Wall clock time and date at job start Mon Mar 30 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 16 16 C 1.52994 * 109.47012 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46919 * 180.02562 * 16 15 14 18 18 N 1.29025 * 124.91759 * 89.69922 * 17 16 15 19 19 C 1.31780 * 117.12655 * 179.81366 * 18 17 16 20 20 C 1.33641 * 114.49795 * 0.47102 * 19 18 17 21 21 S 1.70980 * 124.91404 * 270.00248 * 17 16 15 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 27 27 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 28 28 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 29 29 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 30 30 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 31 31 H 1.09001 * 109.47146 * 300.00243 * 15 14 13 32 32 H 1.08998 * 109.46587 * 60.00003 * 15 14 13 33 33 H 1.09001 * 109.47363 * 300.00110 * 16 15 14 34 34 H 1.09007 * 109.47271 * 60.00569 * 16 15 14 35 35 H 1.08001 * 122.75084 * 180.22214 * 19 18 17 36 36 H 1.08003 * 126.03871 * 179.71568 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4208 -4.7691 16 6 3.1753 -0.3348 -5.9966 17 6 3.2409 0.6044 -7.1734 18 7 4.2649 1.3235 -7.4882 19 6 4.1555 2.0906 -8.5541 20 6 2.9700 2.0218 -9.1672 21 16 1.9665 0.8767 -8.2803 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7089 1.1611 3.4845 26 1 2.9172 -1.1204 -1.0288 27 1 1.0871 0.6165 -2.5525 28 1 2.7588 1.0464 -2.1181 29 1 3.5917 -0.9260 -3.3683 30 1 1.9201 -1.3564 -3.8032 31 1 1.6669 0.8145 -4.9752 32 1 3.3384 1.2443 -4.5399 33 1 4.1705 -0.7289 -5.7908 34 1 2.4986 -1.1581 -6.2256 35 1 4.9568 2.7260 -8.9014 36 1 2.6782 2.5714 -10.0499 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308888746.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:14 Heat of formation + Delta-G solvation = 23.389009 kcal Electronic energy + Delta-G solvation = -15702.057574 eV Core-core repulsion = 13119.232697 eV Total energy + Delta-G solvation = -2582.824877 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85736 -36.64814 -34.90468 -32.65241 -30.92308 -29.01954 -27.16169 -25.26239 -24.53381 -22.47126 -20.86183 -20.09343 -19.66605 -18.14483 -16.43590 -15.80965 -15.52254 -14.91664 -14.74116 -14.27947 -13.85168 -13.69506 -13.56090 -12.82023 -12.44743 -12.25893 -11.73305 -11.63131 -11.33905 -11.31378 -10.93257 -10.76381 -10.66958 -10.46560 -10.15555 -10.06937 -9.89440 -9.76597 -9.60217 -9.07803 -8.79845 -8.45050 -7.22611 -6.00532 -4.07029 0.48978 1.14783 1.53809 2.62847 3.32537 3.36738 3.39605 3.93279 4.41675 4.73362 4.90250 4.96506 4.99731 5.24408 5.29389 5.35956 5.44025 5.59921 5.82305 5.87227 5.93069 6.02648 6.16947 6.25191 6.57221 6.62790 6.92059 7.17060 7.26961 7.53783 7.54295 7.80231 7.93203 8.30376 8.42938 8.71526 9.04120 9.58812 11.05857 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.055367 B = 0.002951 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.591814 B = 9485.953762 C = 9627.047314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.691 5.691 13 C 0.060 3.940 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.046 4.046 17 C 0.063 3.937 18 N -0.479 5.479 19 C 0.040 3.960 20 C -0.269 4.269 21 S 0.116 5.884 22 H 0.080 0.920 23 H 0.003 0.997 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.062 0.938 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.174 0.826 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 0.911 -22.066 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.322 5.322 13 C -0.070 4.070 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.087 4.087 17 C -0.215 4.215 18 N -0.193 5.193 19 C -0.111 4.111 20 C -0.408 4.408 21 S 0.370 5.630 22 H 0.098 0.902 23 H 0.022 0.978 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.146 0.854 27 H 0.080 0.920 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.191 0.809 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.595 0.385 -21.872 21.934 hybrid contribution 1.748 0.872 0.640 2.056 sum 3.343 1.257 -21.232 21.531 Atomic orbital electron populations 1.21712 0.97955 0.99285 0.99287 1.19093 0.92596 0.92304 0.85687 0.98266 1.21250 1.31484 1.12506 0.90533 0.92267 1.24932 0.95066 0.95004 0.99056 1.69893 1.36644 1.22890 1.23538 0.86576 0.79069 0.79784 0.82056 1.21308 1.20176 1.20333 1.60727 1.31980 1.33278 1.06173 1.21883 0.99585 0.94181 0.91339 1.21568 1.01548 0.98320 0.93770 1.21567 1.01426 0.98868 0.93160 1.20399 1.04149 0.94883 0.89260 1.27309 0.91880 1.00952 1.01347 1.66301 1.28771 1.08053 1.16183 1.21838 0.97590 0.99629 0.92052 1.27069 0.98155 1.07732 1.07849 1.84107 1.19558 1.37757 1.21555 0.90164 0.97764 0.94991 0.92886 0.85380 0.91990 0.96477 0.92118 0.91191 0.91706 0.91409 0.88625 0.89423 0.80860 0.80716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 2 C 0.21 5.46 2.60 -68.87 -0.18 5.29 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.48 8.59 -34.44 -0.30 -14.78 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.82 11.32 55.43 0.63 -25.20 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.69 -14.97 6.30 -107.95 -0.68 -15.65 16 13 C 0.06 1.09 5.48 -3.82 -0.02 1.06 16 14 C -0.11 -1.56 5.47 -26.73 -0.15 -1.71 16 15 C -0.11 -1.30 5.20 -26.73 -0.14 -1.44 16 16 C -0.05 -0.47 5.80 -27.88 -0.16 -0.63 16 17 C 0.06 0.70 6.64 -13.45 -0.09 0.61 16 18 N -0.48 -5.88 10.54 -11.86 -0.13 -6.01 16 19 C 0.04 0.39 11.35 -19.18 -0.22 0.17 16 20 C -0.27 -2.26 11.37 29.12 0.33 -1.92 16 21 S 0.12 1.06 23.18 -107.50 -2.49 -1.43 16 22 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.33 6.93 8.22 -39.30 -0.32 6.60 16 27 H 0.06 1.14 7.44 -51.93 -0.39 0.76 16 28 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -30.34 313.27 -9.22 -39.56 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.57 Total: 2.12 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.67 Total: -14.54 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.18 Total: -46.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.34 -9.22 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308888746.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.948 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds