955 14 C -0.543 4.543 15 H 0.058 0.942 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.270 1.270 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.124 0.876 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.086 0.914 33 H -0.001 1.001 34 H -0.019 1.019 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -6.909 -13.417 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.250 3.750 3 F -0.191 7.191 4 F -0.188 7.188 5 C -0.163 4.163 6 C -0.113 4.113 7 C -0.127 4.127 8 C -0.153 4.153 9 C -0.135 4.135 10 C -0.163 4.163 11 C -0.073 4.073 12 C -0.123 4.123 13 C 0.008 3.992 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.786 3.214 19 H -0.189 1.189 20 H -0.207 1.207 21 H -0.195 1.195 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.131 0.869 25 H 0.142 0.858 26 H 0.112 0.888 27 H 0.161 0.839 28 H 0.170 0.830 29 H 0.164 0.836 30 H 0.135 0.865 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.018 0.982 34 H -0.001 1.001 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.036 -6.955 -13.278 14.989 hybrid contribution -0.099 0.940 0.763 1.214 sum -0.064 -6.015 -12.515 13.886 Atomic orbital electron populations 1.22797 0.88866 1.07061 1.05938 1.21398 0.95193 0.74943 0.83443 1.92893 1.90954 1.38966 1.96240 1.92967 1.91001 1.81004 1.53849 1.21728 0.93158 1.04169 0.97235 1.19665 0.95014 0.95231 1.01420 1.21301 0.95087 0.97634 0.98661 1.21419 0.94054 0.99186 1.00641 1.21433 1.00958 0.93210 0.97916 1.21253 0.93616 1.00027 1.01385 1.20167 0.94589 0.96135 0.96434 1.20949 1.00053 0.94096 0.97242 1.18845 0.94273 0.95592 0.90523 1.21631 1.35894 1.03521 0.97060 0.92383 1.25922 0.97077 0.99002 0.97363 1.70097 1.47664 1.31526 1.07780 0.85556 0.79255 0.79291 0.77305 1.18869 1.20737 1.19524 0.89079 0.89124 0.86899 0.85770 0.88812 0.83858 0.82981 0.83646 0.86467 0.93425 0.89609 0.98237 1.00068 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.99 9.38 71.98 0.68 -3.31 16 2 C 0.29 8.24 2.11 30.59 0.06 8.31 16 3 F -0.21 -7.41 13.58 44.97 0.61 -6.80 16 4 F -0.21 -6.00 16.73 44.97 0.75 -5.25 16 5 C -0.13 -3.85 4.45 29.85 0.13 -3.72 16 6 C -0.11 -3.91 4.75 -19.86 -0.09 -4.01 16 7 C -0.11 -3.13 9.63 22.27 0.21 -2.91 16 8 C -0.14 -3.54 10.05 22.27 0.22 -3.32 16 9 C -0.12 -3.37 10.05 22.27 0.22 -3.14 16 10 C -0.14 -5.17 9.68 22.27 0.22 -4.95 16 11 C -0.07 -2.90 4.91 -19.86 -0.10 -2.99 16 12 C -0.09 -3.88 4.40 29.85 0.13 -3.75 16 13 C 0.04 2.42 4.78 29.85 0.14 2.56 16 14 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 15 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 16 C 0.00 0.25 5.46 84.65 0.46 0.71 16 17 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 18 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.12 2.96 8.05 -2.39 -0.02 2.94 16 26 H 0.09 3.40 5.63 -2.39 -0.01 3.38 16 27 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 28 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 31 H 0.05 2.15 8.05 -2.39 -0.02 2.13 16 32 H 0.09 3.76 4.26 -2.39 -0.01 3.75 16 33 H 0.00 -0.04 6.80 -2.39 -0.02 -0.05 16 34 H -0.02 -1.15 8.14 -2.39 -0.02 -1.16 16 35 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -68.03 296.84 7.28 -60.75 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.08 Total: 12.99 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 2.53 Total: -51.60 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 1.36 Total: -12.05 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.03 7.28 -60.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.253 kcal (2) G-P(sol) polarization free energy of solvation -68.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds