Wall clock time and date at job start Mon Mar 30 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00165 * 2 1 4 4 C 1.53000 * 110.01433 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.54993 * 182.18002 * 4 3 2 6 6 C 1.54994 * 110.62326 * 59.29487 * 4 3 2 7 7 C 1.54806 * 102.09486 * 204.47420 * 6 4 3 8 8 C 1.54103 * 104.18845 * 20.88159 * 7 6 4 9 9 C 1.52999 * 109.88145 * 242.45742 * 8 7 6 10 10 C 1.50694 * 109.88042 * 121.45170 * 8 7 6 11 11 H 1.08002 * 120.00179 * 0.30610 * 10 8 7 12 12 C 1.37879 * 120.00472 * 180.30928 * 10 8 7 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 O 1.43745 * 107.41881 * 1.95298 * 8 7 6 19 19 C 1.54265 * 110.03190 * 301.38987 * 3 2 1 20 20 C 1.54959 * 104.16121 * 95.75428 * 19 3 2 21 21 C 1.54897 * 102.77703 * 37.88813 * 20 19 3 22 22 C 1.53865 * 110.03429 * 58.60840 * 3 2 1 23 23 H 1.08999 * 109.46931 * 300.00355 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99985 * 1 2 3 25 25 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.09001 * 110.90635 * 86.27871 * 6 4 3 27 27 H 1.08998 * 110.93767 * 322.69062 * 6 4 3 28 28 H 1.08998 * 110.49055 * 262.20727 * 7 6 4 29 29 H 1.08994 * 110.49055 * 139.55559 * 7 6 4 30 30 H 1.08998 * 109.46670 * 299.69058 * 9 8 7 31 31 H 1.08996 * 109.47020 * 59.69099 * 9 8 7 32 32 H 1.08999 * 109.47131 * 179.69049 * 9 8 7 33 33 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 34 34 H 1.09003 * 110.48924 * 214.40430 * 19 3 2 35 35 H 1.09005 * 110.48844 * 337.04262 * 19 3 2 36 36 H 1.09000 * 110.72273 * 279.57440 * 20 19 3 37 37 H 1.08998 * 110.92815 * 156.29467 * 20 19 3 38 38 H 1.08995 * 110.48505 * 203.40573 * 21 20 19 39 39 H 1.08997 * 110.59550 * 80.81461 * 21 20 19 40 40 H 1.09000 * 110.03218 * 359.95068 * 22 3 2 41 41 H 1.08995 * 110.03432 * 121.33405 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5366 1.1990 -0.0006 5 1 3.9892 2.1899 0.0382 6 6 4.0292 0.4224 -1.2482 7 6 5.3986 -0.1207 -0.7725 8 6 5.3060 -0.0837 0.7653 9 6 6.3622 0.8699 1.3274 10 6 5.5154 -1.4672 1.3247 11 1 5.7021 -2.2965 0.6585 12 6 5.4686 -1.6745 2.6870 13 7 5.2416 -0.6646 3.4983 14 14 5.7275 -3.3896 3.3804 15 1 5.6298 -3.3448 4.8614 16 1 4.6876 -4.3031 2.8426 17 1 7.0717 -3.8843 2.9882 18 8 3.9914 0.3874 1.1061 19 6 1.5356 2.0952 -1.2372 20 6 0.3353 2.9267 -0.7186 21 6 0.7910 3.3354 0.7044 22 6 1.5368 2.0932 1.2340 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 4.1508 1.0915 -2.1000 27 1 3.3500 -0.3947 -1.4917 28 1 6.2063 0.5226 -1.1215 29 1 5.5458 -1.1427 -1.1213 30 1 7.3546 0.5231 1.0396 31 1 6.1971 1.8707 0.9285 32 1 6.2872 0.8951 2.4145 33 1 5.2083 -0.8105 4.4567 34 1 2.3274 2.7521 -1.5974 35 1 1.2162 1.4135 -2.0256 36 1 -0.5667 2.3163 -0.6749 37 1 0.1741 3.8074 -1.3403 38 1 -0.0718 3.5587 1.3318 39 1 1.4619 4.1933 0.6605 40 1 0.8630 1.4801 1.8324 41 1 2.3943 2.3991 1.8333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319410985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:07 Heat of formation + Delta-G solvation = -115.108462 kcal Electronic energy + Delta-G solvation = -20842.498458 eV Core-core repulsion = 17914.455353 eV Total energy + Delta-G solvation = -2928.043106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16453 -39.33789 -36.06783 -34.88915 -32.66184 -32.03363 -29.74834 -29.27793 -27.37840 -26.99616 -25.31355 -22.50751 -21.70535 -21.01067 -20.43316 -18.65454 -17.73675 -16.93667 -16.52423 -16.16937 -16.11782 -15.39329 -15.18478 -14.89222 -14.54688 -14.28198 -13.78677 -13.71337 -13.31119 -13.08652 -12.91496 -12.77776 -12.62055 -12.48823 -12.29444 -12.09513 -11.99693 -11.88491 -11.81988 -11.71761 -11.44747 -11.19465 -11.02570 -10.83413 -10.54475 -10.23554 -9.75807 -8.00901 -6.22079 1.39643 1.42390 1.48965 2.44409 2.99061 3.09593 3.48379 3.67079 3.78742 3.99364 4.15446 4.19929 4.32421 4.41284 4.47245 4.58335 4.61917 4.64245 4.67919 4.72189 4.80199 4.84148 4.90430 4.94377 4.97198 5.05140 5.09105 5.10346 5.18861 5.26526 5.33692 5.40079 5.43766 5.46893 5.49980 5.68943 6.16041 6.39327 6.52737 6.67011 7.15364 7.51277 9.00234 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.007292 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.548172 B = 3838.746058 C = 4092.858396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.393 6.393 3 C 0.124 3.876 4 C 0.073 3.927 5 H 0.062 0.938 6 C -0.130 4.130 7 C -0.140 4.140 8 C 0.210 3.790 9 C -0.140 4.140 10 C -0.542 4.542 11 H 0.052 0.948 12 C 0.031 3.969 13 N -0.889 5.889 14 Si 0.948 3.052 15 H -0.283 1.283 16 H -0.278 1.278 17 H -0.266 1.266 18 O -0.366 6.366 19 C -0.140 4.140 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.147 4.147 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.027 0.973 32 H 0.058 0.942 33 H 0.256 0.744 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 7.969 -9.457 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.312 6.312 3 C 0.084 3.916 4 C 0.014 3.986 5 H 0.079 0.921 6 C -0.167 4.167 7 C -0.178 4.178 8 C 0.172 3.828 9 C -0.198 4.198 10 C -0.580 4.580 11 H 0.070 0.930 12 C -0.171 4.171 13 N -0.526 5.526 14 Si 0.773 3.227 15 H -0.208 1.208 16 H -0.204 1.204 17 H -0.191 1.191 18 O -0.285 6.285 19 C -0.177 4.177 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.185 4.185 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.397 7.804 -9.063 15.210 hybrid contribution 0.366 -0.902 0.790 1.254 sum -9.030 6.902 -8.273 14.058 Atomic orbital electron populations 1.23003 0.81039 1.02725 1.00817 1.88083 1.20371 1.27921 1.94869 1.22209 0.91266 0.83127 0.94978 1.23216 0.92371 0.94635 0.88351 0.92050 1.22938 0.96154 0.99885 0.97750 1.22981 0.97446 1.00547 0.96780 1.19713 0.81042 0.92062 0.89934 1.22041 0.98109 0.96523 1.03157 1.21433 1.50204 0.94175 0.92195 0.93030 1.25731 0.93739 0.99985 0.97598 1.70099 1.47927 1.31652 1.02934 0.85797 0.78809 0.80895 0.77162 1.20804 1.20363 1.19080 1.89287 1.33606 1.66536 1.39116 1.22924 0.99416 0.99046 0.96356 1.22672 0.97139 1.00302 0.95714 1.22359 0.99841 0.96262 0.96991 1.22682 1.00056 0.97881 0.97890 0.94010 0.91703 0.89917 0.89043 0.91871 0.91235 0.92662 0.94295 0.95392 0.92305 0.93441 0.89643 0.90145 0.90514 0.88944 0.90421 0.90887 0.92387 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.42 113.37 1.07 1.63 16 2 O -0.39 -15.29 9.42 -139.21 -1.31 -16.60 16 3 C 0.12 4.28 0.65 -10.07 -0.01 4.27 16 4 C 0.07 2.98 2.19 31.28 0.07 3.05 16 5 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 6 C -0.13 -4.88 5.99 31.89 0.19 -4.69 16 7 C -0.14 -6.05 6.26 31.58 0.20 -5.85 16 8 C 0.21 11.07 0.74 -11.17 -0.01 11.06 16 9 C -0.14 -7.12 8.39 71.98 0.60 -6.52 16 10 C -0.54 -31.74 8.26 25.60 0.21 -31.53 16 11 H 0.05 2.98 7.33 -2.91 -0.02 2.96 16 12 C 0.03 1.84 5.26 84.66 0.45 2.28 16 13 N -0.89 -53.95 10.93 21.45 0.23 -53.72 16 14 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 O -0.37 -19.76 9.76 -139.21 -1.36 -21.12 16 19 C -0.14 -3.43 4.84 31.69 0.15 -3.28 16 20 C -0.12 -2.35 6.38 31.91 0.20 -2.14 16 21 C -0.12 -2.71 6.83 31.67 0.22 -2.49 16 22 C -0.15 -4.95 5.58 31.32 0.17 -4.78 16 23 H 0.04 1.13 6.30 -2.39 -0.02 1.12 16 24 H 0.06 1.44 5.45 -2.39 -0.01 1.42 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.06 2.52 7.42 -2.39 -0.02 2.50 16 28 H 0.07 2.67 7.70 -2.39 -0.02 2.65 16 29 H 0.05 2.44 7.40 -2.39 -0.02 2.42 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 3.35 6.03 -2.39 -0.01 3.33 16 33 H 0.26 14.89 8.31 -92.70 -0.77 14.11 16 34 H 0.08 1.93 7.85 -2.39 -0.02 1.91 16 35 H 0.08 1.87 7.57 -2.38 -0.02 1.86 16 36 H 0.08 1.37 6.06 -2.39 -0.01 1.35 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 2.06 6.31 -2.39 -0.02 2.04 16 41 H 0.05 1.88 7.63 -2.39 -0.02 1.86 16 Total: -1.00 -69.24 308.26 4.10 -65.14 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.99 Total: 17.42 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 3.52 Total: -38.98 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.23 Total: -53.72 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -2.67 Total: -37.72 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -69.24 4.10 -65.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319410985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.972 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds