Wall clock time and date at job start Mon Mar 30 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47353 * 2 1 4 4 C 1.42894 * 114.00259 * 175.55142 * 3 2 1 5 5 H 1.08999 * 109.46993 * 31.00498 * 4 3 2 6 6 C 1.50697 * 109.47242 * 151.00356 * 4 3 2 7 7 N 1.29952 * 126.28538 * 45.02327 * 6 4 3 8 8 O 1.21300 * 110.24729 * 180.02562 * 7 6 4 9 9 C 1.33646 * 109.81633 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.55368 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47294 * 270.02975 * 10 9 8 12 12 H 1.07999 * 120.00273 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00104 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00505 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99905 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47411 * 89.99613 * 15 13 11 17 17 H 1.48504 * 109.47034 * 210.00223 * 15 13 11 18 18 H 1.48500 * 109.46746 * 329.99538 * 15 13 11 19 19 N 1.31127 * 106.89438 * 0.22862 * 9 8 7 20 20 C 1.52996 * 109.47217 * 271.00205 * 4 3 2 21 21 C 1.52998 * 109.47427 * 178.82135 * 20 4 3 22 22 C 1.53002 * 109.47188 * 298.82551 * 20 4 3 23 23 H 1.08997 * 109.47558 * 299.99811 * 1 2 3 24 24 H 1.09007 * 109.47079 * 60.00151 * 1 2 3 25 25 H 1.08998 * 109.47310 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47264 * 239.99756 * 2 1 3 27 27 H 1.08998 * 109.47160 * 120.00083 * 2 1 3 28 28 H 1.08995 * 109.46901 * 150.02304 * 10 9 8 29 29 H 1.09005 * 109.47016 * 30.03065 * 10 9 8 30 30 H 0.96999 * 120.00534 * 179.97438 * 14 13 11 31 31 H 1.09004 * 109.46959 * 58.82300 * 20 4 3 32 32 H 1.09004 * 109.46916 * 60.00138 * 21 20 4 33 33 H 1.09001 * 109.47203 * 180.02562 * 21 20 4 34 34 H 1.09004 * 109.47373 * 300.00325 * 21 20 4 35 35 H 1.09005 * 109.46677 * 173.85729 * 22 20 4 36 36 H 1.08998 * 109.46921 * 293.85660 * 22 20 4 37 37 H 1.08995 * 109.47006 * 53.86020 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4271 1.4614 0.1013 5 1 3.8956 0.5990 -0.3730 6 6 3.8803 2.7220 -0.5890 7 7 3.3341 3.8963 -0.4820 8 8 3.9331 4.7015 -1.1633 9 6 4.9487 4.0991 -1.7891 10 6 5.9344 4.7452 -2.7282 11 6 5.4107 4.6652 -4.1390 12 1 4.4594 4.1933 -4.3360 13 6 6.1459 5.1945 -5.1784 14 7 5.6892 5.1243 -6.4096 15 14 7.7916 6.0102 -4.8378 16 1 8.8729 4.9956 -4.9178 17 1 8.0349 7.0736 -5.8454 18 1 7.7750 6.6099 -3.4794 19 7 4.9204 2.8371 -1.4340 20 6 3.8307 1.5143 1.5761 21 6 5.3540 1.6069 1.6850 22 6 3.1967 2.7412 2.2347 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 6.8904 4.2254 -2.6655 29 1 6.0701 5.7903 -2.4498 30 1 6.2063 5.4970 -7.1408 31 1 3.4846 0.6119 2.0800 32 1 5.7001 2.5094 1.1811 33 1 5.6415 1.6442 2.7358 34 1 5.8057 0.7329 1.2158 35 1 3.3934 2.7204 3.3066 36 1 3.6247 3.6465 1.8042 37 1 2.1205 2.7306 2.0624 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300050935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:48 Heat of formation + Delta-G solvation = 5.699032 kcal Electronic energy + Delta-G solvation = -19186.005820 eV Core-core repulsion = 16159.660977 eV Total energy + Delta-G solvation = -3026.344843 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.85632 -38.93681 -35.68986 -34.70216 -33.53997 -31.94865 -31.18494 -29.02027 -27.22981 -26.70120 -23.88133 -23.08092 -22.71653 -21.31075 -19.53592 -17.71933 -16.97367 -16.69953 -16.53762 -15.79640 -15.40339 -14.65045 -14.17505 -14.00360 -13.62456 -13.30551 -12.70890 -12.47879 -12.33314 -12.32135 -12.15466 -12.05718 -11.61828 -11.38293 -11.32779 -11.14542 -10.97540 -10.78900 -10.76470 -10.64952 -10.30492 -10.25193 -9.68721 -9.59715 -8.98805 -8.75097 -6.23373 -4.27638 1.90383 2.80253 3.20574 3.27636 3.28626 3.41824 3.72161 4.21849 4.26366 4.67071 4.71849 4.90145 4.96300 5.05371 5.10105 5.13423 5.23301 5.36662 5.52838 5.58508 5.66575 5.78401 5.84737 5.89163 5.96694 6.00703 6.01264 6.24773 6.36723 6.44591 6.54966 6.62645 6.84252 7.10390 7.33039 8.24255 8.76583 8.89247 9.30655 10.88853 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.028620 B = 0.005213 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.118307 B = 5369.918539 C = 5882.191730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.192 3.808 5 H 0.087 0.913 6 C 0.163 3.837 7 N -0.377 5.377 8 O 0.065 5.935 9 C 0.240 3.760 10 C 0.070 3.930 11 C -0.528 4.528 12 H 0.077 0.923 13 C 0.079 3.921 14 N -0.888 5.888 15 Si 0.878 3.122 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.261 1.261 19 N -0.497 5.497 20 C -0.110 4.110 21 C -0.145 4.145 22 C -0.142 4.142 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.269 0.731 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 -8.215 15.457 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.288 6.288 4 C 0.132 3.868 5 H 0.105 0.895 6 C -0.111 4.111 7 N -0.088 5.088 8 O 0.009 5.991 9 C 0.021 3.979 10 C 0.031 3.969 11 C -0.566 4.566 12 H 0.095 0.905 13 C -0.124 4.124 14 N -0.525 5.525 15 Si 0.704 3.296 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.186 1.186 19 N -0.232 5.232 20 C -0.130 4.130 21 C -0.202 4.202 22 C -0.200 4.200 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.047 -8.283 15.746 18.246 hybrid contribution 1.009 0.226 -0.234 1.060 sum -3.038 -8.057 15.512 17.742 Atomic orbital electron populations 1.21726 0.93543 1.02110 1.03322 1.22560 0.95779 0.83584 1.00207 1.87998 1.19714 1.26555 1.94505 1.19966 0.82028 0.91198 0.93563 0.89466 1.25149 0.92743 0.95090 0.98082 1.74574 1.18429 1.01352 1.14423 1.85290 1.34038 1.35913 1.43909 1.29423 0.89460 0.86822 0.92151 1.18552 0.90562 0.96214 0.91569 1.20629 1.08164 1.40483 0.87359 0.90473 1.24860 0.97913 0.95018 0.94653 1.69865 1.38671 1.44717 0.99208 0.86810 0.84044 0.79849 0.78936 1.19684 1.20736 1.18585 1.71882 1.20339 1.16510 1.14420 1.21558 0.96769 1.00260 0.94374 1.21781 0.94112 1.02655 1.01668 1.21774 1.01709 0.97330 0.99148 0.91856 0.91685 0.91093 0.93062 0.93208 0.91972 0.92509 0.92079 0.90154 0.92436 0.92252 0.92209 0.93087 0.92201 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.06 0.63 6.44 37.16 0.24 0.86 16 3 O -0.37 -5.72 9.25 -35.23 -0.33 -6.05 16 4 C 0.19 2.97 2.48 -27.89 -0.07 2.90 16 5 H 0.09 1.26 7.84 -51.93 -0.41 0.85 16 6 C 0.16 3.17 5.33 -156.37 -0.83 2.33 16 7 N -0.38 -7.78 10.52 30.90 0.33 -7.46 16 8 O 0.07 1.41 11.31 18.09 0.20 1.62 16 9 C 0.24 5.30 7.70 -13.05 -0.10 5.20 16 10 C 0.07 1.59 4.67 -29.04 -0.14 1.46 16 11 C -0.53 -14.47 9.65 -34.44 -0.33 -14.81 16 12 H 0.08 2.37 7.98 -52.49 -0.42 1.95 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 15 Si 0.88 19.83 27.47 -169.99 -4.67 15.16 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 19 N -0.50 -10.66 11.55 -9.87 -0.11 -10.78 16 20 C -0.11 -1.40 2.90 -90.62 -0.26 -1.66 16 21 C -0.14 -1.78 8.96 37.16 0.33 -1.44 16 22 C -0.14 -1.90 8.52 37.16 0.32 -1.59 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.46 7.69 -51.93 -0.40 0.06 16 28 H 0.06 1.35 7.57 -51.93 -0.39 0.95 16 29 H 0.06 1.20 7.20 -51.93 -0.37 0.83 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 32 H 0.06 0.84 7.25 -51.93 -0.38 0.47 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.93 6.47 -51.93 -0.34 0.60 16 37 H 0.06 0.92 7.54 -51.93 -0.39 0.53 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -30.35 309.75 -5.32 -35.67 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.62 Total: -1.72 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.56 Total: -5.72 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.98 Total: -43.63 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.12 Total: -4.43 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.35 -5.32 -35.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300050935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.369 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds