Wall clock time and date at job start Mon Mar 30 2020 06:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47335 * 2 1 4 4 C 1.52995 * 109.48236 * 182.51680 * 3 2 1 5 5 H 1.09006 * 110.74941 * 182.58758 * 4 3 2 6 6 C 1.55310 * 110.84718 * 306.28218 * 4 3 2 7 7 C 1.54945 * 100.93944 * 152.32367 * 6 4 3 8 8 O 1.43640 * 105.13696 * 323.55531 * 7 6 4 9 9 C 1.43242 * 109.97338 * 24.43004 * 8 7 6 10 10 C 1.53102 * 109.47681 * 62.48188 * 3 2 1 11 11 C 1.53176 * 109.15989 * 182.40934 * 10 3 2 12 12 C 1.53179 * 109.04432 * 56.97607 * 11 10 3 13 13 C 1.53080 * 109.16469 * 303.03290 * 12 11 10 14 14 H 1.09007 * 109.48309 * 297.60537 * 13 12 11 15 15 C 1.50699 * 109.48329 * 177.58506 * 13 12 11 16 16 H 1.07998 * 120.00114 * 0.02562 * 15 13 12 17 17 C 1.37882 * 120.00309 * 180.29978 * 15 13 12 18 18 N 1.31515 * 119.99859 * 359.72198 * 17 15 13 19 19 Si 1.86792 * 120.00093 * 179.72083 * 17 15 13 20 20 H 1.48503 * 109.47406 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47109 * 119.99919 * 19 17 15 22 22 H 1.48493 * 109.47418 * 240.00025 * 19 17 15 23 23 O 1.42904 * 109.42749 * 57.59406 * 13 12 11 24 24 H 1.08997 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47111 * 300.00273 * 1 2 3 26 26 H 1.09006 * 109.47026 * 60.00115 * 1 2 3 27 27 H 1.09003 * 109.47401 * 240.00228 * 2 1 3 28 28 H 1.08999 * 109.47172 * 120.00232 * 2 1 3 29 29 H 1.09000 * 111.12644 * 270.24203 * 6 4 3 30 30 H 1.08997 * 111.12472 * 34.40532 * 6 4 3 31 31 H 1.08993 * 110.30958 * 204.63921 * 7 6 4 32 32 H 1.09004 * 110.30928 * 82.47013 * 7 6 4 33 33 H 1.08994 * 109.83177 * 238.77327 * 9 8 7 34 34 H 1.09001 * 109.83050 * 117.79699 * 9 8 7 35 35 H 1.09000 * 109.51975 * 302.31733 * 10 3 2 36 36 H 1.08996 * 109.52170 * 62.44058 * 10 3 2 37 37 H 1.09006 * 109.53926 * 176.84460 * 11 10 3 38 38 H 1.08992 * 109.54680 * 297.10942 * 11 10 3 39 39 H 1.09002 * 109.52590 * 183.12035 * 12 11 10 40 40 H 1.09004 * 109.51513 * 62.94015 * 12 11 10 41 41 H 0.97000 * 120.00059 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5687 1.4432 -0.0633 5 1 3.9566 2.4609 -0.0184 6 6 4.1693 0.5675 1.0701 7 6 5.5076 0.1282 0.4245 8 8 5.2078 -0.0627 -0.9672 9 6 4.0663 0.7211 -1.3339 10 6 1.5815 2.1461 1.2801 11 6 2.0444 3.6058 1.2449 12 6 1.4909 4.2754 -0.0167 13 6 1.9526 3.4895 -1.2466 14 1 3.0406 3.5169 -1.3082 15 6 1.3634 4.1074 -2.4883 16 1 0.7239 4.9741 -2.4089 17 6 1.6360 3.5629 -3.7254 18 7 2.4148 2.5076 -3.8222 19 14 0.8993 4.3242 -5.2639 20 1 0.0660 5.4942 -4.8870 21 1 1.9906 4.7655 -6.1691 22 1 0.0560 3.3186 -5.9587 23 8 1.5157 2.1334 -1.1357 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 4.3423 1.1558 1.9713 30 1 3.5337 -0.2926 1.2806 31 1 5.8534 -0.8052 0.8685 32 1 6.2600 0.9075 0.5460 33 1 3.2812 0.0721 -1.7217 34 1 4.3484 1.4544 -2.0894 35 1 0.4941 2.1102 1.3459 36 1 2.0155 1.6461 2.1460 37 1 1.6733 4.1273 2.1272 38 1 3.1336 3.6427 1.2291 39 1 1.8609 5.2988 -0.0783 40 1 0.4016 4.2828 0.0230 41 1 2.6063 2.1243 -4.6924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309497731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:47 Heat of formation + Delta-G solvation = -106.052408 kcal Electronic energy + Delta-G solvation = -21172.168702 eV Core-core repulsion = 18244.518296 eV Total energy + Delta-G solvation = -2927.650406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98144 -37.65690 -34.12686 -32.64068 -32.07089 -31.12854 -28.97202 -28.38227 -25.51068 -23.86513 -22.31454 -21.88953 -21.48889 -20.27232 -17.64630 -16.59485 -16.15169 -15.44318 -14.82845 -14.77325 -14.28858 -14.09407 -13.87265 -13.62282 -13.41178 -12.63769 -12.44462 -12.34235 -12.06840 -11.61341 -11.24540 -11.18014 -11.03612 -10.99326 -10.87113 -10.72805 -10.51545 -10.36620 -10.26797 -10.18701 -9.90478 -9.64113 -9.35140 -8.82621 -8.76514 -8.43717 -7.80141 -6.00479 -4.11147 3.30400 3.39129 3.42099 4.42042 4.43813 4.78241 5.10366 5.14473 5.34516 5.42449 5.47311 5.49478 5.64859 5.68440 5.78818 5.82629 5.86043 5.99569 6.03247 6.07289 6.19513 6.21624 6.26540 6.33956 6.41556 6.48578 6.53945 6.62479 6.79590 6.82894 6.84701 6.90766 6.92993 7.06375 7.10957 7.52958 7.60386 7.91576 8.30741 8.80035 9.15318 9.58653 11.06572 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.008877 C = 0.007765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.759352 B = 3153.286325 C = 3605.097862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.126 3.874 4 C -0.135 4.135 5 H 0.084 0.916 6 C -0.157 4.157 7 C 0.053 3.947 8 O -0.397 6.397 9 C 0.066 3.934 10 C -0.139 4.139 11 C -0.122 4.122 12 C -0.144 4.144 13 C 0.218 3.782 14 H 0.016 0.984 15 C -0.527 4.527 16 H 0.062 0.938 17 C 0.081 3.919 18 N -0.855 5.855 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.283 1.283 23 O -0.339 6.339 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -3.750 9.999 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C 0.085 3.915 4 C -0.154 4.154 5 H 0.102 0.898 6 C -0.194 4.194 7 C -0.024 4.024 8 O -0.317 6.317 9 C -0.009 4.009 10 C -0.176 4.176 11 C -0.159 4.159 12 C -0.182 4.182 13 C 0.163 3.837 14 H 0.034 0.966 15 C -0.564 4.564 16 H 0.080 0.920 17 C -0.125 4.125 18 N -0.491 5.491 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 O -0.258 6.258 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.627 -4.083 9.594 10.553 hybrid contribution -0.312 0.733 -0.431 0.906 sum 1.316 -3.350 9.163 9.844 Atomic orbital electron populations 1.21695 0.95772 1.00095 1.02622 1.21606 0.96372 0.95383 1.01418 1.21023 0.89686 0.92392 0.88424 1.23207 0.98087 0.99830 0.94246 0.89790 1.23437 0.96939 1.00397 0.98649 1.23237 0.96446 0.99951 0.82774 1.88350 1.49691 1.68997 1.24631 1.23209 0.86885 0.94461 0.96357 1.22189 1.01312 0.96142 0.97988 1.21653 1.00118 0.95723 0.98411 1.22262 1.00552 0.99435 0.95991 1.19685 0.94478 0.78550 0.91006 0.96643 1.21022 1.32640 1.12839 0.89902 0.92031 1.25006 0.94272 0.94380 0.98870 1.69988 1.34530 1.20598 1.23979 0.86615 0.79130 0.79299 0.83342 1.19820 1.21045 1.20942 1.88404 1.69718 1.26383 1.41255 0.94079 0.93362 0.91178 0.91165 0.92183 0.90820 0.90119 0.90805 0.93084 0.90420 0.89707 0.91492 0.92795 0.93428 0.92712 0.92739 0.92624 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.45 37.16 0.35 -2.02 16 2 C -0.11 -1.89 4.54 -26.73 -0.12 -2.01 16 3 C 0.13 2.37 0.24 -90.57 -0.02 2.34 16 4 C -0.13 -2.47 1.57 -88.68 -0.14 -2.61 16 5 H 0.08 1.65 5.14 -51.93 -0.27 1.38 16 6 C -0.16 -2.28 5.59 -24.48 -0.14 -2.42 16 7 C 0.05 0.79 7.78 38.18 0.30 1.09 16 8 O -0.40 -7.64 11.36 -35.23 -0.40 -8.04 16 9 C 0.07 1.37 6.93 37.88 0.26 1.63 16 10 C -0.14 -2.32 4.56 -26.59 -0.12 -2.44 16 11 C -0.12 -2.09 5.72 -26.55 -0.15 -2.24 16 12 C -0.14 -2.99 5.36 -26.60 -0.14 -3.13 16 13 C 0.22 5.34 2.18 -27.84 -0.06 5.27 16 14 H 0.02 0.42 6.42 -51.92 -0.33 0.08 16 15 C -0.53 -14.34 8.80 -34.44 -0.30 -14.65 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 17 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 18 N -0.85 -23.82 12.83 55.43 0.71 -23.11 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 O -0.34 -8.04 8.19 -35.23 -0.29 -8.32 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.73 6.44 -51.93 -0.33 0.40 16 26 H 0.07 1.34 7.62 -51.93 -0.40 0.94 16 27 H 0.07 1.30 6.05 -51.93 -0.31 0.99 16 28 H 0.06 0.88 6.11 -51.93 -0.32 0.56 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.12 5.65 -51.93 -0.29 0.82 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.70 5.74 -51.93 -0.30 1.40 16 34 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 35 H 0.07 1.14 6.38 -51.93 -0.33 0.80 16 36 H 0.05 0.78 7.43 -51.93 -0.39 0.40 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.93 6.58 -51.93 -0.34 0.58 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -28.20 302.11 -7.36 -35.56 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.54 Total: 2.37 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -0.38 Total: -19.06 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.71 Total: -23.11 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.69 Total: -16.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.20 -7.36 -35.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.489 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds