Wall clock time and date at job start Mon Mar 30 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47268 * 2 1 4 4 C 1.53000 * 109.47345 * 120.00301 * 2 1 3 5 5 C 1.50700 * 109.47600 * 175.00026 * 4 2 1 6 6 N 1.29027 * 124.91685 * 89.97037 * 5 4 2 7 7 C 1.31779 * 117.12535 * 180.02562 * 6 5 4 8 8 C 1.33640 * 114.50004 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.03640 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47066 * 90.02577 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47043 * 89.99858 * 16 14 12 18 18 H 1.48494 * 109.47326 * 209.99769 * 16 14 12 19 19 H 1.48497 * 109.47436 * 330.00047 * 16 14 12 20 20 S 1.70972 * 124.91490 * 270.29093 * 5 4 2 21 21 H 1.08995 * 109.47169 * 299.99852 * 1 2 3 22 22 H 1.09003 * 109.46962 * 59.99858 * 1 2 3 23 23 H 1.09001 * 109.46750 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47450 * 239.99844 * 2 1 3 25 25 H 1.09002 * 109.46840 * 60.00340 * 3 2 1 26 26 H 1.08998 * 109.47116 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47246 * 299.99969 * 3 2 1 28 28 H 1.08997 * 109.47223 * 54.99332 * 4 2 1 29 29 H 1.09011 * 109.46878 * 295.00442 * 4 2 1 30 30 H 1.07999 * 122.74763 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.47558 * 330.02740 * 9 8 7 32 32 H 1.08998 * 109.47216 * 210.02402 * 9 8 7 33 33 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 34 34 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 35 35 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 36 36 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1889 6 7 4.3649 0.0459 1.6593 7 6 5.6514 -0.2043 1.5221 8 6 5.9292 -1.3546 0.9011 9 6 7.3054 -1.8937 0.6073 10 7 7.7550 -2.7269 1.7306 11 6 9.0964 -3.2704 1.4791 12 6 9.5225 -4.1181 2.6498 13 1 8.8630 -4.2406 3.4963 14 6 10.7548 -4.7366 2.6409 15 7 11.5581 -4.5870 1.6103 16 14 11.2833 -5.7869 4.0924 17 1 10.8539 -7.1910 3.8698 18 1 12.7612 -5.7368 4.2276 19 1 10.6548 -5.2680 5.3337 20 16 4.4020 -2.1262 0.4804 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6054 -1.7198 1.2951 29 1 1.7516 -0.1584 2.1370 30 1 6.4185 0.4653 1.8822 31 1 7.9990 -1.0641 0.4700 32 1 7.2738 -2.4950 -0.3012 33 1 7.0946 -3.4660 1.9195 34 1 9.0776 -3.8812 0.5764 35 1 9.8020 -2.4501 1.3481 36 1 12.4248 -5.0224 1.6039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308985488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:26 Heat of formation + Delta-G solvation = 19.930338 kcal Electronic energy + Delta-G solvation = -15825.250398 eV Core-core repulsion = 13242.275542 eV Total energy + Delta-G solvation = -2582.974856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65579 -36.67102 -35.44337 -32.70496 -30.90129 -28.69740 -27.34406 -26.38993 -24.34699 -22.96604 -21.45274 -20.55181 -19.27350 -17.76872 -16.53421 -15.52158 -15.11330 -14.97389 -14.61903 -14.24542 -13.99558 -13.70625 -13.44987 -12.98775 -12.71225 -12.47584 -12.11852 -11.97957 -11.80236 -11.33183 -11.28302 -11.11729 -10.97187 -10.91894 -10.72503 -10.71889 -10.03802 -9.47621 -9.26724 -9.08064 -8.59005 -8.51322 -7.42171 -6.07359 -4.09589 0.87632 1.48053 1.91908 3.01702 3.30089 3.36216 3.41257 4.14432 4.40595 4.62264 4.68405 4.81922 5.14554 5.26206 5.28745 5.35757 5.38218 5.39708 5.45801 5.57732 5.62624 5.67695 5.74514 5.89420 6.04672 6.07519 6.14020 6.18740 6.40166 7.12854 7.32145 7.71662 7.89760 8.05010 8.26919 8.49939 8.98981 9.55497 11.03749 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.054906 B = 0.003491 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.844159 B = 8019.417630 C = 8136.374561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.037 4.037 5 C 0.039 3.961 6 N -0.467 5.467 7 C 0.040 3.960 8 C -0.192 4.192 9 C 0.131 3.869 10 N -0.683 5.683 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.272 1.272 20 S 0.103 5.897 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.330 0.670 34 H -0.012 1.012 35 H 0.031 0.969 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.954 8.124 -4.781 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.078 4.078 5 C -0.239 4.239 6 N -0.182 5.182 7 C -0.111 4.111 8 C -0.313 4.313 9 C -0.001 4.001 10 N -0.314 5.314 11 C 0.067 3.933 12 C -0.554 4.554 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 S 0.357 5.643 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.192 0.808 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.147 0.853 34 H 0.006 0.994 35 H 0.049 0.951 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.018 8.167 -4.721 22.129 hybrid contribution 1.020 -0.714 0.403 1.308 sum -18.998 7.453 -4.319 20.860 Atomic orbital electron populations 1.21831 0.94564 1.01868 1.02076 1.21113 0.95766 0.97022 0.97153 1.21831 1.01991 0.95114 1.01360 1.20335 0.85490 1.01941 1.00047 1.26827 1.00753 0.94215 1.02143 1.66264 1.02475 1.29839 1.19577 1.21662 0.91986 0.96982 1.00461 1.26120 0.99089 0.99317 1.06794 1.20314 0.88003 0.98207 0.93544 1.60779 1.06263 1.26665 1.37677 1.19603 0.83658 0.94142 0.95859 1.21154 1.01749 1.28835 1.03661 0.91903 1.24990 0.96436 0.96756 0.96354 1.69962 1.09734 1.44107 1.29895 0.86457 0.77652 0.80399 0.82682 1.20679 1.21180 1.19717 1.83937 0.98863 1.25589 1.55901 0.92414 0.92413 0.92535 0.91056 0.92503 0.92026 0.93075 0.89889 0.88999 0.80778 0.89419 0.94915 0.85338 0.99383 0.95107 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 2 C -0.09 -0.77 2.91 -90.62 -0.26 -1.03 16 3 C -0.15 -1.36 8.99 37.16 0.33 -1.03 16 4 C -0.04 -0.36 5.27 -27.88 -0.15 -0.50 16 5 C 0.04 0.50 5.88 -13.46 -0.08 0.42 16 6 N -0.47 -6.96 9.78 -11.87 -0.12 -7.07 16 7 C 0.04 0.61 11.25 -19.19 -0.22 0.40 16 8 C -0.19 -3.02 6.11 -35.92 -0.22 -3.24 16 9 C 0.13 2.33 6.22 -4.97 -0.03 2.30 16 10 N -0.68 -14.72 6.48 -116.34 -0.75 -15.47 16 11 C 0.19 5.04 5.44 -4.98 -0.03 5.01 16 12 C -0.52 -14.62 9.32 -34.44 -0.32 -14.94 16 13 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 16 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 S 0.10 1.38 23.18 -107.50 -2.49 -1.11 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.71 6.80 -51.93 -0.35 0.36 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.18 2.51 8.06 -52.49 -0.42 2.09 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.33 6.94 8.72 -39.29 -0.34 6.60 16 34 H -0.01 -0.32 8.14 -51.93 -0.42 -0.74 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -30.22 317.02 -9.33 -39.55 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.74 Total: 0.37 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.73 Total: -11.74 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.13 Total: -48.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.49 Total: -1.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.22 -9.33 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308985488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.479 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds