Wall clock time and date at job start Mon Mar 30 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 C 1.50700 * 109.46782 * 239.99647 * 2 1 3 5 5 H 1.07999 * 119.99723 * 120.81832 * 4 2 1 6 6 C 1.37870 * 120.00331 * 300.81246 * 4 2 1 7 7 N 1.31515 * 120.00206 * 201.27604 * 6 4 2 8 8 Si 1.86804 * 119.99798 * 21.28038 * 6 4 2 9 9 H 1.48498 * 109.47147 * 83.88343 * 8 6 4 10 10 H 1.48507 * 109.46878 * 203.88358 * 8 6 4 11 11 H 1.48502 * 109.47233 * 323.88220 * 8 6 4 12 12 C 1.50699 * 109.46922 * 120.00020 * 2 1 3 13 13 C 1.38257 * 120.00248 * 354.32900 * 12 2 1 14 14 C 1.38211 * 120.00007 * 179.97438 * 13 12 2 15 15 C 1.38254 * 120.00290 * 359.79010 * 14 13 12 16 16 C 1.38223 * 119.99599 * 0.48821 * 15 14 13 17 17 C 1.38217 * 120.00002 * 174.35961 * 12 2 1 18 18 C 1.50702 * 119.99477 * 359.96851 * 17 12 2 19 19 C 1.53010 * 109.46929 * 176.47830 * 18 17 12 20 20 F 1.39893 * 109.47590 * 296.47792 * 18 17 12 21 21 F 1.39901 * 109.46961 * 56.48335 * 18 17 12 22 22 H 1.09003 * 109.47347 * 292.34098 * 1 2 3 23 23 H 1.09001 * 109.47265 * 52.33894 * 1 2 3 24 24 H 1.08997 * 109.47259 * 172.34393 * 1 2 3 25 25 H 1.08994 * 109.46987 * 219.27855 * 3 2 1 26 26 H 1.08999 * 109.46958 * 339.27740 * 3 2 1 27 27 H 1.09003 * 109.47159 * 99.27856 * 3 2 1 28 28 H 0.96999 * 120.00049 * 180.02562 * 7 6 4 29 29 H 1.07996 * 120.00079 * 0.02562 * 13 12 2 30 30 H 1.08007 * 120.00190 * 180.02562 * 14 13 12 31 31 H 1.08004 * 120.00759 * 180.25874 * 15 14 13 32 32 H 1.07998 * 119.99643 * 179.76530 * 16 15 14 33 33 H 1.08996 * 109.46774 * 59.99978 * 19 18 17 34 34 H 1.08994 * 109.47466 * 180.02562 * 19 18 17 35 35 H 1.09010 * 109.46638 * 300.00497 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6640 -0.1896 -1.9347 6 6 1.6854 -2.0255 -1.4571 7 7 2.4172 -2.7701 -2.2568 8 14 0.1758 -2.7494 -0.6283 9 1 -1.0330 -2.4173 -1.4244 10 1 0.3199 -4.2247 -0.5390 11 1 0.0406 -2.1816 0.7372 12 6 2.0323 -0.7104 1.2305 13 6 1.1394 -1.1324 2.1980 14 6 1.6000 -1.7844 3.3262 15 6 2.9533 -2.0185 3.4853 16 6 3.8465 -1.5915 2.5207 17 6 3.3857 -0.9396 1.3921 18 6 4.3589 -0.4796 0.3374 19 6 5.7877 -0.7754 0.7981 20 9 4.1050 -1.1581 -0.8593 21 9 4.2101 0.8965 0.1340 22 1 -0.3634 0.3906 0.9505 23 1 -0.3634 0.6279 -0.8135 24 1 -0.3633 -1.0185 -0.1369 25 1 2.9110 1.5198 -0.6506 26 1 1.2549 2.1054 -0.3636 27 1 2.3173 1.7298 1.0142 28 1 2.1729 -3.6952 -2.4165 29 1 0.0819 -0.9533 2.0718 30 1 0.9025 -2.1145 4.0819 31 1 3.3129 -2.5317 4.3649 32 1 4.9040 -1.7711 2.6468 33 1 5.9036 -1.8475 0.9567 34 1 6.4917 -0.4423 0.0356 35 1 5.9855 -0.2467 1.7306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260449036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:28 Heat of formation + Delta-G solvation = -23.353033 kcal Electronic energy + Delta-G solvation = -20836.578335 eV Core-core repulsion = 17665.593434 eV Total energy + Delta-G solvation = -3170.984902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.62725 -47.36875 -40.59192 -37.16115 -33.96095 -33.75542 -30.73112 -30.15958 -28.20448 -27.05997 -24.83715 -23.70272 -21.59254 -20.61839 -18.92076 -18.33696 -18.12662 -17.10372 -16.88750 -16.04059 -15.52195 -15.26827 -15.05749 -14.74916 -14.72336 -14.29592 -13.87627 -13.67285 -13.55839 -13.42172 -12.98867 -12.91904 -12.79371 -12.60807 -12.59231 -12.33912 -11.90716 -11.77760 -11.27702 -11.00842 -10.88273 -10.54456 -10.10563 -9.65394 -9.23805 -8.11951 -5.89234 0.44598 0.64842 1.34700 1.42700 1.47804 2.46436 2.94766 3.16949 3.24825 3.57043 3.88202 4.13704 4.16579 4.25794 4.28672 4.41034 4.55972 4.65480 4.69405 4.81712 4.84066 4.92638 5.04165 5.10224 5.11499 5.15162 5.16712 5.25830 5.50551 5.62114 5.69905 5.79376 5.82380 6.00774 6.22579 6.48291 6.88868 7.53044 9.03186 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.014749 C = 0.012131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.645991 B = 1898.027238 C = 2307.610742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 C -0.138 4.138 4 C -0.467 4.467 5 H 0.037 0.963 6 C 0.030 3.970 7 N -0.922 5.922 8 Si 0.886 3.114 9 H -0.292 1.292 10 H -0.330 1.330 11 H -0.185 1.185 12 C -0.032 4.032 13 C -0.152 4.152 14 C -0.114 4.114 15 C -0.142 4.142 16 C -0.105 4.105 17 C -0.162 4.162 18 C 0.315 3.685 19 C -0.187 4.187 20 F -0.167 7.167 21 F -0.201 7.201 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.252 0.748 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 3.293 13.364 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.050 3.950 3 C -0.194 4.194 4 C -0.505 4.505 5 H 0.055 0.945 6 C -0.168 4.168 7 N -0.561 5.561 8 Si 0.719 3.281 9 H -0.220 1.220 10 H -0.261 1.261 11 H -0.109 1.109 12 C -0.033 4.033 13 C -0.170 4.170 14 C -0.132 4.132 15 C -0.160 4.160 16 C -0.123 4.123 17 C -0.163 4.163 18 C 0.279 3.721 19 C -0.244 4.244 20 F -0.147 7.147 21 F -0.182 7.182 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.148 0.852 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.439 3.174 13.241 13.833 hybrid contribution -0.905 -0.664 -0.827 1.394 sum 1.534 2.510 12.414 12.757 Atomic orbital electron populations 1.22491 0.97152 0.99796 1.01109 1.17711 0.92780 0.93773 0.90777 1.22638 1.01427 0.94342 1.01018 1.20975 1.27987 0.95863 1.05628 0.94478 1.25383 0.98245 0.96933 0.96268 1.70186 1.37847 1.06956 1.41152 0.87179 0.81892 0.74525 0.84516 1.22038 1.26058 1.10909 1.20474 0.92978 0.95116 0.94716 1.21408 0.99878 1.01119 0.94561 1.21523 0.96785 0.97613 0.97230 1.21372 0.92973 1.01518 1.00130 1.21393 1.01546 0.96806 0.92534 1.20282 0.94503 1.04634 0.96880 1.19715 0.95971 0.73792 0.82598 1.22861 0.92076 1.05092 1.04399 1.93431 1.94701 1.79306 1.47275 1.92832 1.96339 1.33633 1.95404 0.91504 0.92873 0.94920 0.90284 0.94309 0.93835 0.93954 0.85207 0.83432 0.82648 0.83068 0.88932 0.90167 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.16 6.66 71.98 0.48 -5.68 16 2 C 0.05 2.30 0.49 -53.68 -0.03 2.27 16 3 C -0.14 -5.77 7.41 71.98 0.53 -5.24 16 4 C -0.47 -25.95 4.72 25.60 0.12 -25.83 16 5 H 0.04 2.34 6.88 -2.91 -0.02 2.32 16 6 C 0.03 1.72 4.80 84.65 0.41 2.13 16 7 N -0.92 -58.01 13.26 21.44 0.28 -57.73 16 8 Si 0.89 44.16 23.93 68.60 1.64 45.80 16 9 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 10 H -0.33 -17.37 7.11 99.48 0.71 -16.67 16 11 H -0.19 -7.91 2.76 99.48 0.27 -7.64 16 12 C -0.03 -1.36 3.29 -19.87 -0.07 -1.42 16 13 C -0.15 -5.50 6.94 22.27 0.15 -5.34 16 14 C -0.11 -3.34 10.05 22.27 0.22 -3.12 16 15 C -0.14 -3.89 10.05 22.27 0.22 -3.67 16 16 C -0.11 -3.28 8.98 22.27 0.20 -3.08 16 17 C -0.16 -6.46 5.29 -19.87 -0.11 -6.57 16 18 C 0.32 13.03 1.75 29.85 0.05 13.09 16 19 C -0.19 -5.53 8.05 71.99 0.58 -4.95 16 20 F -0.17 -8.88 11.18 44.97 0.50 -8.38 16 21 F -0.20 -8.45 11.33 44.97 0.51 -7.94 16 22 H 0.07 2.31 6.72 -2.39 -0.02 2.30 16 23 H 0.05 2.14 7.95 -2.39 -0.02 2.12 16 24 H 0.03 1.42 1.76 -2.39 0.00 1.41 16 25 H 0.08 3.60 4.71 -2.39 -0.01 3.59 16 26 H 0.04 1.48 7.59 -2.39 -0.02 1.46 16 27 H 0.04 1.68 7.40 -2.39 -0.02 1.66 16 28 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.13 4.42 5.17 -2.91 -0.02 4.41 16 30 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.15 3.68 5.90 -2.91 -0.02 3.66 16 33 H 0.09 2.54 7.34 -2.39 -0.02 2.52 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.11 2.48 7.68 -2.38 -0.02 2.46 16 Total: -1.00 -69.31 256.83 6.39 -62.92 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.68 Total: 12.74 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 2.78 Total: -47.42 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.28 Total: -57.73 kcal Atomic # 9 Polarization: -17.33 SS G_CDS: 1.01 Total: -16.32 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.64 Total: 45.80 kcal Total: -69.31 6.39 -62.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260449036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.568 kcal (2) G-P(sol) polarization free energy of solvation -69.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds