Wall clock time and date at job start Mon Mar 30 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99938 * 2 1 4 4 C 1.52998 * 109.45798 * 149.99997 * 3 2 1 5 5 C 1.53085 * 109.41978 * 180.39499 * 4 3 2 6 6 C 1.52523 * 109.50945 * 300.75243 * 5 4 3 7 7 C 1.54559 * 109.68644 * 297.75133 * 6 5 4 8 8 C 1.55379 * 100.88727 * 204.87637 * 7 6 5 9 9 C 1.54427 * 102.28519 * 33.73259 * 8 7 6 10 10 C 1.53003 * 109.83141 * 219.03802 * 9 8 7 11 11 C 1.50699 * 109.83209 * 98.15182 * 9 8 7 12 12 H 1.08006 * 120.00066 * 0.02562 * 11 9 8 13 13 C 1.37874 * 120.00123 * 179.97438 * 11 9 8 14 14 N 1.31513 * 119.99787 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00353 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46871 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47403 * 119.99759 * 15 13 11 18 18 H 1.48496 * 109.47277 * 239.99975 * 15 13 11 19 19 O 1.43161 * 110.54524 * 181.62547 * 6 5 4 20 20 C 1.52534 * 110.61855 * 58.87094 * 6 5 4 21 21 C 1.52995 * 109.45084 * 270.09283 * 3 2 1 22 22 H 1.09004 * 109.47319 * 300.00306 * 1 2 3 23 23 H 1.08994 * 109.47134 * 60.00707 * 1 2 3 24 24 H 1.09004 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.45594 * 30.03245 * 3 2 1 26 26 H 1.08994 * 109.48319 * 60.40810 * 4 3 2 27 27 H 1.09005 * 109.47859 * 300.38001 * 4 3 2 28 28 H 1.08999 * 109.46757 * 180.74087 * 5 4 3 29 29 H 1.08998 * 109.46005 * 60.76396 * 5 4 3 30 30 H 1.08993 * 111.14102 * 86.97265 * 7 6 5 31 31 H 1.09007 * 111.13429 * 322.77589 * 7 6 5 32 32 H 1.08996 * 110.84024 * 275.53546 * 8 7 6 33 33 H 1.09000 * 110.84344 * 151.93342 * 8 7 6 34 34 H 1.09000 * 109.46768 * 60.00226 * 10 9 8 35 35 H 1.08999 * 109.46947 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47112 * 300.00160 * 10 9 8 37 37 H 0.97000 * 119.99723 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.46294 * 61.14856 * 20 6 5 39 39 H 1.08997 * 109.46578 * 181.12405 * 20 6 5 40 40 H 1.09008 * 109.47727 * 299.58697 * 21 3 2 41 41 H 1.08992 * 109.48337 * 59.60733 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2630 0.7213 5 6 3.9761 2.6638 0.7294 6 6 4.1643 3.1459 -0.7054 7 6 5.1467 2.2093 -1.4447 8 6 5.6915 3.1636 -2.5432 9 6 5.6953 4.5283 -1.8206 10 6 5.2508 5.6284 -2.7866 11 6 7.0787 4.8297 -1.3044 12 1 7.8818 4.1266 -1.4696 13 6 7.3195 6.0034 -0.6223 14 7 6.3420 6.8602 -0.4225 15 14 9.0345 6.3773 0.0169 16 1 9.9489 5.2621 -0.3376 17 1 9.5283 7.6359 -0.5974 18 1 8.9899 6.5314 1.4931 19 8 4.7758 4.4402 -0.7244 20 6 2.8289 3.1744 -1.4419 21 6 2.2153 1.7719 -1.4426 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.3450 1.9991 0.5144 26 1 4.0266 0.5746 0.2034 27 1 3.2120 0.9245 1.7470 28 1 4.9430 2.6318 1.2316 29 1 3.3144 3.3492 1.2590 30 1 4.6242 1.3604 -1.8854 31 1 5.9457 1.8759 -0.7823 32 1 5.0248 3.1831 -3.4053 33 1 6.7012 2.8784 -2.8388 34 1 4.2438 5.4130 -3.1439 35 1 5.2561 6.5887 -2.2708 36 1 5.9363 5.6673 -3.6332 37 1 6.5114 7.6858 0.0577 38 1 2.1524 3.8666 -0.9407 39 1 2.9877 3.5019 -2.4693 40 1 2.8856 1.0822 -1.9558 41 1 1.2547 1.7955 -1.9571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309437929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:11 Heat of formation + Delta-G solvation = -106.548868 kcal Electronic energy + Delta-G solvation = -20552.445574 eV Core-core repulsion = 17624.773640 eV Total energy + Delta-G solvation = -2927.671934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85179 -37.94028 -35.26751 -32.58843 -31.01964 -30.44751 -29.67863 -27.44474 -25.96037 -25.08264 -22.76875 -22.18215 -21.34728 -19.34211 -18.22964 -16.65259 -16.49989 -15.78847 -15.07903 -14.75418 -14.55026 -14.28146 -13.61172 -13.06956 -12.89463 -12.80324 -12.49049 -12.01736 -12.00944 -11.82953 -11.51961 -11.20220 -11.05122 -10.91688 -10.84852 -10.77409 -10.52116 -10.38534 -10.26652 -10.22991 -9.92094 -9.56069 -9.49671 -9.11259 -8.99473 -8.43842 -7.79084 -5.90046 -4.05764 3.31493 3.39990 3.43249 3.79407 4.46075 4.82360 4.95621 5.03617 5.25093 5.29603 5.37011 5.46639 5.53448 5.58020 5.63496 5.65269 5.71983 5.80949 5.92884 6.00719 6.14636 6.18865 6.23358 6.32281 6.46604 6.50973 6.63207 6.64334 6.74127 6.89863 6.92105 6.97667 7.07463 7.19768 7.28357 7.44623 7.83209 8.16084 8.44308 8.72291 9.13384 9.65180 11.11679 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.038061 B = 0.005913 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.491636 B = 4734.412845 C = 4946.035597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.090 3.910 4 C -0.111 4.111 5 C -0.104 4.104 6 C 0.106 3.894 7 C -0.141 4.141 8 C -0.143 4.143 9 C 0.229 3.771 10 C -0.141 4.141 11 C -0.529 4.529 12 H 0.057 0.943 13 C 0.081 3.919 14 N -0.861 5.861 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 O -0.341 6.341 20 C -0.124 4.124 21 C -0.137 4.137 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.010 0.990 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.257 0.743 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 -9.841 -0.258 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.032 3.968 4 C -0.148 4.148 5 C -0.142 4.142 6 C 0.065 3.935 7 C -0.178 4.178 8 C -0.180 4.180 9 C 0.192 3.808 10 C -0.198 4.198 11 C -0.566 4.566 12 H 0.076 0.924 13 C -0.124 4.124 14 N -0.498 5.498 15 Si 0.713 3.287 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.260 6.260 20 C -0.162 4.162 21 C -0.175 4.175 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.029 0.971 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.141 -9.651 -0.042 13.293 hybrid contribution 0.692 0.340 0.170 0.789 sum -8.449 -9.312 0.127 12.574 Atomic orbital electron populations 1.22732 0.81769 1.02192 0.99809 1.87892 1.19099 1.28692 1.95127 1.22240 0.95057 0.83558 0.95919 1.21586 0.94934 0.98186 1.00114 1.21437 1.01414 0.94256 0.97081 1.21580 0.91611 0.87038 0.93251 1.23200 0.98645 0.97683 0.98308 1.23219 1.00083 0.97631 0.97106 1.19641 0.88510 0.89060 0.83571 1.22020 0.95804 1.04066 0.97936 1.21279 0.93495 1.04198 1.37656 0.92443 1.24985 0.96309 0.96018 0.95099 1.69965 1.30773 1.09495 1.39582 0.86669 0.85087 0.78188 0.78761 1.19812 1.21045 1.20981 1.88715 1.57895 1.27659 1.51742 1.21850 0.97702 0.95174 1.01506 1.22071 1.00799 0.97893 0.96698 0.94289 0.94245 0.90071 0.92350 0.91016 0.91666 0.90683 0.91925 0.91946 0.91217 0.93276 0.91614 0.97070 0.89174 0.94722 0.93244 0.91963 0.91513 0.90913 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.42 16 2 O -0.39 -5.33 10.35 -35.23 -0.36 -5.69 16 3 C 0.09 1.25 2.60 -26.73 -0.07 1.18 16 4 C -0.11 -1.62 5.37 -26.69 -0.14 -1.77 16 5 C -0.10 -1.83 5.09 -26.93 -0.14 -1.97 16 6 C 0.11 2.09 0.89 -90.28 -0.08 2.01 16 7 C -0.14 -2.66 4.83 -24.65 -0.12 -2.78 16 8 C -0.14 -2.99 5.69 -24.72 -0.14 -3.13 16 9 C 0.23 5.72 0.82 -91.02 -0.07 5.64 16 10 C -0.14 -3.45 8.53 37.16 0.32 -3.14 16 11 C -0.53 -14.53 8.23 -34.44 -0.28 -14.81 16 12 H 0.06 1.57 7.48 -52.48 -0.39 1.17 16 13 C 0.08 2.24 5.26 -17.82 -0.09 2.15 16 14 N -0.86 -24.79 10.92 55.43 0.61 -24.19 16 15 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 O -0.34 -8.59 9.57 -35.23 -0.34 -8.93 16 20 C -0.12 -2.14 5.08 -26.93 -0.14 -2.28 16 21 C -0.14 -1.97 5.32 -26.69 -0.14 -2.11 16 22 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 23 H 0.04 0.37 7.85 -51.93 -0.41 -0.04 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.79 7.79 -51.93 -0.40 0.38 16 26 H 0.07 1.06 7.24 -51.93 -0.38 0.69 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.03 5.81 -51.93 -0.30 0.73 16 31 H 0.07 1.35 8.02 -51.93 -0.42 0.93 16 32 H 0.05 0.95 7.48 -51.93 -0.39 0.56 16 33 H 0.07 1.37 7.61 -51.93 -0.39 0.97 16 34 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 35 H 0.09 2.46 6.01 -51.93 -0.31 2.15 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 1.20 7.38 -51.93 -0.38 0.81 16 40 H 0.07 1.07 6.18 -51.92 -0.32 0.75 16 41 H 0.06 0.74 7.85 -51.93 -0.41 0.33 16 LS Contribution 310.23 15.07 4.68 4.68 Total: -1.00 -29.55 310.23 -7.47 -37.02 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.02 Total: 0.44 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -0.01 Total: -19.59 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.61 Total: -24.19 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.70 Total: -14.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.55 -7.47 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309437929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.529 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds