Wall clock time and date at job start Mon Mar 30 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47353 * 2 1 4 4 C 1.42894 * 114.00259 * 175.55142 * 3 2 1 5 5 H 1.08999 * 109.46993 * 31.00498 * 4 3 2 6 6 C 1.50697 * 109.47242 * 151.00356 * 4 3 2 7 7 N 1.29952 * 126.28538 * 45.02327 * 6 4 3 8 8 O 1.21300 * 110.24729 * 180.02562 * 7 6 4 9 9 C 1.33646 * 109.81633 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.55368 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47294 * 270.02975 * 10 9 8 12 12 H 1.07999 * 120.00273 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00104 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00505 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99905 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47411 * 89.99613 * 15 13 11 17 17 H 1.48504 * 109.47034 * 210.00223 * 15 13 11 18 18 H 1.48500 * 109.46746 * 329.99538 * 15 13 11 19 19 N 1.31127 * 106.89438 * 0.22862 * 9 8 7 20 20 C 1.52996 * 109.47217 * 271.00205 * 4 3 2 21 21 C 1.52998 * 109.47427 * 178.82135 * 20 4 3 22 22 C 1.53002 * 109.47188 * 298.82551 * 20 4 3 23 23 H 1.08997 * 109.47558 * 299.99811 * 1 2 3 24 24 H 1.09007 * 109.47079 * 60.00151 * 1 2 3 25 25 H 1.08998 * 109.47310 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47264 * 239.99756 * 2 1 3 27 27 H 1.08998 * 109.47160 * 120.00083 * 2 1 3 28 28 H 1.08995 * 109.46901 * 150.02304 * 10 9 8 29 29 H 1.09005 * 109.47016 * 30.03065 * 10 9 8 30 30 H 0.96999 * 120.00534 * 179.97438 * 14 13 11 31 31 H 1.09004 * 109.46959 * 58.82300 * 20 4 3 32 32 H 1.09004 * 109.46916 * 60.00138 * 21 20 4 33 33 H 1.09001 * 109.47203 * 180.02562 * 21 20 4 34 34 H 1.09004 * 109.47373 * 300.00325 * 21 20 4 35 35 H 1.09005 * 109.46677 * 173.85729 * 22 20 4 36 36 H 1.08998 * 109.46921 * 293.85660 * 22 20 4 37 37 H 1.08995 * 109.47006 * 53.86020 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4271 1.4614 0.1013 5 1 3.8956 0.5990 -0.3730 6 6 3.8803 2.7220 -0.5890 7 7 3.3341 3.8963 -0.4820 8 8 3.9331 4.7015 -1.1633 9 6 4.9487 4.0991 -1.7891 10 6 5.9344 4.7452 -2.7282 11 6 5.4107 4.6652 -4.1390 12 1 4.4594 4.1933 -4.3360 13 6 6.1459 5.1945 -5.1784 14 7 5.6892 5.1243 -6.4096 15 14 7.7916 6.0102 -4.8378 16 1 8.8729 4.9956 -4.9178 17 1 8.0349 7.0736 -5.8454 18 1 7.7750 6.6099 -3.4794 19 7 4.9204 2.8371 -1.4340 20 6 3.8307 1.5143 1.5761 21 6 5.3540 1.6069 1.6850 22 6 3.1967 2.7412 2.2347 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 6.8904 4.2254 -2.6655 29 1 6.0701 5.7903 -2.4498 30 1 6.2063 5.4970 -7.1408 31 1 3.4846 0.6119 2.0800 32 1 5.7001 2.5094 1.1811 33 1 5.6415 1.6442 2.7358 34 1 5.8057 0.7329 1.2158 35 1 3.3934 2.7204 3.3066 36 1 3.6247 3.6465 1.8042 37 1 2.1205 2.7306 2.0624 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300050935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:48 Heat of formation + Delta-G solvation = -15.726448 kcal Electronic energy + Delta-G solvation = -19186.934899 eV Core-core repulsion = 16159.660977 eV Total energy + Delta-G solvation = -3027.273922 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.49272 -40.05538 -37.03457 -36.19334 -35.30927 -33.74158 -32.12950 -30.86439 -28.33384 -27.84627 -25.77823 -24.49328 -23.75514 -22.84069 -20.79809 -19.50892 -18.69907 -18.36385 -17.75412 -16.86303 -16.63834 -16.48445 -15.53911 -15.20821 -14.96877 -14.53722 -14.29630 -14.14782 -13.43045 -13.35827 -13.24289 -13.17799 -13.08703 -12.88096 -12.65682 -12.46904 -12.33217 -12.08796 -12.03331 -11.94123 -11.85112 -11.77131 -11.74154 -10.83657 -10.75986 -10.58800 -8.34801 -6.47057 0.23611 1.22221 1.44721 1.46431 1.57217 1.99247 2.22891 2.35380 2.92820 2.99177 3.30230 3.58573 3.77888 4.06555 4.10521 4.16494 4.30210 4.35304 4.44738 4.59744 4.67305 4.68904 4.79872 4.81946 4.86032 4.91261 4.94863 4.99446 5.05842 5.10586 5.22575 5.30285 5.32116 5.37143 6.07313 6.08243 6.55412 7.16160 7.23265 8.81668 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.028620 B = 0.005213 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.118307 B = 5369.918539 C = 5882.191730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.395 6.395 4 C 0.188 3.812 5 H 0.097 0.903 6 C 0.169 3.831 7 N -0.387 5.387 8 O 0.053 5.947 9 C 0.228 3.772 10 C 0.076 3.924 11 C -0.541 4.541 12 H 0.022 0.978 13 C 0.020 3.980 14 N -0.941 5.941 15 Si 0.955 3.045 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.229 1.229 19 N -0.508 5.508 20 C -0.103 4.103 21 C -0.142 4.142 22 C -0.138 4.138 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.274 0.726 31 H 0.114 0.886 32 H 0.026 0.974 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -9.038 17.787 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.314 6.314 4 C 0.128 3.872 5 H 0.115 0.885 6 C -0.105 4.105 7 N -0.101 5.101 8 O -0.001 6.001 9 C 0.009 3.991 10 C 0.037 3.963 11 C -0.579 4.579 12 H 0.040 0.960 13 C -0.179 4.179 14 N -0.580 5.580 15 Si 0.776 3.224 16 H -0.185 1.185 17 H -0.207 1.207 18 H -0.152 1.152 19 N -0.243 5.243 20 C -0.122 4.122 21 C -0.199 4.199 22 C -0.196 4.196 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.715 -9.101 18.093 20.434 hybrid contribution 0.434 0.373 -0.971 1.127 sum -2.281 -8.728 17.122 19.353 Atomic orbital electron populations 1.21758 0.92583 1.03670 1.02446 1.22865 0.96590 0.81934 1.01571 1.87970 1.19455 1.29245 1.94765 1.20279 0.82483 0.89312 0.95116 0.88542 1.25955 0.91514 0.96158 0.96859 1.74567 1.18724 1.01898 1.14877 1.85268 1.34091 1.36434 1.44277 1.29357 0.89813 0.87312 0.92649 1.18454 0.91100 0.97942 0.88802 1.20751 1.06456 1.40319 0.90421 0.95970 1.25928 1.02680 0.95403 0.93892 1.70028 1.40990 1.46258 1.00704 0.85601 0.77724 0.78772 0.80332 1.18516 1.20658 1.15178 1.71874 1.21303 1.16221 1.14872 1.21595 0.97010 1.01309 0.92309 1.21774 0.93702 1.01526 1.02929 1.21731 1.00760 0.96451 1.00633 0.91754 0.93530 0.88293 0.93068 0.90381 0.90104 0.90153 0.91739 0.86773 0.95434 0.89909 0.91311 0.90536 0.95004 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 0.95 6.44 71.98 0.46 1.42 16 3 O -0.40 -11.85 9.25 -148.98 -1.38 -13.23 16 4 C 0.19 5.57 2.48 29.85 0.07 5.65 16 5 H 0.10 2.63 7.84 -2.39 -0.02 2.62 16 6 C 0.17 6.59 5.33 138.46 0.74 7.32 16 7 N -0.39 -16.28 10.52 -60.30 -0.63 -16.91 16 8 O 0.05 2.33 11.31 74.81 0.85 3.18 16 9 C 0.23 10.18 7.70 88.38 0.68 10.86 16 10 C 0.08 3.41 4.67 29.10 0.14 3.55 16 11 C -0.54 -30.49 9.65 25.60 0.25 -30.24 16 12 H 0.02 1.44 7.98 -2.91 -0.02 1.42 16 13 C 0.02 1.11 5.47 84.65 0.46 1.57 16 14 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 15 Si 0.96 39.97 27.47 68.60 1.88 41.85 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.23 -8.36 6.54 99.48 0.65 -7.71 16 19 N -0.51 -21.92 11.55 -303.19 -3.50 -25.42 16 20 C -0.10 -2.35 2.90 -10.79 -0.03 -2.38 16 21 C -0.14 -3.13 8.96 71.98 0.65 -2.49 16 22 C -0.14 -3.47 8.52 71.98 0.61 -2.86 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.17 7.69 -2.39 -0.02 1.15 16 28 H 0.08 3.35 7.57 -2.39 -0.02 3.33 16 29 H 0.08 3.23 7.20 -2.38 -0.02 3.22 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 31 H 0.11 1.89 7.71 -2.38 -0.02 1.87 16 32 H 0.03 0.76 7.25 -2.38 -0.02 0.75 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.03 0.96 6.47 -2.39 -0.02 0.95 16 37 H 0.05 1.46 7.54 -2.39 -0.02 1.44 16 Total: -1.00 -68.78 309.75 3.28 -65.51 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.99 Total: 11.37 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.77 Total: -9.49 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -3.84 Total: -99.18 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.53 Total: -10.05 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.88 Total: 41.85 kcal Total: -68.78 3.28 -65.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300050935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.780 kcal (2) G-P(sol) polarization free energy of solvation -68.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds