Wall clock time and date at job start Mon Mar 30 2020 06:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99857 * 2 1 4 4 H 1.09005 * 109.44597 * 30.03367 * 3 2 1 5 5 C 1.53089 * 109.46298 * 270.06985 * 3 2 1 6 6 C 1.53000 * 109.42058 * 299.13167 * 5 3 2 7 7 C 1.53002 * 109.55050 * 299.58481 * 6 5 3 8 8 C 1.53090 * 109.41801 * 60.42153 * 7 6 5 9 9 C 1.52469 * 109.53188 * 300.83352 * 8 7 6 10 10 C 1.54031 * 110.09404 * 180.71962 * 9 8 7 11 11 C 1.54607 * 103.93339 * 95.32197 * 10 9 8 12 12 C 1.54510 * 104.05852 * 359.70228 * 11 10 9 13 13 C 1.52997 * 110.35589 * 264.85998 * 12 11 10 14 14 C 1.50700 * 110.35564 * 142.67633 * 12 11 10 15 15 H 1.08002 * 119.99769 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00010 * 180.02562 * 14 12 11 17 17 N 1.31518 * 119.99632 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99837 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47154 * 59.99473 * 18 16 14 20 20 H 1.48500 * 109.46854 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47153 * 299.99558 * 18 16 14 22 22 O 1.43907 * 110.18462 * 296.54731 * 9 8 7 23 23 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47009 * 299.99508 * 1 2 3 25 25 H 1.08997 * 109.47479 * 60.00148 * 1 2 3 26 26 H 1.08996 * 109.48229 * 179.14221 * 5 3 2 27 27 H 1.09002 * 109.48608 * 59.11665 * 5 3 2 28 28 H 1.08999 * 109.45967 * 179.55623 * 6 5 3 29 29 H 1.09008 * 109.44571 * 59.59749 * 6 5 3 30 30 H 1.09003 * 109.48314 * 300.43699 * 7 6 5 31 31 H 1.09002 * 109.49413 * 180.41324 * 7 6 5 32 32 H 1.09001 * 109.46121 * 180.81394 * 8 7 6 33 33 H 1.09000 * 109.45713 * 60.84909 * 8 7 6 34 34 H 1.08993 * 110.53334 * 336.70998 * 10 9 8 35 35 H 1.09002 * 110.53724 * 213.93543 * 10 9 8 36 36 H 1.09003 * 110.50755 * 118.34495 * 11 10 9 37 37 H 1.08999 * 110.51119 * 240.91721 * 11 10 9 38 38 H 1.09001 * 109.47313 * 24.50540 * 13 12 11 39 39 H 1.08999 * 109.47289 * 144.50034 * 13 12 11 40 40 H 1.09000 * 109.47354 * 264.50597 * 13 12 11 41 41 H 0.96999 * 119.99376 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9989 0.5145 5 6 2.2161 1.7722 -1.4434 6 6 3.1663 0.8097 -2.1587 7 6 4.5167 0.7946 -1.4395 8 6 4.3194 0.3241 0.0039 9 6 3.3542 1.2632 0.7188 10 6 3.1602 0.8117 2.1786 11 6 4.1733 1.6694 2.9713 12 6 4.8628 2.5310 1.8898 13 6 6.1657 1.8709 1.4342 14 6 5.1348 3.9160 2.4178 15 1 4.8493 4.1751 3.4267 16 6 5.7472 4.8529 1.6125 17 7 6.0943 4.5375 0.3838 18 14 6.0836 6.5699 2.2667 19 1 6.9712 6.4821 3.4539 20 1 6.7457 7.3801 1.2129 21 1 4.8019 7.2122 2.6534 22 8 3.9162 2.5856 0.7993 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.6453 2.7741 -1.4438 27 1 1.2568 1.7875 -1.9609 28 1 3.3071 1.1370 -3.1888 29 1 2.7399 -0.1935 -2.1515 30 1 4.9400 1.7991 -1.4397 31 1 5.1953 0.1142 -1.9541 32 1 5.2789 0.3268 0.5211 33 1 3.9100 -0.6861 0.0037 34 1 3.3909 -0.2482 2.2848 35 1 2.1426 1.0177 2.5105 36 1 3.6560 2.3029 3.6919 37 1 4.8999 1.0329 3.4762 38 1 6.1127 0.7977 1.6173 39 1 6.3111 2.0509 0.3691 40 1 7.0016 2.2937 1.9916 41 1 6.5255 5.1965 -0.1826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309353040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:22 Heat of formation + Delta-G solvation = -110.952117 kcal Electronic energy + Delta-G solvation = -21236.522588 eV Core-core repulsion = 18308.659715 eV Total energy + Delta-G solvation = -2927.862873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50914 -38.85696 -36.35217 -34.70927 -32.80004 -31.80542 -31.11726 -29.09894 -27.39669 -26.92579 -24.33698 -23.43950 -21.94190 -21.23701 -19.99215 -18.51800 -17.39562 -16.94618 -16.39639 -16.35461 -15.96542 -15.39880 -15.12900 -14.87748 -14.62616 -14.40848 -13.92411 -13.77731 -13.34767 -13.17273 -12.86271 -12.72311 -12.65508 -12.43395 -12.34171 -12.15108 -12.04965 -11.97963 -11.75467 -11.63830 -11.31040 -11.04313 -10.78983 -10.74650 -10.46790 -10.15608 -9.85029 -8.04548 -6.23627 1.42166 1.43188 1.50278 2.44037 2.69788 3.22171 3.70421 3.78617 3.95368 4.13210 4.20627 4.29063 4.31407 4.48678 4.49001 4.56664 4.60604 4.67559 4.70318 4.84264 4.86144 4.87101 4.95458 4.99536 5.00866 5.10647 5.16341 5.22007 5.24931 5.27706 5.38579 5.43380 5.48112 5.63799 5.72757 5.75750 6.06380 6.33005 6.40119 6.67722 7.08357 7.49063 8.98992 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.007762 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.747195 B = 3606.413732 C = 3768.227682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.385 6.385 3 C 0.114 3.886 4 H 0.050 0.950 5 C -0.132 4.132 6 C -0.100 4.100 7 C -0.111 4.111 8 C -0.140 4.140 9 C 0.094 3.906 10 C -0.129 4.129 11 C -0.141 4.141 12 C 0.218 3.782 13 C -0.118 4.118 14 C -0.547 4.547 15 H 0.054 0.946 16 C 0.035 3.965 17 N -0.883 5.883 18 Si 0.947 3.053 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.277 1.277 22 O -0.362 6.362 23 H 0.105 0.895 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.024 0.976 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.000 -9.331 -2.161 12.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.304 6.304 3 C 0.056 3.944 4 H 0.068 0.932 5 C -0.170 4.170 6 C -0.138 4.138 7 C -0.149 4.149 8 C -0.177 4.177 9 C 0.054 3.946 10 C -0.166 4.166 11 C -0.179 4.179 12 C 0.180 3.820 13 C -0.175 4.175 14 C -0.585 4.585 15 H 0.073 0.927 16 C -0.168 4.168 17 N -0.519 5.519 18 Si 0.773 3.227 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.202 1.202 22 O -0.282 6.282 23 H 0.123 0.877 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.851 -9.249 -2.462 12.379 hybrid contribution 0.202 1.409 0.419 1.484 sum -7.649 -7.840 -2.043 11.142 Atomic orbital electron populations 1.22974 0.80032 1.03835 1.00323 1.87831 1.20760 1.26719 1.95101 1.21625 0.93090 0.84282 0.95391 0.93218 1.21893 1.00027 0.99296 0.95743 1.21320 0.94665 0.99641 0.98157 1.21379 0.97454 1.00497 0.95523 1.22283 1.00487 0.98384 0.96506 1.21770 0.92399 0.86388 0.94061 1.22767 0.99006 0.99977 0.94881 1.23036 0.98197 0.97835 0.98782 1.19902 0.86168 0.93459 0.82458 1.22201 0.98247 0.96114 1.00971 1.21307 1.40282 0.97941 0.98929 0.92737 1.25695 0.94423 1.01726 0.94946 1.70167 1.39251 1.35056 1.07441 0.85807 0.78274 0.80444 0.78193 1.19380 1.20940 1.20206 1.89345 1.57434 1.26265 1.55178 0.87685 0.94055 0.93534 0.93158 0.90809 0.91861 0.90876 0.94215 0.91716 0.90548 0.90986 0.90094 0.91851 0.92915 0.91294 0.93656 0.93343 0.95651 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.82 113.37 1.23 1.75 16 2 O -0.38 -11.43 8.85 -148.98 -1.32 -12.75 16 3 C 0.11 3.97 1.92 30.45 0.06 4.03 16 4 H 0.05 1.79 7.79 -2.38 -0.02 1.77 16 5 C -0.13 -4.45 5.52 30.62 0.17 -4.28 16 6 C -0.10 -3.16 5.77 30.59 0.18 -2.98 16 7 C -0.11 -4.03 5.67 30.63 0.17 -3.85 16 8 C -0.14 -5.15 4.00 30.45 0.12 -5.03 16 9 C 0.09 3.74 0.49 -10.80 -0.01 3.73 16 10 C -0.13 -4.74 5.86 31.49 0.18 -4.55 16 11 C -0.14 -5.91 6.02 31.65 0.19 -5.72 16 12 C 0.22 10.87 0.73 -11.03 -0.01 10.86 16 13 C -0.12 -5.68 6.36 71.98 0.46 -5.22 16 14 C -0.55 -30.56 8.09 25.60 0.21 -30.35 16 15 H 0.05 3.01 7.56 -2.91 -0.02 2.98 16 16 C 0.04 1.97 5.28 84.66 0.45 2.42 16 17 N -0.88 -51.05 11.69 21.45 0.25 -50.80 16 18 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 O -0.36 -18.26 9.28 -148.98 -1.38 -19.64 16 23 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 0.86 8.08 -2.39 -0.02 0.85 16 25 H 0.05 0.92 7.85 -2.39 -0.02 0.90 16 26 H 0.05 2.03 7.83 -2.39 -0.02 2.01 16 27 H 0.07 2.09 7.85 -2.39 -0.02 2.07 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.10 7.69 -2.38 -0.02 2.08 16 30 H 0.04 1.76 7.42 -2.39 -0.02 1.75 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.98 3.69 -2.39 -0.01 2.98 16 33 H 0.07 2.40 7.82 -2.39 -0.02 2.38 16 34 H 0.08 2.64 7.84 -2.39 -0.02 2.62 16 35 H 0.06 2.21 7.85 -2.39 -0.02 2.19 16 36 H 0.05 2.25 7.70 -2.39 -0.02 2.23 16 37 H 0.07 2.64 7.74 -2.39 -0.02 2.63 16 38 H 0.05 1.88 5.66 -2.39 -0.01 1.87 16 39 H 0.05 2.51 6.57 -2.39 -0.02 2.49 16 40 H 0.02 1.26 7.82 -2.39 -0.02 1.24 16 41 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -61.73 304.71 3.97 -57.77 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.99 Total: 18.59 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 3.40 Total: -39.18 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.25 Total: -50.80 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -2.70 Total: -32.40 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -61.73 3.97 -57.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309353040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.185 kcal (2) G-P(sol) polarization free energy of solvation -61.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds