Wall clock time and date at job start Mon Mar 30 2020 06:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99857 * 2 1 4 4 H 1.09005 * 109.44597 * 30.03367 * 3 2 1 5 5 C 1.53089 * 109.46298 * 270.06985 * 3 2 1 6 6 C 1.53000 * 109.42058 * 299.13167 * 5 3 2 7 7 C 1.53002 * 109.55050 * 299.58481 * 6 5 3 8 8 C 1.53090 * 109.41801 * 60.42153 * 7 6 5 9 9 C 1.52469 * 109.53188 * 300.83352 * 8 7 6 10 10 C 1.54031 * 110.09404 * 180.71962 * 9 8 7 11 11 C 1.54607 * 103.93339 * 95.32197 * 10 9 8 12 12 C 1.54510 * 104.05852 * 359.70228 * 11 10 9 13 13 C 1.52997 * 110.35589 * 264.85998 * 12 11 10 14 14 C 1.50700 * 110.35564 * 142.67633 * 12 11 10 15 15 H 1.08002 * 119.99769 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00010 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99632 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99837 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47154 * 59.99473 * 18 16 14 20 20 H 1.48500 * 109.46854 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47153 * 299.99558 * 18 16 14 22 22 O 1.43907 * 110.18462 * 296.54731 * 9 8 7 23 23 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47009 * 299.99508 * 1 2 3 25 25 H 1.08997 * 109.47479 * 60.00148 * 1 2 3 26 26 H 1.08996 * 109.48229 * 179.14221 * 5 3 2 27 27 H 1.09002 * 109.48608 * 59.11665 * 5 3 2 28 28 H 1.08999 * 109.45967 * 179.55623 * 6 5 3 29 29 H 1.09008 * 109.44571 * 59.59749 * 6 5 3 30 30 H 1.09003 * 109.48314 * 300.43699 * 7 6 5 31 31 H 1.09002 * 109.49413 * 180.41324 * 7 6 5 32 32 H 1.09001 * 109.46121 * 180.81394 * 8 7 6 33 33 H 1.09000 * 109.45713 * 60.84909 * 8 7 6 34 34 H 1.08993 * 110.53334 * 336.70998 * 10 9 8 35 35 H 1.09002 * 110.53724 * 213.93543 * 10 9 8 36 36 H 1.09003 * 110.50755 * 118.34495 * 11 10 9 37 37 H 1.08999 * 110.51119 * 240.91721 * 11 10 9 38 38 H 1.09001 * 109.47313 * 24.50540 * 13 12 11 39 39 H 1.08999 * 109.47289 * 144.50034 * 13 12 11 40 40 H 1.09000 * 109.47354 * 264.50597 * 13 12 11 41 41 H 0.96999 * 119.99376 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9989 0.5145 5 6 2.2161 1.7722 -1.4434 6 6 3.1663 0.8097 -2.1587 7 6 4.5167 0.7946 -1.4395 8 6 4.3194 0.3241 0.0039 9 6 3.3542 1.2632 0.7188 10 6 3.1602 0.8117 2.1786 11 6 4.1733 1.6694 2.9713 12 6 4.8628 2.5310 1.8898 13 6 6.1657 1.8709 1.4342 14 6 5.1348 3.9160 2.4178 15 1 4.8493 4.1751 3.4267 16 6 5.7472 4.8529 1.6125 17 7 6.0943 4.5375 0.3838 18 14 6.0836 6.5699 2.2667 19 1 6.9712 6.4821 3.4539 20 1 6.7457 7.3801 1.2129 21 1 4.8019 7.2122 2.6534 22 8 3.9162 2.5856 0.7993 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.6453 2.7741 -1.4438 27 1 1.2568 1.7875 -1.9609 28 1 3.3071 1.1370 -3.1888 29 1 2.7399 -0.1935 -2.1515 30 1 4.9400 1.7991 -1.4397 31 1 5.1953 0.1142 -1.9541 32 1 5.2789 0.3268 0.5211 33 1 3.9100 -0.6861 0.0037 34 1 3.3909 -0.2482 2.2848 35 1 2.1426 1.0177 2.5105 36 1 3.6560 2.3029 3.6919 37 1 4.8999 1.0329 3.4762 38 1 6.1127 0.7977 1.6173 39 1 6.3111 2.0509 0.3691 40 1 7.0016 2.2937 1.9916 41 1 6.5255 5.1965 -0.1826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309353040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:22 Heat of formation + Delta-G solvation = -94.683686 kcal Electronic energy + Delta-G solvation = -21235.817136 eV Core-core repulsion = 18308.659715 eV Total energy + Delta-G solvation = -2927.157421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93769 -37.40925 -34.92431 -32.74743 -31.05225 -30.12158 -29.59547 -27.54784 -26.09144 -25.08357 -22.71352 -21.98515 -20.36378 -19.49340 -18.46623 -16.58920 -15.98801 -15.35585 -15.10540 -14.63573 -14.34252 -13.78201 -13.58608 -13.44312 -13.05183 -12.86529 -12.28445 -12.09609 -11.73988 -11.68234 -11.33169 -11.12795 -10.89843 -10.78340 -10.69122 -10.54685 -10.40178 -10.29972 -10.15499 -9.94170 -9.73989 -9.53947 -9.10453 -9.04226 -8.67341 -8.45466 -8.04958 -5.97597 -4.09971 3.32539 3.37324 3.39960 4.00593 4.43242 5.08610 5.21088 5.32595 5.41570 5.49379 5.51047 5.64029 5.74607 5.75673 5.82417 5.89033 5.98650 6.00319 6.19781 6.23684 6.30596 6.38621 6.44663 6.57410 6.60051 6.65236 6.74274 6.80039 6.86232 6.93756 6.94986 7.05824 7.12344 7.32662 7.32992 7.61732 7.82830 8.00491 8.38305 8.61346 9.01283 9.59283 11.07558 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.007762 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.747195 B = 3606.413732 C = 3768.227682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.107 3.893 4 H 0.059 0.941 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.145 4.145 9 C 0.105 3.895 10 C -0.137 4.137 11 C -0.143 4.143 12 C 0.230 3.770 13 C -0.135 4.135 14 C -0.523 4.523 15 H 0.061 0.939 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 O -0.332 6.332 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 -7.912 -2.101 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C 0.049 3.951 4 H 0.077 0.923 5 C -0.171 4.171 6 C -0.144 4.144 7 C -0.151 4.151 8 C -0.182 4.182 9 C 0.064 3.936 10 C -0.175 4.175 11 C -0.181 4.181 12 C 0.193 3.807 13 C -0.192 4.192 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.125 4.125 17 N -0.494 5.494 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 O -0.252 6.252 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.602 -7.821 -2.411 10.515 hybrid contribution -0.123 1.016 0.402 1.100 sum -6.725 -6.805 -2.009 9.776 Atomic orbital electron populations 1.22705 0.82234 1.01885 0.99597 1.87864 1.18471 1.28342 1.95029 1.21867 0.94276 0.83356 0.95568 0.92331 1.21941 0.98807 1.00945 0.95437 1.21355 0.96106 0.99088 0.97888 1.21440 0.96019 1.02541 0.95098 1.22364 1.01392 0.97879 0.96541 1.21514 0.91122 0.88049 0.92910 1.22800 0.99255 0.99361 0.96057 1.23110 0.97567 0.97839 0.99557 1.19854 0.85482 0.94061 0.81337 1.22387 0.99206 0.94676 1.02917 1.20912 1.40087 0.96097 0.98911 0.92115 1.25004 0.94482 0.98330 0.94697 1.70034 1.38576 1.34205 1.06566 0.86734 0.78480 0.84600 0.78571 1.20228 1.21263 1.20249 1.89420 1.57184 1.23406 1.55159 0.90249 0.94444 0.94539 0.89796 0.93270 0.93182 0.92433 0.90121 0.93493 0.89262 0.92743 0.92106 0.92619 0.92149 0.92693 0.96288 0.91163 0.93644 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 101.05 1.09 1.50 16 2 O -0.38 -6.20 8.85 -35.23 -0.31 -6.51 16 3 C 0.11 1.94 1.92 -26.96 -0.05 1.89 16 4 H 0.06 1.08 7.79 -51.93 -0.40 0.68 16 5 C -0.13 -2.33 5.52 -26.68 -0.15 -2.48 16 6 C -0.11 -1.78 5.77 -26.73 -0.15 -1.93 16 7 C -0.11 -2.10 5.67 -26.68 -0.15 -2.25 16 8 C -0.14 -2.77 4.00 -26.96 -0.11 -2.87 16 9 C 0.11 2.13 0.49 -90.62 -0.04 2.09 16 10 C -0.14 -2.64 5.86 -25.35 -0.15 -2.79 16 11 C -0.14 -3.05 6.02 -25.09 -0.15 -3.20 16 12 C 0.23 5.67 0.73 -90.98 -0.07 5.60 16 13 C -0.13 -3.18 6.36 37.16 0.24 -2.95 16 14 C -0.52 -14.30 8.09 -34.44 -0.28 -14.58 16 15 H 0.06 1.64 7.56 -52.49 -0.40 1.24 16 16 C 0.08 2.21 5.28 -17.82 -0.09 2.12 16 17 N -0.86 -24.09 11.69 55.43 0.65 -23.44 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 O -0.33 -8.23 9.28 -35.23 -0.33 -8.56 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.04 0.42 7.85 -51.93 -0.41 0.01 16 26 H 0.08 1.66 7.83 -51.93 -0.41 1.26 16 27 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.92 7.69 -51.92 -0.40 0.52 16 30 H 0.08 1.75 7.42 -51.93 -0.39 1.36 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.78 3.69 -51.93 -0.19 1.59 16 33 H 0.05 0.98 7.82 -51.93 -0.41 0.58 16 34 H 0.06 1.08 7.84 -51.93 -0.41 0.68 16 35 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 36 H 0.06 1.30 7.70 -51.93 -0.40 0.90 16 37 H 0.05 1.09 7.74 -51.93 -0.40 0.69 16 38 H 0.02 0.39 5.66 -51.93 -0.29 0.10 16 39 H 0.07 1.77 6.57 -51.93 -0.34 1.42 16 40 H 0.04 1.11 7.82 -51.93 -0.41 0.71 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -28.44 304.71 -7.37 -35.81 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.89 Total: 1.88 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -0.07 Total: -19.86 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.65 Total: -23.44 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.64 Total: -15.07 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.44 -7.37 -35.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309353040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.870 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds