Wall clock time and date at job start Mon Mar 30 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99575 * 2 1 4 4 H 1.48499 * 109.47125 * 269.99729 * 3 2 1 5 5 H 1.48494 * 109.47316 * 30.00065 * 3 2 1 6 6 H 1.48503 * 109.46730 * 149.99785 * 3 2 1 7 7 C 1.37873 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99980 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00076 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47307 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.46993 * 179.97438 * 10 9 7 12 12 C 1.42907 * 113.99823 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46808 * 180.02562 * 12 11 10 14 14 H 1.09008 * 109.86984 * 305.99808 * 13 12 11 15 15 C 1.54233 * 109.87500 * 185.00197 * 13 12 11 16 16 C 1.55672 * 103.94138 * 240.13503 * 15 13 12 17 17 H 1.09003 * 112.62701 * 217.04362 * 16 15 13 18 18 C 1.53020 * 106.60245 * 92.78938 * 16 15 13 19 19 C 1.52657 * 110.77933 * 196.67117 * 18 16 15 20 20 C 1.53260 * 108.61777 * 62.06095 * 19 18 16 21 21 C 1.51189 * 108.65516 * 297.14201 * 20 19 18 22 22 C 1.51061 * 112.30807 * 58.22817 * 21 20 19 23 23 H 1.09002 * 109.01335 * 186.68119 * 22 21 20 24 24 O 1.43400 * 112.28951 * 65.86510 * 22 21 20 25 25 H 0.96995 * 120.00268 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47392 * 59.99120 * 9 7 2 27 27 H 1.09008 * 109.46623 * 299.99867 * 9 7 2 28 28 H 1.09006 * 109.46730 * 59.99949 * 10 9 7 29 29 H 1.08995 * 109.47459 * 300.00017 * 10 9 7 30 30 H 1.08993 * 109.46948 * 60.00368 * 12 11 10 31 31 H 1.09001 * 109.47072 * 299.99956 * 12 11 10 32 32 H 1.08999 * 110.53654 * 121.52114 * 15 13 12 33 33 H 1.08997 * 110.64881 * 358.80452 * 15 13 12 34 34 H 1.08996 * 109.21246 * 317.01175 * 18 16 15 35 35 H 1.09006 * 109.21162 * 76.33921 * 18 16 15 36 36 H 1.09006 * 109.60967 * 181.79751 * 19 18 16 37 37 H 1.09004 * 109.61393 * 302.31626 * 19 18 16 38 38 H 1.09004 * 109.68847 * 56.33734 * 20 19 18 39 39 H 1.08998 * 109.68842 * 176.87264 * 20 19 18 40 40 H 1.09000 * 108.53337 * 297.52120 * 21 20 19 41 41 H 1.09001 * 108.70330 * 179.05223 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 8 5.4506 -2.6364 -0.0001 12 6 6.0319 -3.9419 -0.0008 13 6 7.5570 -3.8210 -0.0002 14 1 7.8791 -3.1904 -0.8290 15 6 8.1940 -5.2198 -0.1274 16 6 9.0426 -5.3649 1.1696 17 1 9.9810 -5.8929 0.9999 18 6 8.1497 -6.0578 2.2011 19 6 8.7149 -5.8867 3.6088 20 6 8.7397 -4.3922 3.9478 21 6 9.6718 -3.6932 2.9843 22 6 9.2585 -3.8866 1.5443 23 1 10.0261 -3.4655 0.8949 24 8 8.0036 -3.2584 1.2496 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6806 0.8904 27 1 3.8752 -0.6795 -0.8896 28 1 3.6586 -3.1501 -0.8904 29 1 3.6580 -3.1505 0.8896 30 1 5.7103 -4.4823 -0.8911 31 1 5.7103 -4.4833 0.8889 32 1 8.8322 -5.2706 -1.0095 33 1 7.4242 -5.9904 -0.1688 34 1 7.1508 -5.6235 2.1603 35 1 8.0880 -7.1204 1.9660 36 1 8.0826 -6.4135 4.3235 37 1 9.7278 -6.2875 3.6476 38 1 7.7383 -3.9750 3.8417 39 1 9.0888 -4.2535 4.9710 40 1 10.6767 -4.0918 3.1237 41 1 9.6770 -2.6276 3.2140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379227333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:28 Heat of formation + Delta-G solvation = -119.806415 kcal Electronic energy + Delta-G solvation = -19323.803275 eV Core-core repulsion = 16395.556451 eV Total energy + Delta-G solvation = -2928.246824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64240 -37.39777 -35.90986 -33.27198 -32.91948 -30.83499 -30.08345 -29.36491 -25.67162 -24.23380 -22.74882 -21.98306 -21.16433 -20.37015 -19.52973 -17.12380 -16.69360 -16.21344 -15.42850 -15.39303 -14.87783 -14.65068 -14.43096 -14.08061 -13.58464 -13.33838 -13.01059 -12.61316 -12.44503 -12.22332 -12.04169 -11.74729 -11.73183 -11.48193 -11.13413 -11.03887 -10.87194 -10.76580 -10.30822 -10.25357 -10.16612 -9.90929 -9.77042 -9.46204 -9.21226 -8.92455 -8.51886 -6.04281 -4.03491 3.35813 3.42426 3.50852 3.73792 4.12537 4.26384 4.44255 4.48517 4.67233 4.80188 4.90844 5.00206 5.08560 5.17156 5.27318 5.30570 5.31375 5.38584 5.40558 5.48121 5.55404 5.61280 5.69732 5.72535 5.85737 5.98189 6.03399 6.06670 6.08073 6.08766 6.18947 6.23390 6.32348 6.71992 6.98787 7.17799 7.43493 7.72798 7.96030 8.50980 8.97778 9.57577 11.08639 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.032154 B = 0.004080 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.605136 B = 6861.525480 C = 7023.742328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.009 4.009 10 C 0.076 3.924 11 O -0.388 6.388 12 C 0.064 3.936 13 C 0.080 3.920 14 H 0.075 0.925 15 C -0.149 4.149 16 C -0.116 4.116 17 H 0.092 0.908 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.109 4.109 22 C 0.080 3.920 23 H 0.056 0.944 24 O -0.348 6.348 25 H 0.264 0.736 26 H 0.025 0.975 27 H 0.019 0.981 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.730 -13.120 3.759 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.047 4.047 10 C 0.001 3.999 11 O -0.307 6.307 12 C -0.013 4.013 13 C 0.022 3.978 14 H 0.093 0.907 15 C -0.187 4.187 16 C -0.134 4.134 17 H 0.110 0.890 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.147 4.147 22 C 0.022 3.978 23 H 0.074 0.926 24 O -0.267 6.267 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.552 -12.661 3.882 25.295 hybrid contribution 0.210 0.472 -0.274 0.585 sum 21.761 -12.189 3.608 25.202 Atomic orbital electron populations 1.69906 1.06286 1.27043 1.50883 1.24950 0.94739 0.99206 0.94272 0.86751 0.80540 0.83273 0.78682 1.20166 1.21309 1.18682 1.20949 0.88846 0.94734 1.51564 0.90960 1.19530 0.96474 0.91164 0.97492 1.22629 0.77611 1.00797 0.98892 1.87939 1.21893 1.25612 1.95299 1.22580 0.91592 0.87049 1.00072 1.22802 0.93714 0.93360 0.87947 0.90673 1.23255 0.99807 0.97267 0.98384 1.22726 0.98801 0.96867 0.95024 0.88962 1.21534 0.99611 0.99741 0.94121 1.21521 1.00851 0.96641 0.96582 1.21248 1.01095 0.95202 0.98245 1.20755 0.99211 1.01775 0.92928 1.22225 0.87735 0.91229 0.96643 0.92599 1.89008 1.35802 1.63043 1.38845 0.92620 0.95682 0.96230 0.94234 0.94118 0.92788 0.93229 0.90502 0.90022 0.91161 0.92109 0.91909 0.92187 0.90965 0.91894 0.91073 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 7 C -0.52 -15.46 9.66 -34.44 -0.33 -15.79 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 10 C 0.08 1.69 5.88 37.16 0.22 1.91 16 11 O -0.39 -8.01 10.34 -36.70 -0.38 -8.39 16 12 C 0.06 1.00 5.40 37.16 0.20 1.20 16 13 C 0.08 1.07 3.58 -26.09 -0.09 0.98 16 14 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 15 C -0.15 -1.44 5.97 -24.66 -0.15 -1.58 16 16 C -0.12 -1.05 3.65 -88.65 -0.32 -1.37 16 17 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 18 C -0.11 -1.05 4.76 -26.90 -0.13 -1.17 16 19 C -0.12 -1.02 5.93 -26.77 -0.16 -1.17 16 20 C -0.12 -1.18 5.87 -27.51 -0.16 -1.34 16 21 C -0.11 -1.06 5.48 -28.62 -0.16 -1.22 16 22 C 0.08 0.88 3.07 -27.17 -0.08 0.79 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 O -0.35 -5.25 10.65 -36.70 -0.39 -5.64 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.02 0.66 7.20 -51.93 -0.37 0.29 16 27 H 0.02 0.50 7.57 -51.92 -0.39 0.11 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.75 7.52 -51.93 -0.39 0.36 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.73 7.32 -51.93 -0.38 0.35 16 34 H 0.07 0.80 7.13 -51.93 -0.37 0.43 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -32.55 319.28 -8.65 -41.21 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -7.41 Total: -5.20 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.39 Total: -17.14 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 0.77 Total: -27.50 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.77 Total: -14.03 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.55 -8.65 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379227333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.600 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds