Wall clock time and date at job start Mon Mar 30 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46878 * 299.99903 * 3 2 1 6 6 H 1.48500 * 109.47189 * 59.99535 * 3 2 1 7 7 C 1.37881 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47077 * 179.97438 * 9 7 2 11 11 O 1.42896 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.42899 * 114.00287 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47354 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.83288 * 305.62978 * 13 12 11 15 15 C 1.54001 * 109.79502 * 184.80492 * 13 12 11 16 16 C 1.54423 * 104.22332 * 239.20858 * 15 13 12 17 17 H 1.08999 * 107.03575 * 97.29723 * 16 15 13 18 18 C 1.49399 * 111.25407 * 215.24714 * 16 15 13 19 19 C 1.50692 * 118.04274 * 96.13124 * 18 16 15 20 20 C 1.52493 * 112.46650 * 35.57350 * 19 18 16 21 21 C 1.53308 * 107.92718 * 302.62326 * 20 19 18 22 22 C 1.52116 * 103.96056 * 343.12737 * 16 15 13 23 23 H 1.08995 * 109.78088 * 147.85704 * 22 16 15 24 24 O 1.43275 * 109.79519 * 66.45845 * 13 12 11 25 25 H 0.97000 * 119.99938 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46725 * 59.99903 * 9 7 2 27 27 H 1.08996 * 109.47157 * 299.99652 * 9 7 2 28 28 H 1.09000 * 109.46712 * 59.99865 * 10 9 7 29 29 H 1.08996 * 109.47085 * 299.99992 * 10 9 7 30 30 H 1.08998 * 109.46972 * 59.99772 * 12 11 10 31 31 H 1.09003 * 109.46587 * 300.00281 * 12 11 10 32 32 H 1.08999 * 110.48067 * 357.89151 * 15 13 12 33 33 H 1.09000 * 110.48076 * 120.52668 * 15 13 12 34 34 H 1.09007 * 107.72466 * 333.96145 * 18 16 15 35 35 H 1.09000 * 107.69507 * 218.27671 * 18 16 15 36 36 H 1.09004 * 108.88384 * 274.80269 * 19 18 16 37 37 H 1.09000 * 108.80298 * 156.29142 * 19 18 16 38 38 H 1.08997 * 109.76932 * 183.01517 * 20 19 18 39 39 H 1.08996 * 109.80804 * 62.25555 * 20 19 18 40 40 H 1.08997 * 109.69302 * 308.46410 * 21 20 19 41 41 H 1.08989 * 109.72513 * 187.89124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 8 1.5306 -4.8997 -0.0001 12 6 2.3705 -6.0558 0.0005 13 6 1.5032 -7.3162 0.0004 14 1 0.8012 -7.2821 0.8335 15 6 2.3970 -8.5643 0.1223 16 6 2.0847 -9.3805 -1.1508 17 1 2.8634 -9.1490 -1.8776 18 6 2.1257 -10.8486 -0.8766 19 6 0.8257 -11.5504 -0.5798 20 6 -0.3398 -10.9822 -1.3824 21 6 -0.4432 -9.4851 -1.0690 22 6 0.7784 -8.7871 -1.6559 23 1 0.7456 -8.8400 -2.7441 24 8 0.7850 -7.4109 -1.2357 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6045 -0.8894 30 1 2.9991 -6.0478 0.8909 31 1 3.0004 -6.0476 -0.8891 32 1 3.4489 -8.2795 0.1442 33 1 2.1365 -9.1343 1.0142 34 1 2.7909 -11.0092 -0.0281 35 1 2.5753 -11.3349 -1.7423 36 1 0.6048 -11.4494 0.4828 37 1 0.9353 -12.6085 -0.8178 38 1 -1.2641 -11.4836 -1.0957 39 1 -0.1586 -11.1242 -2.4478 40 1 -0.4675 -9.3367 0.0106 41 1 -1.3495 -9.0773 -1.5163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379227334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:30 Heat of formation + Delta-G solvation = -123.745269 kcal Electronic energy + Delta-G solvation = -18987.571660 eV Core-core repulsion = 16059.154034 eV Total energy + Delta-G solvation = -2928.417626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60528 -37.34906 -36.11385 -33.26205 -32.88271 -30.72455 -29.99683 -29.30719 -25.52107 -24.14636 -23.05659 -22.49701 -21.22454 -20.57536 -18.97470 -16.77910 -16.23169 -16.06025 -15.84842 -15.28070 -14.98241 -14.62054 -14.52225 -14.32360 -13.60415 -13.35808 -13.04775 -12.57571 -12.23012 -12.09136 -12.01193 -11.89036 -11.65155 -11.44527 -11.10741 -10.98345 -10.79131 -10.58301 -10.46656 -10.34792 -10.30370 -10.14116 -9.43869 -9.35213 -9.12633 -8.83017 -8.31545 -5.98717 -4.02156 3.32700 3.39368 3.43572 3.80483 4.18745 4.22793 4.40189 4.50631 4.62128 4.75729 4.84208 4.88928 4.99785 5.19189 5.27282 5.32590 5.37115 5.41037 5.47408 5.52633 5.59185 5.69510 5.70571 5.74338 5.78142 5.88252 5.93661 6.00032 6.13617 6.15598 6.22241 6.32344 6.36582 6.95421 7.13485 7.61841 7.86267 7.88522 8.18417 8.41566 9.04820 9.61140 11.13058 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.057395 B = 0.003298 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.734348 B = 8487.957426 C = 8782.812236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.069 3.931 11 O -0.384 6.384 12 C 0.061 3.939 13 C 0.082 3.918 14 H 0.075 0.925 15 C -0.145 4.145 16 C -0.110 4.110 17 H 0.075 0.925 18 C -0.102 4.102 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.138 4.138 22 C 0.086 3.914 23 H 0.092 0.908 24 O -0.352 6.352 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -24.456 -1.229 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.303 6.303 12 C -0.016 4.016 13 C 0.025 3.975 14 H 0.093 0.907 15 C -0.183 4.183 16 C -0.129 4.129 17 H 0.093 0.907 18 C -0.140 4.140 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.176 4.176 22 C 0.028 3.972 23 H 0.110 0.890 24 O -0.271 6.271 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.264 -24.162 -1.336 24.419 hybrid contribution 0.932 0.824 0.146 1.252 sum 4.196 -23.339 -1.189 23.743 Atomic orbital electron populations 1.69999 1.06063 1.26588 1.50307 1.25006 0.94880 0.99287 0.95207 0.86472 0.79986 0.83525 0.77618 1.19729 1.20923 1.20933 1.21104 0.93012 0.90605 1.51352 0.92543 1.19068 0.94265 0.89407 0.98494 1.22870 0.96386 0.83420 0.98018 1.87981 1.33574 1.13579 1.95200 1.22617 0.92819 0.86391 0.99807 1.22620 0.93210 0.93396 0.88313 0.90729 1.23082 1.00903 0.95714 0.98563 1.21275 0.98482 0.95334 0.97785 0.90674 1.20186 0.98168 0.93598 1.02051 1.20962 0.94652 0.99271 1.00502 1.21440 0.98216 0.95483 1.00301 1.21958 0.98672 0.95049 1.01878 1.22260 0.93328 0.82292 0.99344 0.89000 1.88844 1.75246 1.24490 1.38542 0.92932 0.95649 0.95771 0.94871 0.94785 0.93033 0.93492 0.90219 0.90321 0.91791 0.92453 0.92235 0.91936 0.91562 0.91729 0.91408 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.52 -15.36 9.11 -34.44 -0.31 -15.68 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.70 5.34 -27.88 -0.15 0.55 16 10 C 0.07 1.60 5.88 37.16 0.22 1.82 16 11 O -0.38 -8.49 10.33 -37.84 -0.39 -8.88 16 12 C 0.06 1.01 5.38 37.15 0.20 1.21 16 13 C 0.08 1.19 3.55 -26.21 -0.09 1.09 16 14 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.14 -1.48 5.98 -25.46 -0.15 -1.64 16 16 C -0.11 -1.05 2.86 -92.10 -0.26 -1.31 16 17 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.10 -0.76 5.26 -29.66 -0.16 -0.91 16 19 C -0.12 -0.82 5.81 -28.15 -0.16 -0.98 16 20 C -0.12 -0.90 6.00 -26.83 -0.16 -1.06 16 21 C -0.14 -1.40 5.53 -26.86 -0.15 -1.55 16 22 C 0.09 0.99 3.45 -27.47 -0.09 0.90 16 23 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 24 O -0.35 -5.68 10.73 -37.84 -0.41 -6.09 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 33 H 0.08 0.70 7.82 -51.93 -0.41 0.29 16 34 H 0.06 0.43 7.62 -51.93 -0.40 0.04 16 35 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 40 H 0.07 0.73 7.95 -51.93 -0.41 0.31 16 41 H 0.07 0.77 8.14 -51.94 -0.42 0.35 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -32.67 324.04 -9.07 -41.73 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -7.49 Total: -5.82 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -1.37 Total: -15.95 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.80 Total: -14.97 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.67 -9.07 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379227334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.011 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds