Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46849 * 2 1 4 4 C 1.52993 * 109.48227 * 60.19082 * 3 2 1 5 5 H 1.09004 * 110.74902 * 162.16404 * 4 3 2 6 6 C 1.55300 * 111.02335 * 38.56784 * 4 3 2 7 7 C 1.54950 * 100.94499 * 207.59440 * 6 4 3 8 8 O 1.43652 * 105.13106 * 36.44618 * 7 6 4 9 9 C 1.43242 * 109.97253 * 335.57078 * 8 7 6 10 10 C 1.53093 * 109.47973 * 300.16097 * 3 2 1 11 11 C 1.53170 * 109.16766 * 297.61833 * 10 3 2 12 12 C 1.53169 * 109.03674 * 303.01888 * 11 10 3 13 13 C 1.53090 * 109.16636 * 56.98381 * 12 11 10 14 14 H 1.08996 * 109.48146 * 62.36652 * 13 12 11 15 15 C 1.50700 * 109.48536 * 182.39966 * 13 12 11 16 16 H 1.07998 * 119.99564 * 359.97438 * 15 13 12 17 17 C 1.37875 * 120.00053 * 179.97438 * 15 13 12 18 18 N 1.31515 * 120.00126 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99870 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47167 * 59.99924 * 19 17 15 21 21 H 1.48503 * 109.47251 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47444 * 300.00134 * 19 17 15 23 23 O 1.42905 * 109.47623 * 180.21614 * 3 2 1 24 24 H 1.08995 * 109.47326 * 52.12279 * 1 2 3 25 25 H 1.09000 * 109.47164 * 172.12051 * 1 2 3 26 26 H 1.09001 * 109.47265 * 292.11665 * 1 2 3 27 27 H 1.08998 * 109.46895 * 239.99858 * 2 1 3 28 28 H 1.09003 * 109.47026 * 119.99753 * 2 1 3 29 29 H 1.08999 * 111.12529 * 325.51395 * 6 4 3 30 30 H 1.09007 * 111.12907 * 89.67875 * 6 4 3 31 31 H 1.08992 * 110.31172 * 277.53484 * 7 6 4 32 32 H 1.08996 * 110.30978 * 155.35280 * 7 6 4 33 33 H 1.08999 * 109.83307 * 121.22284 * 9 8 7 34 34 H 1.09000 * 109.82895 * 242.20500 * 9 8 7 35 35 H 1.09004 * 109.51519 * 57.52808 * 10 3 2 36 36 H 1.09006 * 109.52003 * 177.64401 * 10 3 2 37 37 H 1.09002 * 109.53989 * 62.88499 * 11 10 3 38 38 H 1.09002 * 109.54563 * 183.15080 * 11 10 3 39 39 H 1.09008 * 109.52034 * 176.88332 * 12 11 10 40 40 H 1.08998 * 109.52718 * 297.01002 * 12 11 10 41 41 H 0.96999 * 119.99946 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5340 2.1625 1.2515 5 1 2.1183 3.0629 1.4418 6 6 1.5558 1.2186 2.4845 7 6 0.4176 1.8276 3.3414 8 8 -0.5762 2.2545 2.3960 9 6 0.0328 2.4988 1.1228 10 6 1.5264 2.1655 -1.2479 11 6 2.0860 1.4749 -2.4953 12 6 3.6157 1.4654 -2.4173 13 6 4.0487 0.7693 -1.1243 14 1 3.7118 -0.2672 -1.1391 15 6 5.5510 0.8080 -1.0114 16 1 6.1385 1.2811 -1.7843 17 6 6.1752 0.2394 0.0785 18 7 5.4597 -0.3363 1.0199 19 14 8.0374 0.2867 0.2181 20 1 8.4966 1.6988 0.2379 21 1 8.4572 -0.3885 1.4724 22 1 8.6390 -0.4131 -0.9454 23 8 3.4690 1.4427 -0.0051 24 1 -0.3634 0.6309 -0.8111 25 1 -0.3633 -1.0180 -0.1409 26 1 -0.3634 0.3869 0.9520 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3257 0.1925 2.1978 30 1 2.5120 1.2740 3.0050 31 1 0.7877 2.6795 3.9118 32 1 0.0035 1.0740 4.0111 33 1 -0.4251 1.8623 0.3656 34 1 -0.0892 3.5469 0.8495 35 1 0.4372 2.1278 -1.2683 36 1 1.8545 3.2048 -1.2276 37 1 1.7169 0.4503 -2.5413 38 1 1.7697 2.0182 -3.3858 39 1 4.0208 0.9269 -3.2741 40 1 3.9871 2.4901 -2.4223 41 1 5.8989 -0.7360 1.7869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309497721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = -86.794381 kcal Electronic energy + Delta-G solvation = -21064.953433 eV Core-core repulsion = 18138.138118 eV Total energy + Delta-G solvation = -2926.815315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33997 -37.96988 -34.26635 -32.63618 -32.24153 -30.64574 -29.57065 -28.27012 -25.39672 -24.68517 -22.54814 -21.87850 -21.25926 -19.80607 -17.78501 -16.84870 -16.57482 -15.70021 -15.06554 -14.69017 -14.55414 -14.29785 -14.24102 -13.48086 -13.00004 -12.68717 -12.53574 -12.06285 -11.95352 -11.88319 -11.44340 -11.27996 -11.05894 -10.91369 -10.86029 -10.79461 -10.59134 -10.44269 -10.22902 -10.07656 -9.99984 -9.58948 -9.41026 -9.06643 -8.75705 -8.44795 -7.78204 -6.01625 -4.12906 3.31176 3.35660 3.38537 4.18003 4.40912 4.68931 4.97360 5.19661 5.34713 5.38610 5.50119 5.52468 5.54336 5.61323 5.63667 5.75387 5.83484 5.91735 5.96767 6.05205 6.10867 6.15105 6.21634 6.28295 6.30502 6.42202 6.51992 6.55131 6.64027 6.67210 6.72568 6.86566 6.93090 6.99400 7.09874 7.25413 7.54948 7.89751 8.30030 8.78865 9.15283 9.56812 11.05481 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.007921 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.717838 B = 3533.839196 C = 4215.928492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 C 0.128 3.872 4 C -0.099 4.099 5 H 0.083 0.917 6 C -0.151 4.151 7 C 0.048 3.952 8 O -0.390 6.390 9 C 0.032 3.968 10 C -0.145 4.145 11 C -0.120 4.120 12 C -0.145 4.145 13 C 0.220 3.780 14 H 0.019 0.981 15 C -0.528 4.528 16 H 0.061 0.939 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 O -0.345 6.345 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 2.355 -0.032 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.184 4.184 3 C 0.087 3.913 4 C -0.118 4.118 5 H 0.102 0.898 6 C -0.188 4.188 7 C -0.029 4.029 8 O -0.310 6.310 9 C -0.044 4.044 10 C -0.182 4.182 11 C -0.158 4.158 12 C -0.183 4.183 13 C 0.164 3.836 14 H 0.036 0.964 15 C -0.565 4.565 16 H 0.080 0.920 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 O -0.264 6.264 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.882 2.370 0.328 10.167 hybrid contribution 1.204 -0.011 -0.138 1.212 sum -8.678 2.359 0.190 8.995 Atomic orbital electron populations 1.22351 0.97083 1.00884 1.02159 1.22187 0.94474 0.98380 1.03378 1.20935 0.86504 0.92567 0.91302 1.22510 0.94697 0.99247 0.95341 0.89818 1.23481 0.99214 1.00564 0.95544 1.23410 0.89180 0.98029 0.92234 1.88330 1.33668 1.88360 1.20614 1.23891 0.93133 1.00598 0.86797 1.22292 0.99540 1.00098 0.96304 1.21637 0.97630 0.99962 0.96566 1.22268 0.93307 1.01514 1.01209 1.19687 0.92580 0.90704 0.80613 0.96357 1.20980 0.89827 1.38377 1.07350 0.92041 1.25027 0.97963 0.94173 0.95461 1.70019 1.35055 1.34996 1.09322 0.86726 0.85895 0.78350 0.77364 1.20161 1.21228 1.20181 1.88380 1.12851 1.77150 1.47992 0.92530 0.93571 0.91104 0.91427 0.90389 0.89126 0.89504 0.92764 0.90306 0.88535 0.92478 0.92093 0.92019 0.92395 0.93360 0.92661 0.92676 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 7.86 37.16 0.29 -2.18 16 2 C -0.15 -2.68 3.87 -26.73 -0.10 -2.79 16 3 C 0.13 2.45 0.67 -90.58 -0.06 2.39 16 4 C -0.10 -1.72 2.74 -88.68 -0.24 -1.96 16 5 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 6 C -0.15 -2.51 5.81 -24.48 -0.14 -2.65 16 7 C 0.05 0.69 7.78 38.19 0.30 0.98 16 8 O -0.39 -6.16 10.85 -35.23 -0.38 -6.54 16 9 C 0.03 0.48 5.29 37.88 0.20 0.68 16 10 C -0.14 -2.46 4.12 -26.60 -0.11 -2.57 16 11 C -0.12 -2.10 5.72 -26.56 -0.15 -2.25 16 12 C -0.15 -3.04 5.36 -26.60 -0.14 -3.18 16 13 C 0.22 5.48 2.17 -27.84 -0.06 5.42 16 14 H 0.02 0.50 6.34 -51.93 -0.33 0.17 16 15 C -0.53 -14.62 8.79 -34.44 -0.30 -14.92 16 16 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 17 C 0.08 2.21 5.40 -17.82 -0.10 2.12 16 18 N -0.86 -24.43 12.84 55.43 0.71 -23.72 16 19 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 O -0.34 -8.47 9.27 -35.23 -0.33 -8.80 16 24 H 0.06 0.77 5.39 -51.93 -0.28 0.49 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.04 4.37 -51.93 -0.23 0.81 16 27 H 0.07 1.32 4.98 -51.93 -0.26 1.06 16 28 H 0.08 1.56 5.98 -51.93 -0.31 1.25 16 29 H 0.09 1.54 4.64 -51.93 -0.24 1.30 16 30 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.39 2.99 -51.93 -0.16 1.23 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.89 4.86 -51.93 -0.25 0.64 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.99 6.62 -51.93 -0.34 0.64 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -28.89 293.04 -7.39 -36.28 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.17 Total: 3.16 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -0.62 Total: -20.92 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.71 Total: -23.72 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.71 Total: -15.34 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.89 -7.39 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.516 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds