Wall clock time and date at job start Mon Mar 30 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39896 * 109.47106 * 2 1 4 4 F 1.39897 * 109.46754 * 240.00130 * 2 1 3 5 5 C 1.53000 * 109.46841 * 120.00285 * 2 1 3 6 6 C 1.50696 * 109.46730 * 179.97438 * 5 2 1 7 7 C 1.38238 * 119.99767 * 90.00546 * 6 5 2 8 8 C 1.38235 * 120.00108 * 179.97438 * 7 6 5 9 9 C 1.38243 * 119.99617 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99586 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47116 * 89.99867 * 10 9 8 12 12 C 1.50696 * 109.47110 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00031 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00185 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47149 * 90.00329 * 16 14 12 18 18 H 1.48498 * 109.47145 * 210.00267 * 16 14 12 19 19 H 1.48503 * 109.46880 * 330.00167 * 16 14 12 20 20 C 1.38233 * 120.00248 * 0.25361 * 9 8 7 21 21 C 1.38234 * 120.00185 * 270.01952 * 6 5 2 22 22 H 1.09000 * 109.46823 * 300.00361 * 1 2 3 23 23 H 1.08999 * 109.46740 * 59.99454 * 1 2 3 24 24 H 1.08991 * 109.47490 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46955 * 60.00000 * 5 2 1 26 26 H 1.09000 * 109.46884 * 299.99316 * 5 2 1 27 27 H 1.08000 * 120.00559 * 359.97438 * 7 6 5 28 28 H 1.07999 * 120.00165 * 179.97438 * 8 7 6 29 29 H 1.09000 * 109.46646 * 209.99280 * 10 9 8 30 30 H 1.09000 * 109.47248 * 329.99998 * 10 9 8 31 31 H 1.09000 * 109.47214 * 300.00167 * 11 10 9 32 32 H 1.09008 * 109.47142 * 59.99333 * 11 10 9 33 33 H 0.97000 * 120.00433 * 179.97438 * 15 14 12 34 34 H 1.08004 * 119.99934 * 179.72684 * 20 9 8 35 35 H 1.07999 * 119.99990 * 0.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 3.5470 -0.7219 1.2489 7 6 4.2386 0.3147 1.8473 8 6 5.6209 0.3140 1.8475 9 6 6.3116 -0.7230 1.2487 10 6 7.8187 -0.7235 1.2485 11 6 8.3287 -1.4449 2.4976 12 6 9.8357 -1.4459 2.4970 13 1 10.3757 -0.9784 1.6869 14 6 10.5251 -2.0436 3.5307 15 7 11.8402 -2.0441 3.5304 16 14 9.5911 -2.8516 4.9322 17 1 9.3421 -4.2782 4.6035 18 1 10.3945 -2.7637 6.1780 19 1 8.2943 -2.1553 5.1292 20 6 5.6200 -1.7567 0.6453 21 6 4.2377 -1.7587 0.6499 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6766 -1.7490 1.2491 26 1 1.6767 -0.2074 2.1392 27 1 3.6990 1.1251 2.3147 28 1 6.1613 1.1241 2.3147 29 1 8.1816 -1.2376 0.3584 30 1 8.1824 0.3040 1.2484 31 1 7.9657 -0.9309 3.3877 32 1 7.9650 -2.4725 2.4978 33 1 12.3253 -2.4643 4.2578 34 1 6.1597 -2.5646 0.1737 35 1 3.6973 -2.5682 0.1818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260437171.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:37 Heat of formation + Delta-G solvation = -103.629913 kcal Electronic energy + Delta-G solvation = -18116.957476 eV Core-core repulsion = 14942.491507 eV Total energy + Delta-G solvation = -3174.465969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.03304 -47.02414 -39.19914 -34.99302 -33.31596 -31.95229 -30.64809 -30.03226 -27.23403 -24.50281 -22.45196 -22.16209 -21.08090 -19.92666 -17.68866 -16.94296 -16.71868 -16.61620 -15.29405 -15.24600 -14.74214 -14.23389 -13.97468 -13.40535 -13.37917 -13.20607 -13.04401 -12.90468 -12.83207 -12.69710 -12.48476 -12.25095 -12.12934 -11.53080 -11.39891 -11.02092 -10.71654 -10.70160 -10.11279 -9.85801 -9.68730 -9.18430 -8.63404 -8.52934 -8.14956 -6.04179 -4.02407 1.56359 1.70211 3.31503 3.38738 3.43825 3.59587 3.89427 4.08387 4.18459 4.30915 4.45927 4.82583 4.88643 5.12933 5.19204 5.23146 5.30189 5.40780 5.43782 5.46310 5.47261 5.80860 5.86813 6.12022 6.24131 6.41599 6.48334 6.71182 6.74034 6.82856 7.01484 7.27710 7.32822 7.45753 7.78955 8.53476 9.00576 9.58313 11.09216 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.046619 B = 0.004044 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.466723 B = 6921.844153 C = 7037.257655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.289 3.711 3 F -0.199 7.199 4 F -0.199 7.199 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.101 4.101 8 C -0.122 4.122 9 C -0.054 4.054 10 C -0.073 4.073 11 C -0.005 4.005 12 C -0.522 4.522 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.123 4.123 21 C -0.101 4.101 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.017 0.983 32 H 0.012 0.988 33 H 0.263 0.737 34 H 0.123 0.877 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.288 3.042 -5.196 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.253 3.747 3 F -0.180 7.180 4 F -0.180 7.180 5 C -0.152 4.152 6 C -0.123 4.123 7 C -0.119 4.119 8 C -0.140 4.140 9 C -0.054 4.054 10 C -0.110 4.110 11 C -0.042 4.042 12 C -0.559 4.559 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.141 4.141 21 C -0.119 4.119 22 H 0.107 0.893 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.107 3.003 -5.122 24.827 hybrid contribution -0.232 -0.431 0.701 0.855 sum -24.339 2.572 -4.421 24.871 Atomic orbital electron populations 1.22784 0.91817 1.05334 1.05275 1.21097 0.93093 0.76022 0.84459 1.93018 1.90611 1.37509 1.96856 1.93018 1.90614 1.80919 1.53443 1.21553 0.94312 1.02714 0.96619 1.19351 0.93376 0.96876 1.02648 1.20931 0.94338 0.97439 0.99228 1.21090 0.93711 0.99043 1.00203 1.20455 0.97595 0.93218 0.94176 1.20671 0.87722 1.01775 1.00879 1.19541 0.96901 0.95074 0.92720 1.21154 0.89389 1.36781 1.08625 0.90919 1.25015 0.94714 0.95705 0.97980 1.69913 1.06287 1.45076 1.32987 0.86790 0.80409 0.80196 0.82018 1.20264 1.21355 1.18971 1.21089 0.93706 0.98787 1.00496 1.20930 0.94343 0.97792 0.98871 0.89290 0.90102 0.89291 0.88277 0.88276 0.86515 0.85920 0.91592 0.91566 0.96488 0.96938 0.92724 0.85915 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 9.38 37.16 0.35 -0.84 16 2 C 0.29 2.89 2.11 -26.73 -0.06 2.83 16 3 F -0.20 -2.46 16.53 2.25 0.04 -2.42 16 4 F -0.20 -2.46 16.53 2.25 0.04 -2.42 16 5 C -0.11 -1.08 4.94 -27.89 -0.14 -1.22 16 6 C -0.12 -1.64 4.74 -104.63 -0.50 -2.14 16 7 C -0.10 -1.45 9.42 -39.58 -0.37 -1.83 16 8 C -0.12 -2.01 9.70 -39.58 -0.38 -2.40 16 9 C -0.05 -0.98 5.13 -104.62 -0.54 -1.52 16 10 C -0.07 -1.49 5.28 -27.88 -0.15 -1.64 16 11 C -0.01 -0.12 4.02 -27.89 -0.11 -0.23 16 12 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 13 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 16 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 20 C -0.12 -2.01 9.70 -39.58 -0.38 -2.40 16 21 C -0.10 -1.45 9.42 -39.58 -0.37 -1.82 16 22 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 26 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 30 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 31 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 32 H 0.01 0.30 7.57 -51.92 -0.39 -0.09 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 304.30 15.07 4.59 4.59 Total: -1.00 -32.32 304.30 -7.31 -39.63 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.99 Total: -2.71 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -3.08 Total: -26.70 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 0.77 Total: -27.36 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.07 Total: -4.84 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.32 -7.31 -39.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437171.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.998 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds