Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39900 * 109.47416 * 2 1 4 4 F 1.39902 * 109.47065 * 239.99540 * 2 1 3 5 5 C 1.53005 * 109.46614 * 119.99872 * 2 1 3 6 6 C 1.50706 * 109.46710 * 179.97438 * 5 2 1 7 7 C 1.38253 * 120.00297 * 269.95223 * 6 5 2 8 8 C 1.38205 * 119.99884 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.00475 * 0.02562 * 8 7 6 10 10 C 1.38208 * 119.99554 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99804 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47008 * 270.01729 * 11 10 9 13 13 C 1.50700 * 109.47388 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99520 * 0.02562 * 13 12 11 15 15 C 1.37866 * 120.00290 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00101 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00181 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46667 * 90.00455 * 17 15 13 19 19 H 1.48501 * 109.47268 * 210.00211 * 17 15 13 20 20 H 1.48499 * 109.46786 * 330.00468 * 17 15 13 21 21 C 1.38220 * 119.99654 * 90.00415 * 6 5 2 22 22 H 1.08996 * 109.46846 * 300.00444 * 1 2 3 23 23 H 1.08998 * 109.46690 * 60.00043 * 1 2 3 24 24 H 1.08994 * 109.47040 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47031 * 59.99863 * 5 2 1 26 26 H 1.08996 * 109.47256 * 299.99433 * 5 2 1 27 27 H 1.08005 * 119.99964 * 0.02562 * 7 6 5 28 28 H 1.08000 * 119.99783 * 180.02562 * 8 7 6 29 29 H 1.07992 * 119.99989 * 179.97438 * 9 8 7 30 30 H 1.08990 * 109.47415 * 30.02092 * 11 10 9 31 31 H 1.09006 * 109.46768 * 150.01991 * 11 10 9 32 32 H 1.09000 * 109.47213 * 299.99878 * 12 11 10 33 33 H 1.09000 * 109.47148 * 60.00017 * 12 11 10 34 34 H 0.97005 * 120.00400 * 179.97438 * 16 15 13 35 35 H 1.08000 * 119.99660 * 0.27001 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9965 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7213 1.2493 6 6 3.5470 -0.7218 1.2490 7 6 4.2378 -1.7596 0.6513 8 6 5.6199 -1.7597 0.6506 9 6 6.3117 -0.7224 1.2481 10 6 5.6211 0.3144 1.8466 11 6 6.3751 1.4448 2.4984 12 6 6.6312 1.1063 3.9683 13 6 7.3857 2.2363 4.6200 14 1 7.6553 3.1089 4.0434 15 6 7.7310 2.1567 5.9524 16 7 7.4023 1.0944 6.6545 17 14 8.6670 3.5572 6.7600 18 1 7.7033 4.5360 7.3244 19 1 9.5208 3.0188 7.8493 20 1 9.5208 4.2301 5.7484 21 6 4.2385 0.3147 1.8473 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6766 -1.7489 1.2493 26 1 1.6767 -0.2074 2.1393 27 1 3.6975 -2.5697 0.1842 28 1 6.1595 -2.5702 0.1833 29 1 7.3916 -0.7228 1.2479 30 1 7.3270 1.5888 1.9875 31 1 5.7859 2.3596 2.4335 32 1 5.6791 0.9624 4.4792 33 1 7.2203 0.1915 4.0332 34 1 7.6456 1.0382 7.5919 35 1 3.6988 1.1226 2.3188 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = -107.060718 kcal Electronic energy + Delta-G solvation = -18236.031485 eV Core-core repulsion = 15061.416746 eV Total energy + Delta-G solvation = -3174.614739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.91898 -46.90857 -39.08386 -34.64872 -33.47834 -31.98549 -30.88167 -28.94076 -26.82551 -25.02082 -22.32830 -22.02394 -21.16270 -19.66335 -17.56846 -16.65218 -16.49929 -16.19182 -15.88313 -15.09748 -14.49785 -14.36143 -13.86169 -13.37302 -13.27864 -12.95551 -12.86669 -12.76304 -12.59726 -12.49320 -12.27439 -12.09514 -11.96704 -11.39630 -11.09766 -10.93304 -10.73561 -10.59070 -10.43461 -9.79944 -9.59007 -9.08615 -8.43837 -8.33044 -8.05587 -5.98903 -4.01938 1.66714 1.83799 3.32713 3.38837 3.42466 3.71137 4.00893 4.20307 4.30889 4.41333 4.47941 4.95324 4.99418 5.24449 5.30419 5.35341 5.36694 5.53062 5.55667 5.56379 5.66896 5.87646 6.00195 6.17559 6.40942 6.53466 6.69560 6.83282 6.86894 7.03300 7.16918 7.43823 7.69019 7.83401 8.01096 8.41915 9.05078 9.62125 11.12143 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.031614 B = 0.004380 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.468888 B = 6391.148424 C = 6809.191670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.290 3.710 3 F -0.197 7.197 4 F -0.201 7.201 5 C -0.117 4.117 6 C -0.103 4.103 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.116 4.116 10 C -0.057 4.057 11 C -0.081 4.081 12 C 0.030 3.970 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.102 4.102 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.260 0.740 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 -5.432 -13.011 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.254 3.746 3 F -0.178 7.178 4 F -0.182 7.182 5 C -0.155 4.155 6 C -0.103 4.103 7 C -0.140 4.140 8 C -0.140 4.140 9 C -0.134 4.134 10 C -0.057 4.057 11 C -0.118 4.118 12 C -0.007 4.007 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.120 4.120 22 H 0.108 0.892 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.890 -5.490 -12.864 19.020 hybrid contribution 0.621 0.717 0.485 1.065 sum -12.269 -4.773 -12.378 18.070 Atomic orbital electron populations 1.22781 0.91801 1.05260 1.05339 1.21086 0.93114 0.76113 0.84311 1.93034 1.90578 1.37363 1.96830 1.93005 1.90650 1.80968 1.53556 1.21593 0.94323 1.02713 0.96850 1.19415 0.93410 0.96320 1.01142 1.20810 0.94337 0.98246 1.00639 1.21026 0.94090 0.98562 1.00294 1.21127 1.00011 0.94111 0.98117 1.20355 0.93627 0.96754 0.94915 1.20847 0.97960 0.93951 0.99045 1.19069 0.96946 0.96955 0.87694 1.21267 1.35928 1.03700 0.95125 0.92588 1.25017 0.96088 0.95830 0.97438 1.69975 1.47003 1.28087 1.08353 0.86597 0.79916 0.82375 0.79135 1.20658 1.21226 1.19842 1.20939 0.94024 0.97874 0.99138 0.89164 0.90151 0.89352 0.88277 0.87971 0.86766 0.86513 0.86144 0.92191 0.92209 0.96479 0.96441 0.93007 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 9.38 37.16 0.35 -1.09 16 2 C 0.29 3.29 2.11 -26.73 -0.06 3.23 16 3 F -0.20 -2.79 16.53 2.25 0.04 -2.75 16 4 F -0.20 -2.63 16.53 2.25 0.04 -2.59 16 5 C -0.12 -1.31 4.94 -27.88 -0.14 -1.45 16 6 C -0.10 -1.55 4.74 -104.62 -0.50 -2.05 16 7 C -0.12 -1.78 9.42 -39.59 -0.37 -2.16 16 8 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 9 C -0.12 -2.02 9.70 -39.58 -0.38 -2.40 16 10 C -0.06 -1.08 5.13 -104.63 -0.54 -1.62 16 11 C -0.08 -1.73 5.28 -27.88 -0.15 -1.88 16 12 C 0.03 0.80 4.95 -27.88 -0.14 0.66 16 13 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.10 -1.79 9.08 -39.58 -0.36 -2.15 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 26 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 27 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 31 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -31.88 307.91 -7.68 -39.56 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.03 Total: -2.37 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.09 Total: -26.82 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.07 Total: -5.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.88 -7.68 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.500 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds