Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39900 * 109.47416 * 2 1 4 4 F 1.39902 * 109.47065 * 239.99540 * 2 1 3 5 5 C 1.53005 * 109.46614 * 119.99872 * 2 1 3 6 6 C 1.50706 * 109.46710 * 179.97438 * 5 2 1 7 7 C 1.38253 * 120.00297 * 269.95223 * 6 5 2 8 8 C 1.38205 * 119.99884 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.00475 * 0.02562 * 8 7 6 10 10 C 1.38208 * 119.99554 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99804 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47008 * 270.01729 * 11 10 9 13 13 C 1.50700 * 109.47388 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99520 * 0.02562 * 13 12 11 15 15 C 1.37866 * 120.00290 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00101 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00181 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46667 * 90.00455 * 17 15 13 19 19 H 1.48501 * 109.47268 * 210.00211 * 17 15 13 20 20 H 1.48499 * 109.46786 * 330.00468 * 17 15 13 21 21 C 1.38220 * 119.99654 * 90.00415 * 6 5 2 22 22 H 1.08996 * 109.46846 * 300.00444 * 1 2 3 23 23 H 1.08998 * 109.46690 * 60.00043 * 1 2 3 24 24 H 1.08994 * 109.47040 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47031 * 59.99863 * 5 2 1 26 26 H 1.08996 * 109.47256 * 299.99433 * 5 2 1 27 27 H 1.08005 * 119.99964 * 0.02562 * 7 6 5 28 28 H 1.08000 * 119.99783 * 180.02562 * 8 7 6 29 29 H 1.07992 * 119.99989 * 179.97438 * 9 8 7 30 30 H 1.08990 * 109.47415 * 30.02092 * 11 10 9 31 31 H 1.09006 * 109.46768 * 150.01991 * 11 10 9 32 32 H 1.09000 * 109.47213 * 299.99878 * 12 11 10 33 33 H 1.09000 * 109.47148 * 60.00017 * 12 11 10 34 34 H 0.97005 * 120.00400 * 179.97438 * 16 15 13 35 35 H 1.08000 * 119.99660 * 0.27001 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9965 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7213 1.2493 6 6 3.5470 -0.7218 1.2490 7 6 4.2378 -1.7596 0.6513 8 6 5.6199 -1.7597 0.6506 9 6 6.3117 -0.7224 1.2481 10 6 5.6211 0.3144 1.8466 11 6 6.3751 1.4448 2.4984 12 6 6.6312 1.1063 3.9683 13 6 7.3857 2.2363 4.6200 14 1 7.6553 3.1089 4.0434 15 6 7.7310 2.1567 5.9524 16 7 7.4023 1.0944 6.6545 17 14 8.6670 3.5572 6.7600 18 1 7.7033 4.5360 7.3244 19 1 9.5208 3.0188 7.8493 20 1 9.5208 4.2301 5.7484 21 6 4.2385 0.3147 1.8473 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6766 -1.7489 1.2493 26 1 1.6767 -0.2074 2.1393 27 1 3.6975 -2.5697 0.1842 28 1 6.1595 -2.5702 0.1833 29 1 7.3916 -0.7228 1.2479 30 1 7.3270 1.5888 1.9875 31 1 5.7859 2.3596 2.4335 32 1 5.6791 0.9624 4.4792 33 1 7.2203 0.1915 4.0332 34 1 7.6456 1.0382 7.5919 35 1 3.6988 1.1226 2.3188 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = -123.234961 kcal Electronic energy + Delta-G solvation = -18236.732853 eV Core-core repulsion = 15061.416746 eV Total energy + Delta-G solvation = -3175.316107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.85939 -47.87371 -40.36544 -36.23734 -34.91896 -33.69910 -31.85443 -30.66825 -27.80579 -26.93191 -23.74984 -23.32237 -22.45005 -21.11646 -18.57201 -18.48528 -17.55020 -17.37923 -17.02225 -16.53334 -16.42140 -15.62205 -14.88550 -14.62939 -14.54683 -14.25345 -14.20951 -14.10353 -13.79702 -13.50596 -13.42544 -13.16553 -13.06703 -12.95961 -12.82011 -12.54165 -12.28941 -12.00357 -11.87869 -11.60107 -11.49290 -11.15184 -10.57622 -9.68199 -9.45168 -8.21143 -6.33717 0.41031 0.53092 1.39457 1.41148 1.52508 2.40039 2.74368 3.03883 3.11426 3.32414 3.49137 3.52322 3.96010 4.02131 4.10392 4.27240 4.40056 4.46096 4.63679 4.63856 4.73261 4.76575 4.83009 4.89997 5.00823 5.05711 5.18184 5.25997 5.46278 5.54131 5.58356 5.62461 5.81435 5.89024 6.14216 6.21729 6.82444 7.35842 8.90487 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.031614 B = 0.004380 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.468888 B = 6391.148424 C = 6809.191670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.280 3.720 3 F -0.219 7.219 4 F -0.212 7.212 5 C -0.117 4.117 6 C -0.103 4.103 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.134 4.134 10 C -0.087 4.087 11 C -0.066 4.066 12 C 0.040 3.960 13 C -0.547 4.547 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.121 4.121 22 H 0.102 0.898 23 H 0.082 0.918 24 H 0.111 0.889 25 H 0.131 0.869 26 H 0.111 0.889 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.121 0.879 30 H 0.061 0.939 31 H 0.058 0.942 32 H -0.011 1.011 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 -5.937 -13.766 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.244 3.756 3 F -0.201 7.201 4 F -0.193 7.193 5 C -0.154 4.154 6 C -0.103 4.103 7 C -0.138 4.138 8 C -0.138 4.138 9 C -0.152 4.152 10 C -0.087 4.087 11 C -0.104 4.104 12 C 0.003 3.997 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.791 3.209 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.139 4.139 22 H 0.121 0.879 23 H 0.101 0.899 24 H 0.130 0.870 25 H 0.149 0.851 26 H 0.130 0.870 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.073 0.927 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.947 -5.991 -13.635 20.404 hybrid contribution 0.907 0.794 0.680 1.385 sum -13.039 -5.196 -12.955 19.101 Atomic orbital electron populations 1.22795 0.88358 1.07112 1.06160 1.21574 0.95454 0.74896 0.83704 1.92995 1.91102 1.39083 1.96885 1.92978 1.91055 1.81076 1.54232 1.21736 0.91480 1.04860 0.97357 1.19834 0.95774 0.95212 0.99529 1.21276 0.94323 0.98642 0.99510 1.21398 0.94765 0.98355 0.99245 1.21266 1.00335 0.94653 0.98905 1.20236 0.94470 0.97018 0.97018 1.20563 0.98551 0.95170 0.96097 1.18883 0.94699 0.95366 0.90774 1.21700 1.36415 1.04422 0.95927 0.92079 1.25991 0.96918 0.98674 0.98072 1.70110 1.48084 1.30277 1.08832 0.85418 0.78565 0.78791 0.78100 1.19643 1.20580 1.18715 1.21033 0.93581 0.99015 1.00230 0.87895 0.89858 0.86991 0.85121 0.87025 0.83439 0.83415 0.86090 0.91999 0.92319 0.99250 0.99172 0.92697 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 9.38 71.98 0.68 -1.53 16 2 C 0.28 5.77 2.11 30.60 0.06 5.83 16 3 F -0.22 -6.09 16.53 44.97 0.74 -5.35 16 4 F -0.21 -5.09 16.53 44.97 0.74 -4.35 16 5 C -0.12 -2.34 4.94 29.85 0.15 -2.19 16 6 C -0.10 -2.98 4.74 -19.86 -0.09 -3.08 16 7 C -0.12 -3.20 9.42 22.27 0.21 -2.99 16 8 C -0.12 -3.44 10.05 22.27 0.22 -3.22 16 9 C -0.13 -4.71 9.70 22.27 0.22 -4.49 16 10 C -0.09 -3.47 5.13 -19.87 -0.10 -3.57 16 11 C -0.07 -2.99 5.28 29.85 0.16 -2.83 16 12 C 0.04 2.21 4.95 29.85 0.15 2.36 16 13 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 14 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 15 C 0.00 0.07 5.46 84.65 0.46 0.54 16 16 N -0.93 -57.90 13.29 21.44 0.28 -57.61 16 17 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.12 -4.32 9.08 22.27 0.20 -4.12 16 22 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.13 1.78 8.08 -2.39 -0.02 1.77 16 26 H 0.11 2.03 8.09 -2.39 -0.02 2.01 16 27 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.06 2.68 8.08 -2.39 -0.02 2.66 16 31 H 0.06 2.57 8.09 -2.38 -0.02 2.55 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 35 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -70.68 307.91 7.40 -63.28 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.06 Total: 8.25 kcal Atomic # 6 Polarization: -53.70 SS G_CDS: 2.54 Total: -51.16 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.28 Total: -57.61 kcal Atomic # 9 Polarization: -11.18 SS G_CDS: 1.49 Total: -9.69 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.68 7.40 -63.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.953 kcal (2) G-P(sol) polarization free energy of solvation -70.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds