Wall clock time and date at job start Mon Mar 30 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 C 1.53001 * 109.46900 * 119.99721 * 2 1 3 5 5 H 1.08997 * 109.49738 * 300.05519 * 4 2 1 6 6 C 1.53205 * 109.49365 * 180.02562 * 4 2 1 7 7 C 1.52582 * 109.20349 * 183.33560 * 6 4 2 8 8 C 1.53969 * 110.12482 * 293.81475 * 7 6 4 9 9 C 1.54617 * 103.91904 * 264.35462 * 8 7 6 10 10 C 1.54519 * 104.17639 * 0.29602 * 9 8 7 11 11 H 1.08999 * 110.35481 * 95.13124 * 10 9 8 12 12 C 1.50709 * 110.35161 * 217.41912 * 10 9 8 13 13 H 1.07998 * 119.99708 * 0.02562 * 12 10 9 14 14 C 1.37876 * 119.99816 * 179.97438 * 12 10 9 15 15 N 1.31519 * 119.99733 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99859 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47170 * 60.00078 * 16 14 12 18 18 H 1.48505 * 109.46885 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47161 * 299.99825 * 16 14 12 20 20 O 1.43812 * 110.30253 * 177.77804 * 7 6 4 21 21 C 1.52584 * 110.37987 * 55.61783 * 7 6 4 22 22 C 1.53210 * 109.19958 * 304.38654 * 21 7 6 23 23 O 1.42909 * 109.33653 * 56.67688 * 22 21 7 24 24 H 1.09000 * 109.47589 * 299.99805 * 1 2 3 25 25 H 1.09002 * 109.47075 * 60.00632 * 1 2 3 26 26 H 1.09008 * 109.46811 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47165 * 240.00006 * 2 1 3 28 28 H 1.08995 * 109.47435 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47382 * 299.99944 * 3 2 1 30 30 H 1.09005 * 109.47227 * 59.99491 * 3 2 1 31 31 H 1.09005 * 109.51650 * 63.41640 * 6 4 2 32 32 H 1.09005 * 109.51569 * 303.25870 * 6 4 2 33 33 H 1.09003 * 110.53807 * 145.74527 * 8 7 6 34 34 H 1.09001 * 110.66753 * 23.02343 * 8 7 6 35 35 H 1.09002 * 110.51411 * 119.00722 * 9 8 7 36 36 H 1.08998 * 110.51002 * 241.58650 * 9 8 7 37 37 H 0.97004 * 119.99495 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.51226 * 64.30337 * 21 7 6 39 39 H 1.08997 * 109.51507 * 184.46571 * 21 7 6 40 40 H 1.08998 * 109.49070 * 296.71298 * 22 21 7 41 41 H 1.09003 * 109.51340 * 176.64629 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6761 -0.2082 2.1395 6 6 3.5720 -0.7210 1.2502 7 6 4.0733 -1.5129 2.4542 8 6 3.6954 -0.7885 3.7593 9 6 4.9593 0.0304 4.1095 10 6 5.9482 -0.2927 2.9670 11 1 5.8917 0.4695 2.1898 12 6 7.3532 -0.3935 3.5028 13 1 7.5416 -0.2447 4.5557 14 6 8.3979 -0.6768 2.6488 15 7 8.1682 -0.8595 1.3668 16 14 10.1395 -0.8012 3.3127 17 1 10.2054 -1.8805 4.3305 18 1 11.0725 -1.1119 2.1999 19 1 10.5253 0.4906 3.9353 20 8 5.5102 -1.5717 2.4497 21 6 3.4855 -2.9209 2.4463 22 6 1.9571 -2.8286 2.3950 23 8 1.5671 -2.0698 1.2485 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.9360 0.3047 1.3117 32 1 3.9368 -1.1831 0.3328 33 1 3.4763 -1.5093 4.5471 34 1 2.8436 -0.1275 3.5996 35 1 4.7312 1.0961 4.1273 36 1 5.3670 -0.2880 5.0689 37 1 8.9032 -1.0592 0.7660 38 1 3.8473 -3.4615 1.5716 39 1 3.7885 -3.4471 3.3515 40 1 1.5919 -2.3382 3.2973 41 1 1.5338 -3.8309 2.3290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309205717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:49 Heat of formation + Delta-G solvation = -133.175143 kcal Electronic energy + Delta-G solvation = -20488.953060 eV Core-core repulsion = 17560.126524 eV Total energy + Delta-G solvation = -2928.826536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.51586 -38.99706 -36.29799 -34.94203 -33.27854 -32.49283 -31.06354 -28.90919 -27.89947 -25.63542 -24.88111 -24.08617 -22.04428 -21.06638 -19.92137 -18.76260 -17.46384 -17.24092 -16.82526 -16.47265 -15.85661 -15.58357 -15.29106 -15.04466 -14.60116 -14.51355 -13.93664 -13.85321 -13.66109 -13.48921 -12.97339 -12.82119 -12.74196 -12.53152 -12.40583 -12.26861 -12.10787 -12.02663 -11.86161 -11.75051 -11.48593 -11.25453 -11.17885 -10.90450 -10.70330 -10.44950 -9.95532 -8.18817 -6.39552 1.38199 1.41581 1.49234 2.38262 2.79312 3.00624 3.48104 3.65796 3.88448 3.90478 3.97705 4.09195 4.16936 4.21657 4.33121 4.38237 4.42087 4.50759 4.59861 4.71736 4.76563 4.79246 4.82116 4.87927 4.97083 4.99981 5.01562 5.04604 5.14441 5.17346 5.23405 5.34136 5.40758 5.45583 5.50545 5.51651 5.71342 6.14523 6.31222 6.55423 6.92701 7.36065 8.89408 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030356 B = 0.006084 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.172807 B = 4601.339158 C = 4911.511819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.107 3.893 5 H 0.071 0.929 6 C -0.149 4.149 7 C 0.079 3.921 8 C -0.134 4.134 9 C -0.141 4.141 10 C 0.202 3.798 11 H -0.008 1.008 12 C -0.555 4.555 13 H 0.066 0.934 14 C 0.021 3.979 15 N -0.905 5.905 16 Si 0.964 3.036 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.262 1.262 20 O -0.383 6.383 21 C -0.139 4.139 22 C 0.072 3.928 23 O -0.389 6.389 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.262 0.738 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 1.093 1.094 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.204 4.204 4 C 0.049 3.951 5 H 0.089 0.911 6 C -0.187 4.187 7 C 0.039 3.961 8 C -0.171 4.171 9 C -0.178 4.178 10 C 0.147 3.853 11 H 0.010 0.990 12 C -0.592 4.592 13 H 0.084 0.916 14 C -0.181 4.181 15 N -0.542 5.542 16 Si 0.788 3.212 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.186 1.186 20 O -0.303 6.303 21 C -0.176 4.176 22 C -0.005 4.005 23 O -0.308 6.308 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.481 0.814 0.707 15.518 hybrid contribution 1.661 0.059 0.153 1.670 sum -13.820 0.873 0.860 13.874 Atomic orbital electron populations 1.21707 0.92910 1.02193 1.02373 1.21116 0.97653 0.95820 0.96171 1.21858 1.00517 0.94825 1.03174 1.22198 0.90531 0.83162 0.99200 0.91091 1.22468 0.97443 1.00554 0.98225 1.22023 0.84261 0.95583 0.94265 1.22951 0.97836 0.99338 0.96989 1.22940 0.95462 0.99782 0.99659 1.20404 0.92956 0.82308 0.89662 0.99027 1.21490 0.91971 1.50851 0.94871 0.91635 1.26007 1.03802 0.93390 0.94935 1.70181 1.33153 1.46598 1.04260 0.85547 0.78508 0.79193 0.77989 1.19476 1.20818 1.18641 1.89383 1.17102 1.37870 1.85952 1.22111 0.97597 0.95378 1.02563 1.22688 0.91417 0.97488 0.88863 1.87832 1.74692 1.23798 1.44483 0.92003 0.91514 0.92516 0.91976 0.94075 0.90605 0.91477 0.91852 0.94007 0.90113 0.89486 0.91199 0.92027 0.92957 0.93072 0.90262 0.91295 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.05 71.98 0.65 -2.03 16 2 C -0.09 -2.24 2.72 -10.79 -0.03 -2.27 16 3 C -0.15 -3.42 8.84 71.98 0.64 -2.79 16 4 C 0.11 3.09 2.01 30.66 0.06 3.15 16 5 H 0.07 1.86 6.52 -2.39 -0.02 1.84 16 6 C -0.15 -5.65 3.85 30.52 0.12 -5.53 16 7 C 0.08 3.18 0.87 -10.74 -0.01 3.17 16 8 C -0.13 -4.60 5.13 31.47 0.16 -4.44 16 9 C -0.14 -5.84 6.62 31.66 0.21 -5.63 16 10 C 0.20 10.84 2.65 30.37 0.08 10.92 16 11 H -0.01 -0.46 7.43 -2.39 -0.02 -0.48 16 12 C -0.55 -32.21 8.78 25.60 0.22 -31.99 16 13 H 0.07 3.64 7.56 -2.91 -0.02 3.61 16 14 C 0.02 1.20 5.43 84.65 0.46 1.66 16 15 N -0.90 -56.25 13.07 21.45 0.28 -55.97 16 16 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 20 O -0.38 -20.80 10.48 -148.98 -1.56 -22.36 16 21 C -0.14 -4.75 5.21 30.53 0.16 -4.59 16 22 C 0.07 1.86 6.65 72.05 0.48 2.33 16 23 O -0.39 -11.40 9.73 -148.98 -1.45 -12.85 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.20 7.69 -2.38 -0.02 1.18 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.15 6.51 -2.39 -0.02 1.13 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 2.53 5.69 -2.38 -0.01 2.52 16 32 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.08 2.48 7.78 -2.39 -0.02 2.46 16 34 H 0.09 2.50 6.19 -2.39 -0.01 2.48 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.06 2.55 7.70 -2.39 -0.02 2.53 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.60 8.04 -2.39 -0.02 2.58 16 40 H 0.07 1.52 7.54 -2.39 -0.02 1.51 16 41 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -68.90 312.17 3.48 -65.42 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.98 Total: 16.88 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.20 Total: -38.03 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -3.01 Total: -35.21 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.90 3.48 -65.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309205717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.755 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds