Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46849 * 2 1 4 4 C 1.52993 * 109.48227 * 60.19082 * 3 2 1 5 5 H 1.09004 * 110.74902 * 162.16404 * 4 3 2 6 6 C 1.55300 * 111.02335 * 38.56784 * 4 3 2 7 7 C 1.54950 * 100.94499 * 207.59440 * 6 4 3 8 8 O 1.43652 * 105.13106 * 36.44618 * 7 6 4 9 9 C 1.43242 * 109.97253 * 335.57078 * 8 7 6 10 10 C 1.53093 * 109.47973 * 300.16097 * 3 2 1 11 11 C 1.53170 * 109.16766 * 297.61833 * 10 3 2 12 12 C 1.53169 * 109.03674 * 303.01888 * 11 10 3 13 13 C 1.53090 * 109.16636 * 56.98381 * 12 11 10 14 14 H 1.08996 * 109.48146 * 62.36652 * 13 12 11 15 15 C 1.50700 * 109.48536 * 182.39966 * 13 12 11 16 16 H 1.07998 * 119.99564 * 359.97438 * 15 13 12 17 17 C 1.37875 * 120.00053 * 179.97438 * 15 13 12 18 18 N 1.31515 * 120.00126 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99870 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47167 * 59.99924 * 19 17 15 21 21 H 1.48503 * 109.47251 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47444 * 300.00134 * 19 17 15 23 23 O 1.42905 * 109.47623 * 180.21614 * 3 2 1 24 24 H 1.08995 * 109.47326 * 52.12279 * 1 2 3 25 25 H 1.09000 * 109.47164 * 172.12051 * 1 2 3 26 26 H 1.09001 * 109.47265 * 292.11665 * 1 2 3 27 27 H 1.08998 * 109.46895 * 239.99858 * 2 1 3 28 28 H 1.09003 * 109.47026 * 119.99753 * 2 1 3 29 29 H 1.08999 * 111.12529 * 325.51395 * 6 4 3 30 30 H 1.09007 * 111.12907 * 89.67875 * 6 4 3 31 31 H 1.08992 * 110.31172 * 277.53484 * 7 6 4 32 32 H 1.08996 * 110.30978 * 155.35280 * 7 6 4 33 33 H 1.08999 * 109.83307 * 121.22284 * 9 8 7 34 34 H 1.09000 * 109.82895 * 242.20500 * 9 8 7 35 35 H 1.09004 * 109.51519 * 57.52808 * 10 3 2 36 36 H 1.09006 * 109.52003 * 177.64401 * 10 3 2 37 37 H 1.09002 * 109.53989 * 62.88499 * 11 10 3 38 38 H 1.09002 * 109.54563 * 183.15080 * 11 10 3 39 39 H 1.09008 * 109.52034 * 176.88332 * 12 11 10 40 40 H 1.08998 * 109.52718 * 297.01002 * 12 11 10 41 41 H 0.96999 * 119.99946 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5340 2.1625 1.2515 5 1 2.1183 3.0629 1.4418 6 6 1.5558 1.2186 2.4845 7 6 0.4176 1.8276 3.3414 8 8 -0.5762 2.2545 2.3960 9 6 0.0328 2.4988 1.1228 10 6 1.5264 2.1655 -1.2479 11 6 2.0860 1.4749 -2.4953 12 6 3.6157 1.4654 -2.4173 13 6 4.0487 0.7693 -1.1243 14 1 3.7118 -0.2672 -1.1391 15 6 5.5510 0.8080 -1.0114 16 1 6.1385 1.2811 -1.7843 17 6 6.1752 0.2394 0.0785 18 7 5.4597 -0.3363 1.0199 19 14 8.0374 0.2867 0.2181 20 1 8.4966 1.6988 0.2379 21 1 8.4572 -0.3885 1.4724 22 1 8.6390 -0.4131 -0.9454 23 8 3.4690 1.4427 -0.0051 24 1 -0.3634 0.6309 -0.8111 25 1 -0.3633 -1.0180 -0.1409 26 1 -0.3634 0.3869 0.9520 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3257 0.1925 2.1978 30 1 2.5120 1.2740 3.0050 31 1 0.7877 2.6795 3.9118 32 1 0.0035 1.0740 4.0111 33 1 -0.4251 1.8623 0.3656 34 1 -0.0892 3.5469 0.8495 35 1 0.4372 2.1278 -1.2683 36 1 1.8545 3.2048 -1.2276 37 1 1.7169 0.4503 -2.5413 38 1 1.7697 2.0182 -3.3858 39 1 4.0208 0.9269 -3.2741 40 1 3.9871 2.4901 -2.4223 41 1 5.8989 -0.7360 1.7869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309497721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = -104.366450 kcal Electronic energy + Delta-G solvation = -21065.715415 eV Core-core repulsion = 18138.138118 eV Total energy + Delta-G solvation = -2927.577297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75246 -39.43558 -35.88567 -34.24793 -34.18717 -31.97416 -31.07116 -29.75524 -27.19869 -26.11391 -24.14083 -23.36975 -22.62853 -21.31919 -19.29327 -18.63686 -18.17006 -17.11548 -16.59774 -16.52583 -16.07335 -15.77173 -15.52554 -14.99462 -14.53228 -14.47978 -13.92504 -13.62913 -13.37112 -13.29131 -12.89186 -12.82494 -12.74254 -12.55658 -12.44311 -12.30600 -12.13820 -12.02583 -11.77174 -11.69744 -11.48170 -11.17709 -10.95572 -10.74812 -10.42961 -10.17685 -9.53902 -8.11907 -6.30809 1.39624 1.41583 1.48768 2.40761 2.96535 3.00400 3.43861 3.63243 3.90288 4.00736 4.14258 4.17940 4.22010 4.24682 4.32520 4.39517 4.45828 4.55410 4.60744 4.69570 4.76805 4.78640 4.88808 4.90966 4.93766 5.06508 5.12336 5.14953 5.19874 5.21857 5.26619 5.30147 5.36878 5.48008 5.58732 5.66190 5.85181 6.03888 6.27698 6.71134 7.31137 7.45264 8.94404 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.007921 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.717838 B = 3533.839196 C = 4215.928492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.139 4.139 3 C 0.117 3.883 4 C -0.102 4.102 5 H 0.067 0.933 6 C -0.152 4.152 7 C 0.055 3.945 8 O -0.396 6.396 9 C 0.040 3.960 10 C -0.140 4.140 11 C -0.115 4.115 12 C -0.141 4.141 13 C 0.221 3.779 14 H -0.010 1.010 15 C -0.557 4.557 16 H 0.058 0.942 17 C 0.030 3.970 18 N -0.887 5.887 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.267 1.267 23 O -0.379 6.379 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 3.093 -0.549 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.077 3.923 4 C -0.121 4.121 5 H 0.086 0.914 6 C -0.189 4.189 7 C -0.021 4.021 8 O -0.316 6.316 9 C -0.035 4.035 10 C -0.178 4.178 11 C -0.152 4.152 12 C -0.179 4.179 13 C 0.166 3.834 14 H 0.007 0.993 15 C -0.594 4.594 16 H 0.076 0.924 17 C -0.173 4.173 18 N -0.524 5.524 19 Si 0.778 3.222 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.192 1.192 23 O -0.298 6.298 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.550 3.112 -0.199 11.963 hybrid contribution 1.725 -0.255 0.040 1.744 sum -9.824 2.857 -0.159 10.233 Atomic orbital electron populations 1.22275 0.93764 1.02376 1.03016 1.22060 0.97208 0.97279 1.01124 1.21265 0.83881 0.93699 0.93472 1.22498 0.96427 0.98390 0.94746 0.91446 1.23417 0.99151 1.00475 0.95903 1.23437 0.88045 0.98791 0.91833 1.88320 1.33859 1.88495 1.20880 1.23875 0.90802 1.01834 0.87017 1.22276 1.01432 0.99417 0.94636 1.21615 0.94601 1.00869 0.98162 1.22144 0.96360 1.00326 0.99036 1.19459 0.91488 0.89827 0.82673 0.99263 1.21431 0.91936 1.38538 1.07531 0.92383 1.25808 1.02486 0.93826 0.95155 1.70149 1.36705 1.35802 1.09726 0.85718 0.80494 0.78350 0.77645 1.19943 1.20742 1.19165 1.88254 1.16453 1.76996 1.48138 0.90616 0.92194 0.90768 0.93258 0.93170 0.89685 0.91927 0.91827 0.88156 0.87284 0.90907 0.88713 0.92192 0.92027 0.90182 0.92448 0.93457 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 7.86 71.98 0.57 -3.68 16 2 C -0.14 -5.09 3.87 30.59 0.12 -4.97 16 3 C 0.12 4.46 0.67 -10.77 -0.01 4.45 16 4 C -0.10 -3.48 2.74 -9.54 -0.03 -3.51 16 5 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 6 C -0.15 -5.10 5.81 32.05 0.19 -4.91 16 7 C 0.05 1.48 7.78 72.65 0.57 2.05 16 8 O -0.40 -11.35 10.85 -148.98 -1.62 -12.96 16 9 C 0.04 1.10 5.29 72.45 0.38 1.49 16 10 C -0.14 -4.46 4.12 30.68 0.13 -4.33 16 11 C -0.12 -3.77 5.72 30.71 0.18 -3.60 16 12 C -0.14 -5.90 5.36 30.68 0.16 -5.74 16 13 C 0.22 11.41 2.17 29.88 0.06 11.48 16 14 H -0.01 -0.57 6.34 -2.39 -0.02 -0.58 16 15 C -0.56 -31.82 8.79 25.60 0.23 -31.60 16 16 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 17 C 0.03 1.73 5.40 84.65 0.46 2.18 16 18 N -0.89 -52.38 12.84 21.45 0.28 -52.11 16 19 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 O -0.38 -19.22 9.27 -148.98 -1.38 -20.60 16 24 H 0.08 1.76 5.39 -2.39 -0.01 1.74 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.98 4.37 -2.39 -0.01 1.97 16 27 H 0.05 1.96 4.98 -2.39 -0.01 1.95 16 28 H 0.05 2.09 5.98 -2.39 -0.01 2.07 16 29 H 0.08 2.93 4.64 -2.39 -0.01 2.92 16 30 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.11 2.71 2.99 -2.39 -0.01 2.71 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.37 4.86 -2.38 -0.01 2.36 16 36 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -64.08 293.04 3.33 -60.75 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.02 Total: 19.32 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 3.00 Total: -40.69 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.28 Total: -52.11 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -3.00 Total: -33.56 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -64.08 3.33 -60.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.614 kcal (2) G-P(sol) polarization free energy of solvation -64.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds